BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0206.0006.p (300 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5KVG5.1 Q5KVG5_GEOKA Manganese catalase EC=1.11.1.6 427 e-118 C3J5R0.1 C3J5R0_9BACI Manganese containing catalase 427 e-118 B7Y8C5.1 B7Y8C5_9BACI Manganese containing catalase 427 e-118 Q9KDZ2.1 Q9KDZ2_BACHD Mn catalase 417 e-115 B4AEL2.1 B4AEL2_BACPU Manganese 413 e-113 >Q5KVG5.1 Q5KVG5_GEOKA Manganese catalase EC=1.11.1.6 Length = 299 Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust. Identities = 197/298 (66%), Positives = 242/298 (81%) Query: 1 MFQRMDEIMIEIPDVEKPDPNAAAAVQELLGGKFGEMSTLNNYLYQSFNFRSKDKLKPFY 60 +FQR+D + IE+P + DPNAAAAVQELLGG+FGEMSTLNNYL+QSFNFR K KL+PFY Sbjct: 2 VFQRIDRLAIELPKPKYADPNAAAAVQELLGGRFGEMSTLNNYLFQSFNFRQKKKLRPFY 61 Query: 61 DLVMSITAEELGHVELVSHAVNKCLRGSTAYKQPDSTPLHAVKDARLSYHFLAGAQGAMP 120 +LV SITAEE GHVELVS+A+N CL GST PD+ P+ KD R +YHF+A AQ A P Sbjct: 62 ELVASITAEEFGHVELVSNAINLCLTGSTHPGDPDTAPMKDAKDKRNTYHFIATAQTAFP 121 Query: 121 FDSMGNPWTGANVFNSGNLVEDLLHNFFLECGARTHKMKVYEMTDHPAARAVVGFLLVRG 180 DSMG WTG VFNSGNL+ DLLHNFFLECGARTHKM+VYEMTDHP AR ++G+LLVRG Sbjct: 122 GDSMGKAWTGEYVFNSGNLILDLLHNFFLECGARTHKMRVYEMTDHPTAREMIGYLLVRG 181 Query: 181 GVHVVAYAKALEIATGVNVTKLVPVPSLSNKSFTEAAKYEEKGVHTKLYTWSNKDFSSIG 240 GVH++AYAKA+E+ATGV+VTKL+P+P L N+ F EA KYE++GVH +LYT+S++ + I Sbjct: 182 GVHILAYAKAIEVATGVDVTKLLPIPKLDNRVFDEARKYEDQGVHRRLYTFSDRYYKEIV 241 Query: 241 QIWKGTHPEDGLPLEVIQGVPEGVPIPEAPESKEEFAPGISAEEFKEIAKRLKMAGNI 298 +IW+GTHP DG PLEV++G P+G IP+ E EEFAPGISAE+F EIAKRL+ + + Sbjct: 242 RIWQGTHPSDGQPLEVVEGAPQGGAIPDLDEVPEEFAPGISAEDFFEIAKRLQRSAGL 299 >C3J5R0.1 C3J5R0_9BACI Manganese containing catalase Length = 299 Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust. Identities = 197/298 (66%), Positives = 242/298 (81%) Query: 1 MFQRMDEIMIEIPDVEKPDPNAAAAVQELLGGKFGEMSTLNNYLYQSFNFRSKDKLKPFY 60 +FQR+D + IE+P + DPNAAAAVQELLGG+FGEMSTLNNYL+QSFNFR K KL+PFY Sbjct: 2 VFQRIDRLAIELPKPKYADPNAAAAVQELLGGRFGEMSTLNNYLFQSFNFRQKKKLRPFY 61 Query: 61 DLVMSITAEELGHVELVSHAVNKCLRGSTAYKQPDSTPLHAVKDARLSYHFLAGAQGAMP 120 +LV SITAEE GHVELVS+A+N CL GST PD+ P+ KD R +YHF+A AQ A P Sbjct: 62 ELVASITAEEFGHVELVSNAINLCLTGSTHPGDPDTAPMKDAKDKRNTYHFIATAQTAFP 121 Query: 121 FDSMGNPWTGANVFNSGNLVEDLLHNFFLECGARTHKMKVYEMTDHPAARAVVGFLLVRG 180 DSMG WTG VFNSGNL+ DLLHNFFLECGARTHKM+VYEMTDHP AR ++G+LLVRG Sbjct: 122 GDSMGKAWTGEYVFNSGNLILDLLHNFFLECGARTHKMRVYEMTDHPTAREMIGYLLVRG 181 Query: 181 GVHVVAYAKALEIATGVNVTKLVPVPSLSNKSFTEAAKYEEKGVHTKLYTWSNKDFSSIG 240 GVH++AYAKA+E+ATGV+VTKL+P+P L N+ F EA KYE++GVH +LYT+S++ + I Sbjct: 182 GVHILAYAKAIEVATGVDVTKLLPIPKLDNRVFDEARKYEDQGVHRRLYTFSDRYYKEIV 241 Query: 241 QIWKGTHPEDGLPLEVIQGVPEGVPIPEAPESKEEFAPGISAEEFKEIAKRLKMAGNI 298 +IW+GTHP DG PLEV++G P+G IP+ E EEFAPGISAE+F EIAKRL+ + + Sbjct: 242 RIWQGTHPSDGQPLEVVEGAPQGGAIPDLDEVPEEFAPGISAEDFFEIAKRLQRSAGL 299 >B7Y8C5.1 B7Y8C5_9BACI Manganese containing catalase Length = 299 Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust. Identities = 197/298 (66%), Positives = 242/298 (81%) Query: 1 MFQRMDEIMIEIPDVEKPDPNAAAAVQELLGGKFGEMSTLNNYLYQSFNFRSKDKLKPFY 60 +FQR+D + IE+P + DPNAAAAVQELLGG+FGEMSTLNNYL+QSFNFR K KL+PFY Sbjct: 2 VFQRIDRLAIELPKPKYADPNAAAAVQELLGGRFGEMSTLNNYLFQSFNFRQKKKLRPFY 61 Query: 61 DLVMSITAEELGHVELVSHAVNKCLRGSTAYKQPDSTPLHAVKDARLSYHFLAGAQGAMP 120 +LV SITAEE GHVELVS+A+N CL GST PD+ P+ KD R +YHF+A AQ A P Sbjct: 62 ELVASITAEEFGHVELVSNAINLCLTGSTHPGDPDTAPMKDAKDKRNTYHFIATAQTAFP 121 Query: 121 FDSMGNPWTGANVFNSGNLVEDLLHNFFLECGARTHKMKVYEMTDHPAARAVVGFLLVRG 180 DSMG WTG VFNSGNL+ DLLHNFFLECGARTHKM+VYEMTDHP AR ++G+LLVRG Sbjct: 122 GDSMGKAWTGEYVFNSGNLILDLLHNFFLECGARTHKMRVYEMTDHPTAREMIGYLLVRG 181 Query: 181 GVHVVAYAKALEIATGVNVTKLVPVPSLSNKSFTEAAKYEEKGVHTKLYTWSNKDFSSIG 240 GVH++AYAKA+E+ATGV+VTKL+P+P L N+ F EA KYE++GVH +LYT+S++ + I Sbjct: 182 GVHILAYAKAIEVATGVDVTKLLPIPKLDNRVFDEARKYEDQGVHRRLYTFSDRYYKEIV 241 Query: 241 QIWKGTHPEDGLPLEVIQGVPEGVPIPEAPESKEEFAPGISAEEFKEIAKRLKMAGNI 298 +IW+GTHP DG PLEV++G P+G IP+ E EEFAPGISAE+F EIAKRL+ + + Sbjct: 242 RIWQGTHPSDGQPLEVVEGAPQGGAIPDLDEVPEEFAPGISAEDFFEIAKRLQRSAGL 299 >Q9KDZ2.1 Q9KDZ2_BACHD Mn catalase Length = 298 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 191/293 (65%), Positives = 238/293 (81%) Query: 1 MFQRMDEIMIEIPDVEKPDPNAAAAVQELLGGKFGEMSTLNNYLYQSFNFRSKDKLKPFY 60 MF+R+D+++I++P + PD NAAAAVQELLGG+FGEMSTLNNY+YQSFNFR K KL+PFY Sbjct: 1 MFKRIDKLLIDLPKPDHPDANAAAAVQELLGGRFGEMSTLNNYMYQSFNFRQKHKLRPFY 60 Query: 61 DLVMSITAEELGHVELVSHAVNKCLRGSTAYKQPDSTPLHAVKDARLSYHFLAGAQGAMP 120 +LV SITAEE GHVELVS+ +N + G+T PD TP+ KD R +YHF++ AQ + P Sbjct: 61 ELVASITAEEFGHVELVSNTINLMIEGTTFPGDPDITPMQDAKDKRNTYHFISTAQTSYP 120 Query: 121 FDSMGNPWTGANVFNSGNLVEDLLHNFFLECGARTHKMKVYEMTDHPAARAVVGFLLVRG 180 DSMG W G V NSGNL+ DLLHN+FLE GARTHKM+VYEMTDHP AR ++G+LLVRG Sbjct: 121 MDSMGASWRGDYVVNSGNLIFDLLHNYFLEIGARTHKMRVYEMTDHPVAREMIGYLLVRG 180 Query: 181 GVHVVAYAKALEIATGVNVTKLVPVPSLSNKSFTEAAKYEEKGVHTKLYTWSNKDFSSIG 240 GVH++AYAKALEIATGV++TK++PVP+LSN+ F A K+E++GVH KLYTWS+ D+ +I Sbjct: 181 GVHIIAYAKALEIATGVDLTKMLPVPNLSNRQFDYARKFEDQGVHRKLYTWSDMDYRTIS 240 Query: 241 QIWKGTHPEDGLPLEVIQGVPEGVPIPEAPESKEEFAPGISAEEFKEIAKRLK 293 QIWKG HP +G PLEV++G PEG PIP+ E EEFAPGIS ++F EIAKRLK Sbjct: 241 QIWKGEHPTEGGPLEVVKGTPEGAPIPDLEELPEEFAPGISRDDFLEIAKRLK 293 >B4AEL2.1 B4AEL2_BACPU Manganese Length = 298 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 192/292 (65%), Positives = 232/292 (79%) Query: 1 MFQRMDEIMIEIPDVEKPDPNAAAAVQELLGGKFGEMSTLNNYLYQSFNFRSKDKLKPFY 60 M +R ++I++P + PD N AAAVQELLGGKFGEMSTLNNY++QSFNFR K KLKPFY Sbjct: 1 MIKRDKRLLIDLPRPDHPDANGAAAVQELLGGKFGEMSTLNNYMFQSFNFRGKRKLKPFY 60 Query: 61 DLVMSITAEELGHVELVSHAVNKCLRGSTAYKQPDSTPLHAVKDARLSYHFLAGAQGAMP 120 DLV SITAEE GHVELV+ AVN + G+T PD+TP+ A D R + HF+ AQ P Sbjct: 61 DLVSSITAEEFGHVELVTTAVNLMITGTTHGGDPDTTPMKAAVDKRNTQHFIQTAQTGYP 120 Query: 121 FDSMGNPWTGANVFNSGNLVEDLLHNFFLECGARTHKMKVYEMTDHPAARAVVGFLLVRG 180 FDSM PWTG NVF+SGNL+ DLLHNFFLECGARTHKM+VYEMTDHP AR ++G+LLVRG Sbjct: 121 FDSMAKPWTGENVFSSGNLILDLLHNFFLECGARTHKMRVYEMTDHPTAREMIGYLLVRG 180 Query: 181 GVHVVAYAKALEIATGVNVTKLVPVPSLSNKSFTEAAKYEEKGVHTKLYTWSNKDFSSIG 240 GVHVVAYAKALE+ATGV+V K++P+P+L NK F A K+E++ VHTKLYT+S+ D+ I Sbjct: 181 GVHVVAYAKALEVATGVDVGKMLPIPNLDNKYFDSARKFEDQNVHTKLYTFSDTDYKDIN 240 Query: 241 QIWKGTHPEDGLPLEVIQGVPEGVPIPEAPESKEEFAPGISAEEFKEIAKRL 292 +IWKG+HP DG PL VI+G P+G P+P+ E EEFAPGIS E+F EIAKRL Sbjct: 241 KIWKGSHPIDGKPLTVIEGTPQGAPVPDYRELPEEFAPGISKEDFDEIAKRL 292 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,857,775,530 Number of extensions: 79525952 Number of successful extensions: 186630 Number of sequences better than 1.0e-05: 364 Number of HSP's gapped: 186017 Number of HSP's successfully gapped: 364 Length of query: 300 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 165 Effective length of database: 1,788,859,178 Effective search space: 295161764370 Effective search space used: 295161764370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)