BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0206.0001.p
         (134 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGD7.1 B3KGD7_9BACI Putative uncharacterized protein                116   8e-25

>B3KGD7.1 B3KGD7_9BACI Putative uncharacterized protein
          Length = 131

 Score =  116 bits (290), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 83/134 (61%), Gaps = 5/134 (3%)

Query: 1   MKHWVGRPVIMYCGEEPYTIMKGVLRKWDPAASVAVIGHQEITVPFRDIVFIKALAPKER 60
           MKHW+GR V++   +   + ++GVL+ WDP     ++G  E+ +PFR I  I       R
Sbjct: 1   MKHWIGRHVVIQRLDGAKSTVEGVLKGWDPVQEKVILGPGELIIPFRAIHRIMP-----R 55

Query: 61  ALAPTLHAVGYVMRERQQFDNAIYFKSAVTVWKGDQLIAYNTTITSHTKGSVTLKDGQNL 120
              P L+++GYV+    QFDNA+YF S V VW+G+QL++    +TSH + +VTL +G  L
Sbjct: 56  NSYPALNSIGYVVSHTIQFDNAVYFGSCVMVWRGNQLVSSQAILTSHDEDTVTLSNGTIL 115

Query: 121 LKGSHVFVVRSLRG 134
            K  H FVVRSLRG
Sbjct: 116 RKDEHDFVVRSLRG 129


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 788,681,788
Number of extensions: 27975797
Number of successful extensions: 53676
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 53675
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 3,060,696,203
Length adjustment: 98
Effective length of query: 36
Effective length of database: 2,137,436,733
Effective search space: 76947722388
Effective search space used: 76947722388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)