BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0207.0001.p
         (103 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIT7.1 B3KIT7_9BACI 2-oxoglutarate dehydrogenase, E2 subunit, ...    99   2e-19
B1DDC2.1 B1DDC2_9BACL 2-oxoglutarate dehydrogenase, E2 subunit, ...    84   3e-15
B7DP06.1 B7DP06_9BACL 2-oxoglutarate dehydrogenase, E2 subunit, ...    83   7e-15
Q9KAT2.1 Q9KAT2_BACHD Dihydrolipoamide succinyltransferase             83   7e-15
A4ILR0.1 A4ILR0_GEOTN Dihydrolipoamide succinyltransferase             82   1e-14

>B3KIT7.1 B3KIT7_9BACI 2-oxoglutarate dehydrogenase, E2 subunit,
          dihydrolipoamide succinyltransferase
          Length = 424

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 57/68 (83%)

Query: 1  VSEIKVPDLGESISEGTIYKWLVKEGDTVGQGDVLAELETDKVNLEISAEEDGVISSLLR 60
          +SEI VP +GESI+EGTI+KW VKEGD++  GDVL ELETDKVNLEISAE +GV+  +LR
Sbjct: 1  MSEITVPAMGESITEGTIFKWHVKEGDSINIGDVLLELETDKVNLEISAESEGVVEKILR 60

Query: 61 QAGENVAV 68
          Q GENV +
Sbjct: 61 QEGENVTI 68


>B1DDC2.1 B1DDC2_9BACL 2-oxoglutarate dehydrogenase, E2 subunit,
          dihydrolipoamide succinyltransferase
          Length = 408

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 53/68 (77%)

Query: 1  VSEIKVPDLGESISEGTIYKWLVKEGDTVGQGDVLAELETDKVNLEISAEEDGVISSLLR 60
          + +I VP +GESI+EGTI KW+VK GD V QGDVL ELETDKVN+EISAE+DGV+  + +
Sbjct: 1  MQQIIVPAMGESITEGTISKWVVKVGDAVKQGDVLLELETDKVNIEISAEQDGVLQEIAK 60

Query: 61 QAGENVAV 68
            G+ V +
Sbjct: 61 NEGDTVEI 68


>B7DP06.1 B7DP06_9BACL 2-oxoglutarate dehydrogenase, E2 subunit,
          dihydrolipoamide succinyltransferase
          Length = 415

 Score = 83.2 bits (204), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 54/68 (79%)

Query: 1  VSEIKVPDLGESISEGTIYKWLVKEGDTVGQGDVLAELETDKVNLEISAEEDGVISSLLR 60
          ++E+KVP LGESI E TI +WL +EGD V  G+ +AELETDKVN+E+ AEE GV++ +L+
Sbjct: 1  MAEVKVPSLGESIVEATIGQWLKREGDAVESGEAIAELETDKVNVEVIAEESGVLAQILK 60

Query: 61 QAGENVAV 68
          Q G+ VA+
Sbjct: 61 QVGDTVAI 68


>Q9KAT2.1 Q9KAT2_BACHD Dihydrolipoamide succinyltransferase
          Length = 411

 Score = 83.2 bits (204), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 51/66 (77%)

Query: 3  EIKVPDLGESISEGTIYKWLVKEGDTVGQGDVLAELETDKVNLEISAEEDGVISSLLRQA 62
          EIKVP+L ESI+EGTI +WL K GD V QG+ +AELETDKVN+EI+AE  GVI  L R+ 
Sbjct: 3  EIKVPELAESITEGTIAQWLKKVGDHVSQGEYIAELETDKVNVEITAEHSGVIQELKREE 62

Query: 63 GENVAV 68
          G+ V V
Sbjct: 63 GDTVEV 68


>A4ILR0.1 A4ILR0_GEOTN Dihydrolipoamide succinyltransferase
          Length = 439

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 52/68 (76%)

Query: 1  VSEIKVPDLGESISEGTIYKWLVKEGDTVGQGDVLAELETDKVNLEISAEEDGVISSLLR 60
          V+EIKVP+L ESI+EGTI +WL K GD V +G+ + ELETDKVN+EI AEE GV+  LL 
Sbjct: 13 VAEIKVPELAESITEGTIAQWLKKPGDYVEKGESVCELETDKVNVEIMAEESGVLQQLLA 72

Query: 61 QAGENVAV 68
            G+ VAV
Sbjct: 73 NEGDTVAV 80


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.307    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 383,562,076
Number of extensions: 12201039
Number of successful extensions: 41191
Number of sequences better than 1.0e-05: 2281
Number of HSP's gapped: 41716
Number of HSP's successfully gapped: 2475
Length of query: 103
Length of database: 3,060,696,203
Length adjustment: 71
Effective length of query: 32
Effective length of database: 2,391,804,138
Effective search space: 76537732416
Effective search space used: 76537732416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 126 (53.1 bits)