BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0011.p (314 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1I1X7.1 B1I1X7_DESAP Binding-protein-dependent transport system... 286 1e-75 C1TBP0.1 C1TBP0_9FIRM ABC-type dipeptide/oligopeptide/nickel tra... 284 9e-75 Q65HR2.1 Q65HR2_BACLD Putative uncharacterized protein 223 1e-56 A8AR58.1 A8AR58_CITK8 Putative uncharacterized protein 217 1e-54 C1NFA2.1 C1NFA2_9ESCH Nickel transporter permease NikB 213 2e-53 >B1I1X7.1 B1I1X7_DESAP Binding-protein-dependent transport systems inner membrane component Length = 312 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 150/306 (49%), Positives = 203/306 (66%) Query: 9 YLVQRLLQIIPVLFGISIITFALMQITPGDPAEIMLRADGIKPTLEAIQATRHALGLDGP 68 YL +R+L ++PV+ G+SIITFAL+ + PGDPAEI+LRADG++PT EA+ R LGL+ P Sbjct: 4 YLFRRILYLLPVMLGVSIITFALINLAPGDPAEIILRADGMEPTAEAVAVLREELGLNDP 63 Query: 69 IHMQFVHWLYRVFHLDLGISYSSGLPVREELMSRFPATALLSGCSLLTAMLIALPLGIGS 128 +++Q+ WL+ V HLDLG S+ +G PV EEL SR PAT L+ +L+ +++A+P GI S Sbjct: 64 LYIQYGRWLWGVLHLDLGESFRTGRPVAEELFSRLPATLELTCAALVFMVILAVPAGILS 123 Query: 129 ALYPGSLLDRLGRACALFSVSVPXXXXXXXXXXXXAVKLKWFPVMGMEGWPSVVLPACTL 188 ALY +L+D LGR AL S+P +VKL PVMG G +VLPA TL Sbjct: 124 ALYRHTLVDHLGRLGALAGASLPGFWLGLVLIYLFSVKLGILPVMGRGGLEHLVLPAVTL 183 Query: 189 GFGMAGIYIRLIRSSLLEVLGKLYIKAARAKGLQEWKVIGGHALRNALLPSXXXXXXXXX 248 GFGMA +Y R++R+ +L+VLG+ YIK ARAKGL+E VIG HAL+NALLP+ Sbjct: 184 GFGMAAVYARVLRTGMLDVLGQDYIKVARAKGLKEKWVIGRHALKNALLPAVTLLGMSFG 243 Query: 249 XXXXXSVIVESIFSWPGIGKYAVEAIFAKDYTVIQGYXXXXXXXXXXXXXXXXXXHLLLN 308 +VIVE+IF+WPG+GK+AVE+IF +DY VIQGY ++ L+ Sbjct: 244 HLLGGAVIVETIFAWPGVGKFAVESIFNRDYPVIQGYALFMAVVFVLANLLVDISYVFLD 303 Query: 309 PRIRMR 314 PRIR+ Sbjct: 304 PRIRLE 309 >C1TBP0.1 C1TBP0_9FIRM ABC-type dipeptide/oligopeptide/nickel transport system, permease component Length = 316 Score = 284 bits (726), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 145/305 (47%), Positives = 198/305 (64%) Query: 9 YLVQRLLQIIPVLFGISIITFALMQITPGDPAEIMLRADGIKPTLEAIQATRHALGLDGP 68 YL++RL +IPV+FG+SIITFAL+ + PGDPAEI+LR+ G++PTLEA++A R GL+ Sbjct: 4 YLLKRLFYLIPVMFGVSIITFALINLAPGDPAEILLRSSGVEPTLEAVEAMREEFGLNNS 63 Query: 69 IHMQFVHWLYRVFHLDLGISYSSGLPVREELMSRFPATALLSGCSLLTAMLIALPLGIGS 128 ++MQ+ HWL +V LDLG S+ +G PV E++SRFPAT L+ +L +L+A+P GI + Sbjct: 64 VYMQYFHWLVKVLQLDLGNSFRTGQPVALEVLSRFPATLELTLAALFFMLLLAVPSGICA 123 Query: 129 ALYPGSLLDRLGRACALFSVSVPXXXXXXXXXXXXAVKLKWFPVMGMEGWPSVVLPACTL 188 ALY + +D R ALF S+P AVKL FPVMG GW +VLP+ TL Sbjct: 124 ALYKNAWIDHFSRLVALFGASMPAFWLGLLLIYILAVKLHLFPVMGRGGWSHLVLPSATL 183 Query: 189 GFGMAGIYIRLIRSSLLEVLGKLYIKAARAKGLQEWKVIGGHALRNALLPSXXXXXXXXX 248 GFG+A Y RL+RSS+L+VLG+ +IK ARAKGLQE +I HA+RNALLP Sbjct: 184 GFGLAATYTRLLRSSMLDVLGQDFIKVARAKGLQEKLIISRHAMRNALLPVVTVFGMSFG 243 Query: 249 XXXXXSVIVESIFSWPGIGKYAVEAIFAKDYTVIQGYXXXXXXXXXXXXXXXXXXHLLLN 308 + IVE+IF+WPG+G+ V++IF +DY VIQ Y ++ L+ Sbjct: 244 HLLGGTAIVETIFAWPGVGRLCVDSIFNRDYPVIQAYVLLMALVFVLVNLIVDISYVFLD 303 Query: 309 PRIRM 313 PRIR+ Sbjct: 304 PRIRL 308 >Q65HR2.1 Q65HR2_BACLD Putative uncharacterized protein Length = 313 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/284 (39%), Positives = 166/284 (58%) Query: 31 LMQITPGDPAEIMLRADGIKPTLEAIQATRHALGLDGPIHMQFVHWLYRVFHLDLGISYS 90 M+ PGDP + MLR D + T E I+A R LGLD P+++Q+ +W R F DLG SY+ Sbjct: 25 FMKAAPGDPVKQMLRVDDVAVTDEQIEAFREELGLDKPVYIQYWNWFKRFFQFDLGKSYT 84 Query: 91 SGLPVREELMSRFPATALLSGCSLLTAMLIALPLGIGSALYPGSLLDRLGRACALFSVSV 150 + PV +EL +FPAT LL+G SLL +LIA+P+G SALY +D L R AL ++ Sbjct: 85 THEPVIDELSRKFPATLLLTGASLLVMLLIAVPVGTLSALYRDRWIDHLSRLLALVGAAL 144 Query: 151 PXXXXXXXXXXXXAVKLKWFPVMGMEGWPSVVLPACTLGFGMAGIYIRLIRSSLLEVLGK 210 P +V+L W P MG + ++LP+ TLG M+G+Y+RL+RSSL+E LG+ Sbjct: 145 PSFWLGLILIDLFSVRLNWLPSMGAGTFKHLILPSLTLGIAMSGVYVRLVRSSLIESLGQ 204 Query: 211 LYIKAARAKGLQEWKVIGGHALRNALLPSXXXXXXXXXXXXXXSVIVESIFSWPGIGKYA 270 +I++ARA+G+ E ++ HA R+ L+P +VI+E +F++PG+GK Sbjct: 205 DFIRSARARGISEARIFFFHAFRHCLVPVITIFGVSLGSLLGGTVIIEVLFAYPGVGKLV 264 Query: 271 VEAIFAKDYTVIQGYXXXXXXXXXXXXXXXXXXHLLLNPRIRMR 314 V+AI +DY +IQGY + LNP IR++ Sbjct: 265 VDAIVQRDYPIIQGYILFMGIAVVLINLLVDLSYRYLNPEIRLK 308 >A8AR58.1 A8AR58_CITK8 Putative uncharacterized protein Length = 314 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 177/307 (57%) Query: 6 ILRYLVQRLLQIIPVLFGISIITFALMQITPGDPAEIMLRADGIKPTLEAIQATRHALGL 65 +LRY+V+R+L +IP++F S+I F ++++ GDPA LR + PT E + +TR LGL Sbjct: 1 MLRYIVRRILLLIPMIFAASVIIFLMLRMGTGDPALDYLRLSNLPPTPEMVASTRVMLGL 60 Query: 66 DGPIHMQFVHWLYRVFHLDLGISYSSGLPVREELMSRFPATALLSGCSLLTAMLIALPLG 125 D P+ +Q+ WL++ HLD GIS+++ PV E++++ PAT L+G +L+ +L ++PLG Sbjct: 61 DQPLVVQYGSWLWKALHLDFGISFATQRPVLEDVLNFLPATLQLAGAALVLILLTSVPLG 120 Query: 126 IGSALYPGSLLDRLGRACALFSVSVPXXXXXXXXXXXXAVKLKWFPVMGMEGWPSVVLPA 185 I +A + L D + R A VS+P +V LKW P MG GW ++LPA Sbjct: 121 IWAARHRDRLPDFIVRLIAFLGVSMPNFWLAFLLVMFFSVYLKWLPAMGYGGWQHIILPA 180 Query: 186 CTLGFGMAGIYIRLIRSSLLEVLGKLYIKAARAKGLQEWKVIGGHALRNALLPSXXXXXX 245 ++ F I RL+R+S+LEV G+ ++ AR +GL + H LRNA LP Sbjct: 181 VSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLNAKQTERRHILRNASLPMITAVGM 240 Query: 246 XXXXXXXXSVIVESIFSWPGIGKYAVEAIFAKDYTVIQGYXXXXXXXXXXXXXXXXXXHL 305 ++I+E+IF+WPG+G+YAV AIF +DY VIQ + + Sbjct: 241 HIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLIMVVVFVVCNLIVDLLNA 300 Query: 306 LLNPRIR 312 L+PRIR Sbjct: 301 ALDPRIR 307 >C1NFA2.1 C1NFA2_9ESCH Nickel transporter permease NikB Length = 314 Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 177/307 (57%) Query: 6 ILRYLVQRLLQIIPVLFGISIITFALMQITPGDPAEIMLRADGIKPTLEAIQATRHALGL 65 +LRY+++R L +IP++ S+I F ++++ GDPA LR + PT E + +TR LGL Sbjct: 1 MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGL 60 Query: 66 DGPIHMQFVHWLYRVFHLDLGISYSSGLPVREELMSRFPATALLSGCSLLTAMLIALPLG 125 D P+++Q+ WL++ HLD GIS++S PV +++++ PAT L+G +L+ +L ++PLG Sbjct: 61 DQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLG 120 Query: 126 IGSALYPGSLLDRLGRACALFSVSVPXXXXXXXXXXXXAVKLKWFPVMGMEGWPSVVLPA 185 I +A + L D R A +VS+P +V L+W P MG GW ++LPA Sbjct: 121 IWAARHRDRLPDFAVRFIAFLAVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPA 180 Query: 186 CTLGFGMAGIYIRLIRSSLLEVLGKLYIKAARAKGLQEWKVIGGHALRNALLPSXXXXXX 245 ++ F I RL+R+S+L+V G+ ++ AR +GL + + H LRNA LP Sbjct: 181 VSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERRHILRNASLPMITAVGM 240 Query: 246 XXXXXXXXSVIVESIFSWPGIGKYAVEAIFAKDYTVIQGYXXXXXXXXXXXXXXXXXXHL 305 ++I+E+IF+WPG+G+YAV AIF +DY VIQ + + Sbjct: 241 HIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNA 300 Query: 306 LLNPRIR 312 L+PRIR Sbjct: 301 ALDPRIR 307 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.144 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,525,902,912 Number of extensions: 55279209 Number of successful extensions: 188206 Number of sequences better than 1.0e-05: 5869 Number of HSP's gapped: 174510 Number of HSP's successfully gapped: 6534 Length of query: 314 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 179 Effective length of database: 1,788,859,178 Effective search space: 320205792862 Effective search space used: 320205792862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)