BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0206.0005.p (187 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8VQM2.1 A8VQM2_9BACI Putative uncharacterized protein 129 1e-28 A8U655.1 A8U655_9LACT Lipoprotein, putative 114 5e-24 C1I7W1.1 C1I7W1_9CLOT Putative uncharacterized protein 91 6e-17 Q833X8.1 Q833X8_ENTFA Lipoprotein, putative 89 2e-16 C2JKW0.1 C2JKW0_ENTFA Lipoprotein 89 2e-16 >A8VQM2.1 A8VQM2_9BACI Putative uncharacterized protein Length = 336 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 63/142 (44%), Positives = 95/142 (66%), Gaps = 4/142 (2%) Query: 48 DAVTSAS---VVDNGEDFKKAISKEGTWIAATLKDLSFTEDLVVEGEFSNKGKPARKIAL 104 D +T A+ V+D E I +G WI D++ EDLV+EG+ N+ +P RK+AL Sbjct: 196 DGMTGATYHEVMDE-ESLLSYIGADGAWILHFYGDITTDEDLVMEGDQENRDEPERKLAL 254 Query: 105 YTQDADHNITNSFRLAAPKITIKSENTQIQGGTFVGDVYVEANGFKVVNATIEGNVYFSD 164 Y QDAD N+T + L AP +T+++EN ++Q GTFVGD+YVEANGF + T+EGNVYF+ Sbjct: 255 YEQDADRNVTETHTLEAPSLTVRNENGRLQYGTFVGDIYVEANGFVLNGMTVEGNVYFAS 314 Query: 165 DKYQATYSAADQGKVTGVTEVK 186 ++Y+A+ +D +++G EV+ Sbjct: 315 EEYEASADISDDTEISGSVEVQ 336 Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 79/116 (68%) Query: 66 ISKEGTWIAATLKDLSFTEDLVVEGEFSNKGKPARKIALYTQDADHNITNSFRLAAPKIT 125 I +G WI D++ +DLV+EG+ N+ +P RK+ALY QD D N+T + L AP +T Sbjct: 69 IGADGAWILHFYDDVTTDQDLVMEGDQENRDEPERKLALYEQDEDRNVTETHTLEAPSLT 128 Query: 126 IKSENTQIQGGTFVGDVYVEANGFKVVNATIEGNVYFSDDKYQATYSAADQGKVTG 181 +++EN ++Q G F+GD+YVEANGF + T+EG+V+F+ ++Y + ++ +++G Sbjct: 129 VRNENGRLQYGGFIGDIYVEANGFVLNGMTVEGDVHFAGEEYFESSDISEDTEISG 184 >A8U655.1 A8U655_9LACT Lipoprotein, putative Length = 194 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 63/144 (43%), Positives = 89/144 (61%), Gaps = 5/144 (3%) Query: 48 DAVTSASVVDNGEDFKKAISKEGTWIAATLKDLSFTEDLVVEGEFSNK----GKPARKIA 103 + VT+AS+ ++ D +S +GTWI A D+ ED++V G F +K G RK+A Sbjct: 52 EVVTTASISNDPADVVAGLSADGTWIYAITDDVVVPEDIIVSGTFYDKNDESGDIYRKLA 111 Query: 104 LYTQDADHNITNSFRLAAPKITIKSENTQIQGGTFVGDVYVEANGFKVVNATIEGNVYFS 163 LY+QD D N+T F L APK+ ++S N +IQ GTFVGDV V+A GF++ ++ +EGNV F Sbjct: 112 LYSQDEDRNVTAEFTLEAPKMIVESPNFKIQNGTFVGDVVVKAEGFQLADSKVEGNVTF- 170 Query: 164 DDKYQATYSAADQGKVTGVTEVKK 187 D + + D G VTG T V K Sbjct: 171 DSQELMDSAVLDAGTVTGETTVAK 194 >C1I7W1.1 C1I7W1_9CLOT Putative uncharacterized protein Length = 209 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 10/147 (6%) Query: 48 DAVTSASVVDNGEDFKKAISKEGTWIAATLKDLSFTEDLVVEGEF-------SNKGKPA- 99 D VTS S V + + +A+ + +WI D++ T+++V++ F S+K PA Sbjct: 65 DMVTSPSRVTDEANLFRALGE--SWIVILENDVNTTKEVVLDTGFEKADKDNSSKMVPAS 122 Query: 100 RKIALYTQDADHNITNSFRLAAPKITIKSENTQIQGGTFVGDVYVEANGFKVVNATIEGN 159 R +ALY + ++ L PK+TIK EN +I+GG GDVYVEANG + +ATI+GN Sbjct: 123 RVLALYKNGENKVKEAAYTLTTPKLTIKDENAKIEGGVVKGDVYVEANGVTLEDATIDGN 182 Query: 160 VYFSDDKYQATYSAADQGKVTGVTEVK 186 VYF +++ + T+ ++ KV G EVK Sbjct: 183 VYFKNEEAKNTFHMDEKSKVAGTMEVK 209 >Q833X8.1 Q833X8_ENTFA Lipoprotein, putative Length = 203 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 4/125 (3%) Query: 48 DAVTSASVVDNGEDFKKAISKEGTWIAATLKDLSFTEDLVVEGEFSNKGKPA----RKIA 103 + V+ AS+ E+ + A+S +G WI A +++F +++ V G F +KGK + RK+A Sbjct: 58 EVVSGASISAKPEELEMALSDKGNWIVAATDNVTFDKEVTVAGTFHDKGKDSNDVYRKLA 117 Query: 104 LYTQDADHNITNSFRLAAPKITIKSENTQIQGGTFVGDVYVEANGFKVVNATIEGNVYFS 163 LY+QD + +T + + PK+ + SEN I GT GD+ V+ANGF + + GN+ F Sbjct: 118 LYSQDDNKKVTAEYEITVPKLIVSSENFNIVHGTVKGDIEVKANGFTLNGTKVNGNITFD 177 Query: 164 DDKYQ 168 +Y+ Sbjct: 178 KQEYK 182 >C2JKW0.1 C2JKW0_ENTFA Lipoprotein Length = 203 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 4/125 (3%) Query: 48 DAVTSASVVDNGEDFKKAISKEGTWIAATLKDLSFTEDLVVEGEFSNKGKPA----RKIA 103 + V+ AS+ E+ + A+S +G WI A +++F +++ V G F +KGK + RK+A Sbjct: 58 EVVSGASISAKPEELEMALSDKGNWIVAATDNVTFDKEVTVAGTFHDKGKDSNDVYRKLA 117 Query: 104 LYTQDADHNITNSFRLAAPKITIKSENTQIQGGTFVGDVYVEANGFKVVNATIEGNVYFS 163 LY+QD + +T + + PK+ + SEN I GT GD+ V+ANGF + + GN+ F Sbjct: 118 LYSQDDNKKVTAEYEITVPKLIVSSENFNIVHGTVKGDIEVKANGFTLNGTKVNGNITFD 177 Query: 164 DDKYQ 168 +Y+ Sbjct: 178 KQEYK 182 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.130 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 873,361,281 Number of extensions: 31543166 Number of successful extensions: 62327 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 62303 Number of HSP's successfully gapped: 17 Length of query: 187 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 59 Effective length of database: 1,854,806,283 Effective search space: 109433570697 Effective search space used: 109433570697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 127 (53.5 bits)