BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0205.0003.p (328 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D8W1.1 B1D8W1_9BACL Binding-protein-dependent transport system... 340 8e-92 B1DBE5.1 B1DBE5_9BACL Binding-protein-dependent transport system... 327 8e-88 B3KBX7.1 B3KBX7_9BACI Binding-protein-dependent transport system... 322 2e-86 B1DGM9.1 B1DGM9_9BACL Binding-protein-dependent transport system... 320 1e-85 B9MPG0.1 B9MPG0_ANATD Binding-protein-dependent transport system... 315 3e-84 >B1D8W1.1 B1D8W1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 329 Score = 340 bits (873), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 159/279 (56%), Positives = 211/279 (75%) Query: 50 INNYLPMFGIIIAFKNINYVDGILGSPWVGLDNFKFLFATSDAWIITRNTVLYNFVFIIL 109 INNYLPMFGI+IAFK+IN+ GI+GS W+GL NF++LF T DA++ITRNT+LYN +FI+L Sbjct: 51 INNYLPMFGIVIAFKDINFAKGIMGSDWIGLKNFEYLFKTQDAYVITRNTLLYNILFIVL 110 Query: 110 NLVIAVSIAIALNELKNKLAAKFYQSVMFFPYFLSMVVVSYLVFAFLNVEYGFINKGILA 169 N IA ++AI LNE++ + ++ YQ+++ PY +SMV+V YLV FL+VE GF+NK +L Sbjct: 111 NTTIAFTLAIMLNEIRKRFLSRTYQTLILLPYLISMVIVGYLVLGFLDVENGFMNKTLLP 170 Query: 170 MFGLNELNWYSEPKYWPFILPLINLWKGVGYGCVIYLAAIIGIDSEYYEAALIDGASKWK 229 M G+ ++WYSE KYWP+IL ++N+WKGVG C+IYLAAIIGID EYYEAA IDGA++W+ Sbjct: 171 MLGMEPISWYSETKYWPWILTIVNVWKGVGNLCIIYLAAIIGIDQEYYEAATIDGANRWQ 230 Query: 230 QILHXXXXXXXXXXXXXXXXXXXXXFRSDFGLFYQTTLNSGALYPTTLVIDTYVYNALIN 289 Q++ F SDFGLFYQ LN+G+L P T IDTYVY ALIN Sbjct: 231 QVVRITFPLVLPVITIMTLLAIGRIFYSDFGLFYQVPLNTGSLMPVTNTIDTYVYRALIN 290 Query: 290 MGNLGMSAAAGLYQSIVGFFLVLGSNWIVRKVDKDQAVF 328 +G++GMS+AAGLYQ++VGF LV+ SN +VRK +KD A+F Sbjct: 291 LGDIGMSSAAGLYQALVGFILVIVSNAVVRKFNKDNALF 329 >B1DBE5.1 B1DBE5_9BACL Binding-protein-dependent transport systems inner membrane component Length = 309 Score = 327 bits (839), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 157/279 (56%), Positives = 205/279 (73%) Query: 50 INNYLPMFGIIIAFKNINYVDGILGSPWVGLDNFKFLFATSDAWIITRNTVLYNFVFIIL 109 INNY PM G+ IAFK+IN+ GI+ S WVG NF++LF T DA++ITRNT+LYN VFIIL Sbjct: 31 INNYFPMLGMAIAFKDINFAKGIIASDWVGFKNFEYLFKTRDAFLITRNTLLYNVVFIIL 90 Query: 110 NLVIAVSIAIALNELKNKLAAKFYQSVMFFPYFLSMVVVSYLVFAFLNVEYGFINKGILA 169 V+A+ +AI LNE+KN+ ++ YQS++ P+ +SMV+V YLVFAFL+ GF+NK +L Sbjct: 91 GTVLAIGLAIVLNEIKNRYVSRTYQSIILLPHLISMVIVGYLVFAFLDNSNGFMNKTLLP 150 Query: 170 MFGLNELNWYSEPKYWPFILPLINLWKGVGYGCVIYLAAIIGIDSEYYEAALIDGASKWK 229 GL+E++WYSE KYWP+IL ++++WK +GY C+IYLAAIIGID EYYEAA IDGAS+ + Sbjct: 151 WLGLSEISWYSEAKYWPYILTIVHVWKSIGYSCIIYLAAIIGIDQEYYEAAKIDGASRLR 210 Query: 230 QILHXXXXXXXXXXXXXXXXXXXXXFRSDFGLFYQTTLNSGALYPTTLVIDTYVYNALIN 289 QI F SDFGLFYQ LN+G L P T IDTYVY ALIN Sbjct: 211 QIFSITVPLITPVITILTLLSIGRIFYSDFGLFYQVPLNTGILMPVTQTIDTYVYRALIN 270 Query: 290 MGNLGMSAAAGLYQSIVGFFLVLGSNWIVRKVDKDQAVF 328 +G++GMS+AAG+YQS+VGF LV+ SN +V+K +KD A+F Sbjct: 271 LGDIGMSSAAGMYQSLVGFTLVILSNAVVKKFNKDNALF 309 >B3KBX7.1 B3KBX7_9BACI Binding-protein-dependent transport systems inner membrane component Length = 307 Score = 322 bits (826), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 153/279 (54%), Positives = 207/279 (74%) Query: 50 INNYLPMFGIIIAFKNINYVDGILGSPWVGLDNFKFLFATSDAWIITRNTVLYNFVFIIL 109 INNY PMFG+ IAFKNIN+ GI S W+G NF++LF T+DA+IITRNT+LYN FI++ Sbjct: 29 INNYAPMFGMFIAFKNINFSAGIFESDWIGFKNFEYLFKTTDAFIITRNTILYNAAFIVI 88 Query: 110 NLVIAVSIAIALNELKNKLAAKFYQSVMFFPYFLSMVVVSYLVFAFLNVEYGFINKGILA 169 V+++++AI LNE++ K+ ++FYQSV+ P+ +S VVV YLV+A L++E GF+NK IL Sbjct: 89 GTVLSIAVAILLNEIRVKVMSRFYQSVIVLPHLISFVVVGYLVYAALSLETGFMNKTILP 148 Query: 170 MFGLNELNWYSEPKYWPFILPLINLWKGVGYGCVIYLAAIIGIDSEYYEAALIDGASKWK 229 +FG+ ++WY+EPKYWP IL ++ LWK VG+ C+I+LA+II ID EYYEAA +DGASKW+ Sbjct: 149 LFGIESISWYTEPKYWPVILTVVQLWKSVGFSCIIFLASIISIDPEYYEAARLDGASKWR 208 Query: 230 QILHXXXXXXXXXXXXXXXXXXXXXFRSDFGLFYQTTLNSGALYPTTLVIDTYVYNALIN 289 QI F SDFGLFYQ +NSG L TT VIDTYVY +L+ Sbjct: 209 QIQSITIPLITPVIVMLTLLSIGRMFYSDFGLFYQVPMNSGMLNDTTNVIDTYVYRSLMI 268 Query: 290 MGNLGMSAAAGLYQSIVGFFLVLGSNWIVRKVDKDQAVF 328 MG++GM++AAG+YQSIVGF LVL +N+IVRK +++ A+F Sbjct: 269 MGDIGMASAAGVYQSIVGFVLVLSANYIVRKFNRENALF 307 >B1DGM9.1 B1DGM9_9BACL Binding-protein-dependent transport systems inner membrane component Length = 310 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 156/279 (55%), Positives = 211/279 (75%) Query: 50 INNYLPMFGIIIAFKNINYVDGILGSPWVGLDNFKFLFATSDAWIITRNTVLYNFVFIIL 109 +NNY+P+FG+ IAFK+IN+ G+ S W+G NF++LF TSDAW+ITRNT+LYN VFI+L Sbjct: 32 VNNYMPLFGLSIAFKDINFRKGLWHSDWIGFRNFEYLFKTSDAWLITRNTLLYNVVFIVL 91 Query: 110 NLVIAVSIAIALNELKNKLAAKFYQSVMFFPYFLSMVVVSYLVFAFLNVEYGFINKGILA 169 L +AV+IAI LNE++++ A++ YQSV+ P+ +S+++VSYLV+A L+++ GFINK IL Sbjct: 92 GLALAVAIAILLNEIRSRFASRLYQSVIILPFLISIILVSYLVYAMLSIDTGFINKTILP 151 Query: 170 MFGLNELNWYSEPKYWPFILPLINLWKGVGYGCVIYLAAIIGIDSEYYEAALIDGASKWK 229 G+ +NWY+EPKYWP+IL +++LWKG GY C+++LAAIIGID EYYEAA +DGASKW Sbjct: 152 ALGMEPINWYNEPKYWPYILTIVHLWKGAGYSCIVFLAAIIGIDPEYYEAAKLDGASKWL 211 Query: 230 QILHXXXXXXXXXXXXXXXXXXXXXFRSDFGLFYQTTLNSGALYPTTLVIDTYVYNALIN 289 QI F SDFGLFYQ +NSGAL+ TT VIDTYV+ L+ Sbjct: 212 QIRKITIPMITPVIIMLTLLGIGRIFYSDFGLFYQVPMNSGALFSTTNVIDTYVFRGLMQ 271 Query: 290 MGNLGMSAAAGLYQSIVGFFLVLGSNWIVRKVDKDQAVF 328 +G++GMSAAAG YQS+VGF LVL SN +VRK++K+ A+F Sbjct: 272 LGDIGMSAAAGFYQSLVGFVLVLVSNLVVRKINKENALF 310 >B9MPG0.1 B9MPG0_ANATD Binding-protein-dependent transport systems inner membrane component Length = 313 Score = 315 bits (808), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 159/277 (57%), Positives = 200/277 (72%) Query: 52 NYLPMFGIIIAFKNINYVDGILGSPWVGLDNFKFLFATSDAWIITRNTVLYNFVFIILNL 111 +YLP+FG+IIAFK+++Y GIL SPWVGL NF+FLF T DA+IITRNT+LYNF FI+ Sbjct: 37 SYLPLFGLIIAFKDVHYDVGILKSPWVGLKNFEFLFKTPDAFIITRNTLLYNFAFIVFGN 96 Query: 112 VIAVSIAIALNELKNKLAAKFYQSVMFFPYFLSMVVVSYLVFAFLNVEYGFINKGILAMF 171 + A++ A+AL+E++++ AKFYQSVMF PYFLS VVV+Y+ FAFL+++ G +N +L Sbjct: 97 LAAIATAVALSEMRSRFMAKFYQSVMFLPYFLSWVVVAYMAFAFLSIDLGILNTMVLPKL 156 Query: 172 GLNELNWYSEPKYWPFILPLINLWKGVGYGCVIYLAAIIGIDSEYYEAALIDGASKWKQI 231 GL + WY E K WP IL L NLWK GY VIYLAAI GID EYYEAALIDGASKW+QI Sbjct: 157 GLQPIAWYFETKPWPVILILANLWKYTGYNAVIYLAAITGIDPEYYEAALIDGASKWQQI 216 Query: 232 LHXXXXXXXXXXXXXXXXXXXXXFRSDFGLFYQTTLNSGALYPTTLVIDTYVYNALINMG 291 H F +DFGLFYQ +NSGALY T VIDTYVY L+ M Sbjct: 217 KHITIPLLSPLVVVLVLLGIGRIFYADFGLFYQLPMNSGALYDVTNVIDTYVYRTLMGMN 276 Query: 292 NLGMSAAAGLYQSIVGFFLVLGSNWIVRKVDKDQAVF 328 ++GM++AA YQSI+GF LVL SN IVR++D ++A+F Sbjct: 277 DIGMASAASFYQSIMGFILVLTSNLIVRRLDPEKALF 313 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.144 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,689,955,565 Number of extensions: 63638607 Number of successful extensions: 231455 Number of sequences better than 1.0e-05: 4145 Number of HSP's gapped: 228374 Number of HSP's successfully gapped: 4148 Length of query: 328 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 192 Effective length of database: 1,779,438,163 Effective search space: 341652127296 Effective search space used: 341652127296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)