BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0009.p (261 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5WAL6.1 Q5WAL6_BACSK Oligopeptide ABC transporter ATP-binding p... 275 4e-72 B9KBE9.1 B9KBE9_THENN Oligopeptide/dipeptide ABC transporter, AT... 272 2e-71 B1I1X9.1 B1I1X9_DESAP Oligopeptide/dipeptide ABC transporter, AT... 271 5e-71 B1L8Z2.1 B1L8Z2_THESQ Oligopeptide/dipeptide ABC transporter, AT... 270 8e-71 A5IJS0.1 A5IJS0_THEP1 Oligopeptide/dipeptide ABC transporter, AT... 270 8e-71 >Q5WAL6.1 Q5WAL6_BACSK Oligopeptide ABC transporter ATP-binding protein Length = 326 Score = 275 bits (702), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 135/256 (52%), Positives = 189/256 (73%), Gaps = 1/256 (0%) Query: 6 PLLRIRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLLDPPG 65 P+L++ +LRT F T + +V AVDD+S V+ + V LVGESGCGKSVTAMS++GLL Sbjct: 4 PILQVSNLRTCFQTDEGSVKAVDDISFSVKQGETVCLVGESGCGKSVTAMSIMGLLQGQA 63 Query: 66 RVEKGEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETVMLHKK 125 V G + L GN L SK E+R+LR E+A+IFQ+PM +L+P+L IG+Q+ E ++ HK Sbjct: 64 SV-TGRMELAGNELTTLSKGEMRRLRGNELAMIFQEPMTSLNPVLTIGEQMIEVLLEHKP 122 Query: 126 VSRKEAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLIADEPT 185 +S+K+A+ ALE ++R G+ E + YP Q+SGGM QR+MIAIAL ++LIADEPT Sbjct: 123 ISKKQARMKALELIKRVGIGREEQVLKSYPHQMSGGMLQRIMIAIALACEPKMLIADEPT 182 Query: 186 TALDVMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAGNVYTL 245 TALDV QA+IL+ L +++ ++G+ +LLITHD GVVAE+ADYV VM +GKI+E G+V+ + Sbjct: 183 TALDVTIQAQILELLKQLKDSQGMSMLLITHDLGVVAEVADYVVVMYAGKIIEQGSVHEI 242 Query: 246 FANPVHPYTRQLLSSR 261 F NP HPYT+ LL ++ Sbjct: 243 FFNPKHPYTKGLLQAK 258 >B9KBE9.1 B9KBE9_THENN Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 333 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 136/255 (53%), Positives = 184/255 (72%) Query: 6 PLLRIRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLLDPPG 65 PLLR+ +L+T F T+D V AVD VS +V + + +VGESG GKSVT++S++ LLD G Sbjct: 4 PLLRVENLKTYFYTEDGVVKAVDGVSFDVFEGETLGIVGESGSGKSVTSLSIMRLLDQNG 63 Query: 66 RVEKGEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETVMLHKK 125 R+E G++ G NL E S+ E+RK+R KEIA+IFQ+PM AL+P+ IG QI E +MLH+ Sbjct: 64 RIEDGKIVFKGKNLLELSESEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIMLHQN 123 Query: 126 VSRKEAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLIADEPT 185 VS KEA+ +A++ +R+ G+ +PE +YP Q+SGGM QR MIA+AL LLIADEPT Sbjct: 124 VSEKEARKMAIDMLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPT 183 Query: 186 TALDVMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAGNVYTL 245 TALDV QA+IL+ + ++ G+ I+LITHD GVVAE++D V VM +GK+VE G+V T+ Sbjct: 184 TALDVTIQAQILELMKELQREYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTI 243 Query: 246 FANPVHPYTRQLLSS 260 F P HPYT LL S Sbjct: 244 FNEPKHPYTYALLES 258 >B1I1X9.1 B1I1X9_DESAP Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 324 Score = 271 bits (693), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 137/255 (53%), Positives = 181/255 (70%) Query: 6 PLLRIRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLLDPPG 65 P+L++ +L T F T+ + A D VS V + + LVGESGCGKSVTA+S+L L++PPG Sbjct: 5 PVLKVNNLSTHFHTRHGVIKAADRVSFTVAAGKTLGLVGESGCGKSVTALSILRLIEPPG 64 Query: 66 RVEKGEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETVMLHKK 125 R+ GEVWL G NL + +LR++R +EIA++FQDP+ +L+P+L IG Q+ ET++ H++ Sbjct: 65 RILSGEVWLNGCNLLKLPPGQLRQVRGREIALVFQDPLTSLNPVLTIGTQLAETIVSHEE 124 Query: 126 VSRKEAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLIADEPT 185 VSR EA+ E + R GL DPE L YPFQ+SGGM QRVM+A+AL ++LIADEPT Sbjct: 125 VSRAEARRRVAELLLRVGLPDPERLMRLYPFQLSGGMRQRVMMAMALSLRPKVLIADEPT 184 Query: 186 TALDVMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAGNVYTL 245 TALDV QA+IL EL R++ G+ I+LITHD GVVA +AD V VM +G IVE G V + Sbjct: 185 TALDVTVQAQILAELKRLQEELGMAIILITHDLGVVAAMADEVAVMYAGSIVERGPVAQV 244 Query: 246 FANPVHPYTRQLLSS 260 F P HPYTR LL S Sbjct: 245 FDRPAHPYTRALLRS 259 >B1L8Z2.1 B1L8Z2_THESQ Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 334 Score = 270 bits (691), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 135/255 (52%), Positives = 184/255 (72%) Query: 6 PLLRIRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLLDPPG 65 PLLR+ +L+T F T+D V AVD VS EVR + + +VGESG GKSVT++S++ LLD G Sbjct: 4 PLLRVENLKTYFYTEDGVVKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQNG 63 Query: 66 RVEKGEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETVMLHKK 125 ++ G++ G NL E S+ E+RK+R KEIA+IFQ+PM AL+P+ IG QI E ++LH+ Sbjct: 64 KIVDGKIIFKGRNLLELSESEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQN 123 Query: 126 VSRKEAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLIADEPT 185 VS KEA+ +A++ +R+ G+ +PE +YP Q+SGGM QR MIA+AL LLIADEPT Sbjct: 124 VSEKEARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPT 183 Query: 186 TALDVMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAGNVYTL 245 TALDV QA+IL+ + ++ G+ I+LITHD GVVAE++D V VM +GK+VE G+V T+ Sbjct: 184 TALDVTIQAQILELMKELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTI 243 Query: 246 FANPVHPYTRQLLSS 260 F P HPYT LL S Sbjct: 244 FTEPKHPYTYALLES 258 >A5IJS0.1 A5IJS0_THEP1 Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 334 Score = 270 bits (691), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 135/255 (52%), Positives = 184/255 (72%) Query: 6 PLLRIRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLLDPPG 65 PLLR+ +L+T F T+D V AVD VS EVR + + +VGESG GKSVT++S++ LLD G Sbjct: 4 PLLRVENLKTYFYTEDGVVKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQNG 63 Query: 66 RVEKGEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETVMLHKK 125 ++ G++ G NL E S+ E+RK+R KEIA+IFQ+PM AL+P+ IG QI E ++LH+ Sbjct: 64 KIVDGKIIFKGRNLLELSESEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQN 123 Query: 126 VSRKEAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLIADEPT 185 VS KEA+ +A++ +R+ G+ +PE +YP Q+SGGM QR MIA+AL LLIADEPT Sbjct: 124 VSEKEARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPT 183 Query: 186 TALDVMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAGNVYTL 245 TALDV QA+IL+ + ++ G+ I+LITHD GVVAE++D V VM +GK+VE G+V T+ Sbjct: 184 TALDVTIQAQILELMKELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTI 243 Query: 246 FANPVHPYTRQLLSS 260 F P HPYT LL S Sbjct: 244 FTEPKHPYTYALLES 258 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,467,593,267 Number of extensions: 56854247 Number of successful extensions: 441106 Number of sequences better than 1.0e-05: 75353 Number of HSP's gapped: 368329 Number of HSP's successfully gapped: 80292 Length of query: 261 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 128 Effective length of database: 1,807,701,208 Effective search space: 231385754624 Effective search space used: 231385754624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)