BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0205.0005.p (513 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DD38.1 B1DD38_9BACL Extracellular solute-binding protein family 1 306 4e-81 B3K8I2.1 B3K8I2_9BACI Extracellular solute-binding protein family 1 305 5e-81 B3KGE2.1 B3KGE2_9BACI Extracellular solute-binding protein family 1 303 2e-80 Q8XLL1.1 Q8XLL1_CLOPE Putative uncharacterized protein CPE1030 298 1e-78 B1RRK3.1 B1RRK3_CLOPE Putative uncharacterized protein 297 2e-78 >B1DD38.1 B1DD38_9BACL Extracellular solute-binding protein family 1 Length = 515 Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 186/463 (40%), Positives = 266/463 (57%), Gaps = 18/463 (3%) Query: 61 LEQVELSLYLPGGPDKDVASVEQAINEYLKDKINATIKINQLSWDKPADKVNLMIQSGEV 120 L+ +L L G P D A VE A+N+ L +KINATI I + W DKVNLMI S E Sbjct: 59 LKPYKLKLVYEGPPQADEAMVEDALNKILTEKINATIDIAPIDWGAWDDKVNLMIASREP 118 Query: 121 FDMVYT--WN-FMTNAAKGAYLPLEELLDTYAKETKAQINPAYLQAATVNGHLYAVPTEK 177 D+++T WN + N AKGAY L +LL Y + ++P++L+ + +NG Y +PT K Sbjct: 119 VDILFTAQWNGYSKNVAKGAYKELGDLLGKYGQGIIGSLDPSFLEGSKINGKNYGIPTNK 178 Query: 178 ELGQSVGFAFDKAIVDKYGFDVNSIKKLEDIEPMLKTIKEKEPAITPLFMNHTDSLNWFT 237 EL + G + K I D+ G D++++K ED++ + K +KEK+P +TPL+M S T Sbjct: 179 ELAFAGGVVYRKDIADELGLDMSTVKTAEDLDAIYKVVKEKKPDMTPLYM-QGGSFGQLT 237 Query: 238 VYPDSEDLDGSNEIPTLLDYK----TMKVFNEYDTPEILAR-LKLIREWYKAGYINKNGA 292 + D G IP ++ + T+K+ ++D I R LKL R++++ GYINK+ A Sbjct: 238 EF----DSLGDGTIPGVISKEDSDTTVKMMEDFD---IYKRYLKLARDFFQKGYINKDAA 290 Query: 293 TDKTELKDAVKSGKAWFTYGNMNPTSTNDWTRLAEKPMVIKT--LLPVQVSTKSLQGSML 350 T + DA K G + T + P + A + L VST G+ML Sbjct: 291 TTQLSSGDAYKGGNVFSTIEPLKPGKAAEIANAAGIGGKLDQIYLTGKTVSTSETAGAML 350 Query: 351 AISRTSKNPERAMMFINLIHTDPVLYNLLTFGIEGKHYKKVGDNTVEFIPDSGYNSVSSW 410 AIS TSKNPERAMMFINL+HTD + NLL FGIEG HY GD Y +W Sbjct: 351 AISTTSKNPERAMMFINLLHTDKDIVNLLNFGIEGVHYTLSGDVMTPTDKSGQYAPGVAW 410 Query: 411 MIGNVLLNYLNKDEDPKRVQLYTDWNKNSKVSPVIGFVFDSTKVQSQIGALINITKQYKN 470 +GN LN++ E P + + + +N+ +K SP +GFVF+S V+S++GAL N+ KQY+ Sbjct: 411 ELGNQFLNHVWNTEAPDKWEQFKAFNEGAKPSPGLGFVFNSDSVKSEVGALANVIKQYQK 470 Query: 471 TLYSGEKDPEPILKEMNSKLKAAGLDAVISEIQSQMDAFLAAK 513 L +G D + +L E + LK+AG++ VI+E Q Q DAFLAAK Sbjct: 471 ALETGSVDTDKVLPEYIAALKSAGVEKVIAEKQKQFDAFLAAK 513 >B3K8I2.1 B3K8I2_9BACI Extracellular solute-binding protein family 1 Length = 507 Score = 305 bits (782), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 176/477 (36%), Positives = 285/477 (59%), Gaps = 15/477 (3%) Query: 44 AAPAASDKAVATEKT---NELEQVELSLYLPGGPDKDVASVEQAINEYLKDKINATIKIN 100 + PA + AV ++ T ++L+ V+L +Y+ G KD+ V++ IN+YL +KINATI+I+ Sbjct: 34 SEPAKEEAAVQSDGTIDASKLDPVKLKMYMIGPNQKDLPMVQEEINKYLTEKINATIEIS 93 Query: 101 QLSWDKPADKVNLMIQSGEVFDMVYT----WNFMTNAAKGAYLPLEELLDTYAKETKAQI 156 + W + ++ ++ SGE +D+ +T ++++ NAAKGA+ PL ELLD Y K K + Sbjct: 94 MIDWGDYSQRMQVITSSGENYDIAFTSSWAFDYLPNAAKGAFKPLNELLDQYGKGIKEVL 153 Query: 157 NPAYLQAATVNGHLYAVPTEKELGQSVGFAFDKAIVDKYGFDVNSIKKLEDIEPMLKTIK 216 +P +L+ VNG Y +P KEL Q + F+K +DKY D++ + LED+EP+LKTIK Sbjct: 154 DPRFLEGTKVNGVNYGIPANKELAQQFVWRFNKKYLDKYNLDISKVTTLEDLEPLLKTIK 213 Query: 217 EKEPA-ITPLFMNHTDSLNWFTVYPDSEDLDGSNEIPTLLDYKTMKVFNEYDTPEILARL 275 E EPA ITPL + YP +++ I LD + K N D+PE+ + L Sbjct: 214 ENEPAEITPLAVPKGFKPYMPFDYPLGDEI----PIGMYLDTEDFKFVNLLDSPELKSAL 269 Query: 276 KLIREWYKAGYINKNGATDKTELKDAVKSGKAWFTYGNMNPTSTNDWTRLAEKPMVIKTL 335 + +R++YKAGY+ ++ AT + D +K+GK P + W+R A +V + + Sbjct: 270 ETMRKYYKAGYVREDIAT--LDGIDNIKTGKWLVDREITQPYAELGWSRNAGYDIVTRPM 327 Query: 336 LPVQVSTKSLQGSMLAISRTSKNPERAMMFINLIHTDPVLYNLLTFGIEGKHYKKVGDNT 395 + T S GSM+AIS SKN ERAMMF+NL++TD L N++ +G+EG HYKK+ + Sbjct: 328 HDPVIYTSSAAGSMMAISSYSKNSERAMMFLNLLNTDVKLRNMIQYGLEGTHYKKLEEPY 387 Query: 396 VEFIPDSGYN-SVSSWMIGNVLLNYLNKDEDPKRVQLYTDWNKNSKVSPVIGFVFDSTKV 454 +E +P N ++ + +GN+ L YL++ E + + + +N ++ V+P GF FD+ V Sbjct: 388 IEDMPAMQENYAMPGFALGNMFLTYLHEGEPKDKWEAFEKFNTSAVVAPTFGFNFDTAPV 447 Query: 455 QSQIGALINITKQYKNTLYSGEKDPEPILKEMNSKLKAAGLDAVISEIQSQMDAFLA 511 ++++ A+ N+ K++ LY+G DPE L + K + AG+D VI+E Q Q D + A Sbjct: 448 KTEVAAITNVAKEFIPALYTGSVDPEEYLPKAKQKFQDAGIDKVIAEAQKQFDEWKA 504 >B3KGE2.1 B3KGE2_9BACI Extracellular solute-binding protein family 1 Length = 492 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 278/455 (61%), Gaps = 11/455 (2%) Query: 64 VELSLYLPGGPDKDVASVEQAINEYLKDKINATIKINQLSWDKPADKVNLMIQSGEVFDM 123 VEL Y G P KDV VE IN+Y +KI T+ + + + K+ +M SGE D+ Sbjct: 44 VELIWYTIGTPQKDVDKVEAEINKYTAEKIGVTVDMKMIDFGDYNQKMQVMAASGEPMDI 103 Query: 124 VYT----WNFMTNAAKGAYLPLEELLDTYAKETKAQINPAYLQAATVNGHLYAVPTEKEL 179 ++T ++++ NA KGA++ L+EL++++ K K I+PA+L+ + V+GH YA+P KEL Sbjct: 104 LFTSSWAFDYVQNARKGAFMELDELIESHGKGIKEAIDPAFLEGSKVDGHNYAIPANKEL 163 Query: 180 GQSVGFAFDKAIVDKYGFDVNSIKKLEDIEPMLKTIKEKEPAITPLFMNHTDSLNWFTVY 239 + F+K ++DKY D++++K +E +EP+LKTIKE EP + PL + S ++ + Sbjct: 164 PAQEAWRFNKTLLDKYNLDISNVKSMESLEPLLKTIKENEPNVVPLAI----SKDFGPLL 219 Query: 240 PDSEDLDGSNEIPTLLDYKTMKVFNEYDTPEILARLKLIREWYKAGYINKNGATDKTELK 299 P ++ L D + +KV N + PE + LKL+ ++YKAGYI+ AT T + Sbjct: 220 PFDYIIEKMPMAVYLDDKEELKVVNFLEMPETMDMLKLMNKYYKAGYISPEAAT-TTSTQ 278 Query: 300 DAVKSGKAWFT-YGNMNPTSTNDWTRLAEKPMVIKTLLPVQVSTKSLQGSMLAISRTSKN 358 D + SG WFT P + N W++ P+V + S+ GSM AIS SK Sbjct: 279 DLMTSGN-WFTDRAATQPFADNLWSQSYGYPVVSTPAGDANIFNWSVMGSMQAISANSKY 337 Query: 359 PERAMMFINLIHTDPVLYNLLTFGIEGKHYKKVGDNTVEFIPDSGYNSVSSWMIGNVLLN 418 PE+AM F+NL++TD L NL+ GIEG HYKK+ +N +E +P+S + ++ +GNV+L Sbjct: 338 PEKAMEFLNLLNTDVYLRNLVDSGIEGVHYKKLSENVMENLPESKNYDMPTFALGNVMLT 397 Query: 419 YLNKDEDPKRVQLYTDWNKNSKVSPVIGFVFDSTKVQSQIGALINITKQYKNTLYSGEKD 478 YLN ++ + + + +N++ + +P++GF FD TKV +++ A+ N+ +++ L +G + Sbjct: 398 YLNPEDPENKWEEFKKFNESGQPAPLLGFNFDPTKVSTELAAVNNVKEEFWAPLMTGTVN 457 Query: 479 PEPILKEMNSKLKAAGLDAVISEIQSQMDAFLAAK 513 PE L + N KLKAAGLD +I+E QSQ+DA+ A+K Sbjct: 458 PEEFLPKANEKLKAAGLDKIIAEAQSQIDAWKASK 492 >Q8XLL1.1 Q8XLL1_CLOPE Putative uncharacterized protein CPE1030 Length = 482 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 178/470 (37%), Positives = 273/470 (58%), Gaps = 19/470 (4%) Query: 47 AASDKAVATEKTNELEQVELSLYLPGGPDKDVASVEQAINEYLKDKINATIKINQLSWDK 106 +SDK +E E V L Y+ G P D VE+ +N+Y+KDKINAT+ I + + Sbjct: 26 GSSDKKAEGGAASE-EPVNLVWYVIGKPQTDGELVEEEVNKYIKDKINATVDIKHIDFGD 84 Query: 107 PADKVNLMIQSGEVFDMVYT--WNF--MTNAAKGAYLPLEELLDTYAKETKAQINPAYLQ 162 + K+N++ SGE +D+ +T W F + NA KGA+L L +LLD + K I+ + Sbjct: 85 YSQKMNVIANSGEEYDLAFTCSWAFPYLENARKGAFLELNDLLDKEGADLKGVIDERLWK 144 Query: 163 AATVNGHLYAVPTEKELGQSVGFAFDKAIVDKYGFDVNSIKKLEDIEPMLKTIKEKEPAI 222 A V+G +Y VP +KE+ + + FDK +V+KY I +ED+EP L+ IKEKEP Sbjct: 145 GAEVDGKIYGVPNQKEIAGAPMWVFDKELVEKYDIPYQDIHSVEDLEPWLQIIKEKEPDF 204 Query: 223 TPLFMNHTDSLNWFTVYPDSEDLDGSNEIPTLLDYKTMKVFNEYDTPEILARLKLIREWY 282 P F DS+ P D + + + T+ V N Y+T E+ A + +RE+Y Sbjct: 205 VP-FYTQGDSI------PLEFD-EIMRPLGVFFNDDTLTVQNMYETEEMKAMMTKLREYY 256 Query: 283 KAGYINKNGATDKTELKDAVKSGKAWFTYGNMNPTSTNDWTRLAEKPMVIKTLLPVQVST 342 + GYIN++ A + +K+ VK W G P + N W + + +V +++P V+ Sbjct: 257 EKGYINQDAAVNN--MKNEVKRF-MWKADGQ--PYAENGWGQALGREVVTSSIIPPYVTN 311 Query: 343 KSLQGSMLAISRTSKNPERAMMFINLIHTDPVLYNLLTFGIEGKHYKKVGDNTVEFIPDS 402 S G+M AIS TSK+PE+AM INL++TD L NLL FGIEG HY+KV DN ++ P+ Sbjct: 312 NSTTGAMTAISATSKHPEKAMELINLVNTDSTLRNLLMFGIEGTHYEKVSDNQIKRDPNG 371 Query: 403 GYNSVSSWMIGNVLLNYLNKDEDPKRVQLYTDWNKNSKVSPVIGFVFDSTKVQSQIGALI 462 Y SV+SW GN+ Y+ + + + D+NK +K SP++GF F++ V +QI A+ Sbjct: 372 PY-SVTSWAYGNLFDTYVLDSDPADKWDAFEDFNKGAKTSPILGFKFNTEPVTTQISAVN 430 Query: 463 NITKQYKNTLYSGEKDPEPILKEMNSKLKAAGLDAVISEIQSQMDAFLAA 512 N+ ++++ TLYSG DP L ++N KL A+GLD + +E+Q Q+D + A+ Sbjct: 431 NVLQEFERTLYSGSVDPVKGLDDLNKKLAASGLDDIKAEMQKQLDEWKAS 480 >B1RRK3.1 B1RRK3_CLOPE Putative uncharacterized protein Length = 482 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 177/470 (37%), Positives = 273/470 (58%), Gaps = 19/470 (4%) Query: 47 AASDKAVATEKTNELEQVELSLYLPGGPDKDVASVEQAINEYLKDKINATIKINQLSWDK 106 +SDK +E E V L Y+ G P D VE+ +N+Y+KDKINAT+ I + + Sbjct: 26 GSSDKKAEGGAASE-EPVNLVWYVIGKPQTDGELVEEEVNKYIKDKINATVDIKHIDFGD 84 Query: 107 PADKVNLMIQSGEVFDMVYT--WNF--MTNAAKGAYLPLEELLDTYAKETKAQINPAYLQ 162 + K+N++ SGE +D+ +T W F + NA KGA+L L +LLD + K I+ + Sbjct: 85 YSQKMNVIANSGEEYDLAFTCSWAFPYLENARKGAFLELNDLLDKEGADLKGVIDERLWK 144 Query: 163 AATVNGHLYAVPTEKELGQSVGFAFDKAIVDKYGFDVNSIKKLEDIEPMLKTIKEKEPAI 222 A V+G +Y VP +KE+ + + FDK +V+KY + +ED+EP L+ IKEKEP Sbjct: 145 GAEVDGKIYGVPNQKEIAGAPMWVFDKELVEKYDIPYQDLHSVEDLEPWLQIIKEKEPDF 204 Query: 223 TPLFMNHTDSLNWFTVYPDSEDLDGSNEIPTLLDYKTMKVFNEYDTPEILARLKLIREWY 282 P F DS+ P D + + + T+ V N Y+T E+ A + +RE+Y Sbjct: 205 VP-FYTQGDSI------PLEFD-EIMRPLGVFFNDDTLTVQNMYETEEMKAMMTKLREYY 256 Query: 283 KAGYINKNGATDKTELKDAVKSGKAWFTYGNMNPTSTNDWTRLAEKPMVIKTLLPVQVST 342 + GYIN++ A + +K+ VK W G P + N W + + +V +++P V+ Sbjct: 257 EKGYINQDAAVNN--MKNEVKRF-MWKADGQ--PYAENGWGQALGREVVTSSIIPPYVTN 311 Query: 343 KSLQGSMLAISRTSKNPERAMMFINLIHTDPVLYNLLTFGIEGKHYKKVGDNTVEFIPDS 402 S G+M AIS TSK+PE+AM INL++TD L NLL FGIEG HY+KV DN ++ P+ Sbjct: 312 NSTTGAMTAISATSKHPEKAMELINLVNTDSTLRNLLMFGIEGTHYEKVSDNQIKRDPNG 371 Query: 403 GYNSVSSWMIGNVLLNYLNKDEDPKRVQLYTDWNKNSKVSPVIGFVFDSTKVQSQIGALI 462 Y SV+SW GN+ Y+ + + + D+NK +K SP++GF F++ V +QI A+ Sbjct: 372 PY-SVTSWAYGNLFDTYVLDSDPADKWDAFEDFNKGAKTSPILGFKFNTEPVTTQISAVN 430 Query: 463 NITKQYKNTLYSGEKDPEPILKEMNSKLKAAGLDAVISEIQSQMDAFLAA 512 N+ ++++ TLYSG DP L ++N KL A+GLD + +E+Q Q+D + A+ Sbjct: 431 NVLQEFERTLYSGSVDPVKGLDDLNKKLAASGLDDIKAEMQKQLDEWKAS 480 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.130 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,936,777,564 Number of extensions: 127259850 Number of successful extensions: 268326 Number of sequences better than 1.0e-05: 181 Number of HSP's gapped: 267817 Number of HSP's successfully gapped: 187 Length of query: 513 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 373 Effective length of database: 1,741,754,103 Effective search space: 649674280419 Effective search space used: 649674280419 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)