BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0207.0004.p
         (122 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0ZBT9.1 C0ZBT9_BREBN Putative uncharacterized protein                124   3e-27
A6CSQ2.1 A6CSQ2_9BACI Putative uncharacterized protein                121   2e-26
Q2BF08.1 Q2BF08_9BACI Putative uncharacterized protein                119   1e-25
B1HS51.1 B1HS51_LYSSC Putative uncharacterized protein                118   2e-25
A3IDE5.1 A3IDE5_9BACI Putative uncharacterized protein                118   2e-25

>C0ZBT9.1 C0ZBT9_BREBN Putative uncharacterized protein
          Length = 107

 Score =  124 bits (311), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 71/99 (71%), Gaps = 3/99 (3%)

Query: 24  CHTSAPGVRKSHHSAEFKSGLTTRLNRIEGQIRGVKGMIERDTYCDDXXXXXXXXXXXXX 83
           CHTS    R SHHS + K  L  RLNRIEGQIRG+KGM+E+D YCDD             
Sbjct: 12  CHTSD---RNSHHSEKTKQNLQARLNRIEGQIRGIKGMVEKDAYCDDVLNQIAAVQSALN 68

Query: 84  SVGKLLLEGHMKSCIIERIEAGEHEVIDELLVTVNKLMK 122
           SVG++LLEGHMKSC+IERI+ G++ VIDELL T+NKLMK
Sbjct: 69  SVGRILLEGHMKSCVIERIQEGDNTVIDELLTTMNKLMK 107


>A6CSQ2.1 A6CSQ2_9BACI Putative uncharacterized protein
          Length = 112

 Score =  121 bits (304), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 72/101 (71%), Gaps = 1/101 (0%)

Query: 22  DDCHTSAPGVRKSHHSAEFKSGLTTRLNRIEGQIRGVKGMIERDTYCDDXXXXXXXXXXX 81
           D C +S    RKSHHS + KS L TRLNRIEGQIRG+K +IE DTYCDD           
Sbjct: 12  DSCCSSDED-RKSHHSDKVKSNLVTRLNRIEGQIRGIKRLIENDTYCDDVITQISATQSA 70

Query: 82  XXSVGKLLLEGHMKSCIIERIEAGEHEVIDELLVTVNKLMK 122
             SV K+LLEGHMKSC++ERI+ G+ EV+DE+LVT+ KLMK
Sbjct: 71  MNSVAKILLEGHMKSCVLERIQEGDTEVLDEVLVTIQKLMK 111


>Q2BF08.1 Q2BF08_9BACI Putative uncharacterized protein
          Length = 114

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 72/106 (67%), Gaps = 6/106 (5%)

Query: 17  GHSCGDDCHTSAPGVRKSHHSAEFKSGLTTRLNRIEGQIRGVKGMIERDTYCDDXXXXXX 76
           G SC    H S    RKSHHS   K  L TRLNRIEGQIRG+KG+IE+DTYCDD      
Sbjct: 14  GESCD---HVSG---RKSHHSEVTKKNLVTRLNRIEGQIRGIKGLIEKDTYCDDVITQIS 67

Query: 77  XXXXXXXSVGKLLLEGHMKSCIIERIEAGEHEVIDELLVTVNKLMK 122
                  SV K+LLEGH+KSC++ERI+  + EV+DELLVTV +LMK
Sbjct: 68  ATQSALNSVAKILLEGHLKSCVVERIQENDLEVVDELLVTVQRLMK 113


>B1HS51.1 B1HS51_LYSSC Putative uncharacterized protein
          Length = 110

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 69/102 (67%), Gaps = 1/102 (0%)

Query: 22  DDCHTS-APGVRKSHHSAEFKSGLTTRLNRIEGQIRGVKGMIERDTYCDDXXXXXXXXXX 80
           D CHT  A   RKSHH    K  LTTRLNRIEGQIRG+KGMIE+D YCDD          
Sbjct: 8   DACHTEGATSCRKSHHPERVKKDLTTRLNRIEGQIRGIKGMIEKDVYCDDVITQLSATQS 67

Query: 81  XXXSVGKLLLEGHMKSCIIERIEAGEHEVIDELLVTVNKLMK 122
              SV K+LLEGH+K C+++R+  G+  V+DEL+VT+ KLMK
Sbjct: 68  ALNSVAKILLEGHLKGCVVDRLSEGDDAVLDELVVTIQKLMK 109


>A3IDE5.1 A3IDE5_9BACI Putative uncharacterized protein
          Length = 110

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 69/102 (67%), Gaps = 1/102 (0%)

Query: 22  DDCHTS-APGVRKSHHSAEFKSGLTTRLNRIEGQIRGVKGMIERDTYCDDXXXXXXXXXX 80
           D CHT  A   RKSHH    K  LTTRLNRIEGQIRG+KGMIE+D YCDD          
Sbjct: 8   DACHTEGATSCRKSHHPERVKKDLTTRLNRIEGQIRGIKGMIEKDVYCDDVITQLSATQS 67

Query: 81  XXXSVGKLLLEGHMKSCIIERIEAGEHEVIDELLVTVNKLMK 122
              SV K+LLEGH+K C+++R+  G+  V+DEL+VT+ KLMK
Sbjct: 68  ALNSVAKILLEGHLKGCVVDRLSEGDDAVLDELVVTIQKLMK 109


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 608,906,703
Number of extensions: 17880857
Number of successful extensions: 33978
Number of sequences better than 1.0e-05: 259
Number of HSP's gapped: 34013
Number of HSP's successfully gapped: 260
Length of query: 122
Length of database: 3,060,696,203
Length adjustment: 88
Effective length of query: 34
Effective length of database: 2,231,646,883
Effective search space: 75875994022
Effective search space used: 75875994022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)