BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0008.p (271 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4RAK9.1 C4RAK9_9ACTO ABC oligopeptide transporter ATP-binding p... 231 5e-59 A4ECM5.1 A4ECM5_9ACTN Putative uncharacterized protein 227 7e-58 B9LIN3.1 B9LIN3_CHLSY Oligopeptide/dipeptide ABC transporter, AT... 227 8e-58 A9WGD7.1 A9WGD7_CHLAA Oligopeptide/dipeptide ABC transporter, AT... 227 8e-58 Q73N84.1 Q73N84_TREDE Oligopeptide/dipeptide ABC transporter, AT... 227 1e-57 >C4RAK9.1 C4RAK9_9ACTO ABC oligopeptide transporter ATP-binding protein Length = 337 Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 122/265 (46%), Positives = 173/265 (65%), Gaps = 2/265 (0%) Query: 3 LLEAVELSKVYG-REGRWFKPDIQKIAAVNHLSLRLKPHENXXXXXXXXXXXXXXARLLL 61 +LE +L K Y G FK I + AV+ +SL L+ E AR+L+ Sbjct: 5 ILEVRDLVKHYPVTRGVVFKKTIGHVKAVDGVSLELRAGETLGVVGESGCGKSTLARVLM 64 Query: 62 GLERPSSGRVLYQGTDFTDWSLSKMRRIRGKLQVVFQNSPASFNPLFTVEQIIGEPLRNY 121 LERP++G V Y+G D + S +RR+R ++Q+V Q+ S NP TV +IGEP + Sbjct: 65 NLERPTAGSVNYKGQDISKLSGGALRRLRRQIQLVMQDPYTSLNPRMTVGDLIGEPFEIH 124 Query: 122 G-MGNVRARRDRVAKTLELVGLEGRYLYRYPHELSGGQQQRIGIARAIALRPELIICDEP 180 + +RR++V + L+LVGL ++ RYPH+ SGGQ+QRIGIARA+ALRPE+I+CDEP Sbjct: 125 PEVAPKGSRREKVKELLDLVGLNPEHINRYPHQFSGGQRQRIGIARALALRPEIIVCDEP 184 Query: 181 FSSLDASLRRQMMNLLQELKAQLGLAYIFITHDLSVVSRFCDRAAVMHQGQIVEEQTGGG 240 S+LD S++ Q+MNLL++L+A+ GL+Y+FI HDLSVV DR AVM+ G+IVE T Sbjct: 185 VSALDVSIQAQVMNLLEKLQAEFGLSYVFIAHDLSVVRHLSDRVAVMYLGKIVEIGTEDE 244 Query: 241 LMKQAVHPYTQKLIASVPVQDPRLR 265 + ++ HPYTQ L+++VPV DP LR Sbjct: 245 IYERPTHPYTQALLSAVPVPDPTLR 269 >A4ECM5.1 A4ECM5_9ACTN Putative uncharacterized protein Length = 342 Score = 227 bits (579), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 113/270 (41%), Positives = 170/270 (62%), Gaps = 2/270 (0%) Query: 3 LLEAVELSKVYGREGRWFKPDIQK--IAAVNHLSLRLKPHENXXXXXXXXXXXXXXARLL 60 LL+ LSK + E F K ++AVN +S + P E R + Sbjct: 10 LLKVEHLSKEFPAESGMFAKRFSKRVVSAVNDISFEIYPGETFGLVGESGCGKSTTGRTI 69 Query: 61 LGLERPSSGRVLYQGTDFTDWSLSKMRRIRGKLQVVFQNSPASFNPLFTVEQIIGEPLRN 120 + L +P++G+V +QG D + S +++ +R ++Q +FQ+ AS NP T+ +I+ EP+ Sbjct: 70 MRLTKPTAGKVFFQGKDVAEMSKHEIKDMRREMQFIFQDPYASLNPRMTIGEIVSEPMTI 129 Query: 121 YGMGNVRARRDRVAKTLELVGLEGRYLYRYPHELSGGQQQRIGIARAIALRPELIICDEP 180 +G+G R +RV + L++VGL ++ RYPHE SGGQ+QR+GIARA AL+P+LIICDEP Sbjct: 130 HGVGTKEERIERVRELLDVVGLNPEHINRYPHEFSGGQRQRVGIARAFALKPKLIICDEP 189 Query: 181 FSSLDASLRRQMMNLLQELKAQLGLAYIFITHDLSVVSRFCDRAAVMHQGQIVEEQTGGG 240 S+LD S++ Q++NLL+EL+ + G AY+FI HDLSVV DR AVM+ G++VE Sbjct: 190 VSALDVSIQAQVLNLLKELQDKFGTAYLFIAHDLSVVQHISDRVAVMYLGKMVEVSDWKT 249 Query: 241 LMKQAVHPYTQKLIASVPVQDPRLRKSDDR 270 L + HPYTQ L+++VPV DP ++K+ R Sbjct: 250 LYSEPHHPYTQSLLSAVPVPDPDIQKTRKR 279 >B9LIN3.1 B9LIN3_CHLSY Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 367 Score = 227 bits (579), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 117/270 (43%), Positives = 172/270 (63%), Gaps = 1/270 (0%) Query: 2 YLLEAVELSKVYG-REGRWFKPDIQKIAAVNHLSLRLKPHENXXXXXXXXXXXXXXARLL 60 YL+E +L + G F+ + + AV+ +S +K E R + Sbjct: 11 YLIEIKDLRMYFPVTRGIIFQRRVGTVKAVDGVSFSIKRGETLGLVGESGCGKSTTGRAI 70 Query: 61 LGLERPSSGRVLYQGTDFTDWSLSKMRRIRGKLQVVFQNSPASFNPLFTVEQIIGEPLRN 120 L L RP+SG+VL++GTD T + +R++R ++Q++FQ+ AS NP TV II EP+R Sbjct: 71 LQLYRPTSGQVLFEGTDLTKLKGNALRQMRRRVQMIFQDPYASLNPRMTVGDIIAEPIRV 130 Query: 121 YGMGNVRARRDRVAKTLELVGLEGRYLYRYPHELSGGQQQRIGIARAIALRPELIICDEP 180 + + RA R+RV + L LVGL + RYPHE SGGQ+QRIGIARA+A+ P+ ++CDEP Sbjct: 131 HKLREGRAVRERVEELLHLVGLNPAFANRYPHEFSGGQRQRIGIARALAVEPDFVVCDEP 190 Query: 181 FSSLDASLRRQMMNLLQELKAQLGLAYIFITHDLSVVSRFCDRAAVMHQGQIVEEQTGGG 240 S+LD S++ Q++NLL+EL+ +LGL Y+FI HDLSVV+ DR AVM+ G++VE G Sbjct: 191 VSALDVSIQAQVVNLLEELQDKLGLTYLFIAHDLSVVNHISDRVAVMYLGKVVELAEGPK 250 Query: 241 LMKQAVHPYTQKLIASVPVQDPRLRKSDDR 270 L +HPYTQ L+++VP+ DP++ K R Sbjct: 251 LYSMPLHPYTQALLSAVPIPDPKVEKQRRR 280 >A9WGD7.1 A9WGD7_CHLAA Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 367 Score = 227 bits (579), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 117/270 (43%), Positives = 172/270 (63%), Gaps = 1/270 (0%) Query: 2 YLLEAVELSKVYG-REGRWFKPDIQKIAAVNHLSLRLKPHENXXXXXXXXXXXXXXARLL 60 YL+E +L + G F+ + + AV+ +S +K E R + Sbjct: 11 YLIEIKDLRMYFPVTRGIIFQRRVGTVKAVDGVSFSIKRGETLGLVGESGCGKSTTGRAI 70 Query: 61 LGLERPSSGRVLYQGTDFTDWSLSKMRRIRGKLQVVFQNSPASFNPLFTVEQIIGEPLRN 120 L L RP+SG+VL++GTD T + +R++R ++Q++FQ+ AS NP TV II EP+R Sbjct: 71 LQLYRPTSGQVLFEGTDLTKLKGNALRQMRRRVQMIFQDPYASLNPRMTVGDIIAEPIRV 130 Query: 121 YGMGNVRARRDRVAKTLELVGLEGRYLYRYPHELSGGQQQRIGIARAIALRPELIICDEP 180 + + RA R+RV + L LVGL + RYPHE SGGQ+QRIGIARA+A+ P+ ++CDEP Sbjct: 131 HKLREGRAVRERVEELLHLVGLNPAFANRYPHEFSGGQRQRIGIARALAVEPDFVVCDEP 190 Query: 181 FSSLDASLRRQMMNLLQELKAQLGLAYIFITHDLSVVSRFCDRAAVMHQGQIVEEQTGGG 240 S+LD S++ Q++NLL+EL+ +LGL Y+FI HDLSVV+ DR AVM+ G++VE G Sbjct: 191 VSALDVSIQAQVVNLLEELQDKLGLTYLFIAHDLSVVNHISDRVAVMYLGKVVELAEGPK 250 Query: 241 LMKQAVHPYTQKLIASVPVQDPRLRKSDDR 270 L +HPYTQ L+++VP+ DP++ K R Sbjct: 251 LYSMPLHPYTQALLSAVPIPDPKVEKQRRR 280 >Q73N84.1 Q73N84_TREDE Oligopeptide/dipeptide ABC transporter, ATP-binding protein Length = 323 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 110/266 (41%), Positives = 169/266 (63%) Query: 2 YLLEAVELSKVYGREGRWFKPDIQKIAAVNHLSLRLKPHENXXXXXXXXXXXXXXARLLL 61 YLLE + LSK + F + + + AVN++++++KP E R +L Sbjct: 5 YLLETINLSKHFSESKSLFNWNPKSVKAVNNVNIKVKPKEVLGLVGESGCGKSTLGRTIL 64 Query: 62 GLERPSSGRVLYQGTDFTDWSLSKMRRIRGKLQVVFQNSPASFNPLFTVEQIIGEPLRNY 121 L +SG++LY+G D ++ +M +R K+Q++FQ+ +S NP TV I+ PL + Sbjct: 65 RLLPATSGKILYKGDDILKYNNKQMFELRKKMQIIFQDVYSSLNPRMTVGDIVTAPLNVF 124 Query: 122 GMGNVRARRDRVAKTLELVGLEGRYLYRYPHELSGGQQQRIGIARAIALRPELIICDEPF 181 G+ + R+++V + LE VGL +YL R+PHE SGGQ+QRI IAR++ + PEL+ICDEP Sbjct: 125 KEGDKKYRQNKVIEMLEEVGLRAQYLNRFPHEFSGGQRQRIVIARSLIMNPELVICDEPV 184 Query: 182 SSLDASLRRQMMNLLQELKAQLGLAYIFITHDLSVVSRFCDRAAVMHQGQIVEEQTGGGL 241 S+LD S+R Q++NL+++LK + GL YIFI+HDLSVV+ DR AVM+ G ++E L Sbjct: 185 SALDVSVRAQVLNLMKKLKEEKGLTYIFISHDLSVVNHISDRIAVMYLGNVIELAERDEL 244 Query: 242 MKQAVHPYTQKLIASVPVQDPRLRKS 267 K A HPYT+ L+++VP+ RK+ Sbjct: 245 FKNAFHPYTKALLSAVPIASTEARKN 270 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,477,143,260 Number of extensions: 55455834 Number of successful extensions: 300278 Number of sequences better than 1.0e-05: 70705 Number of HSP's gapped: 267475 Number of HSP's successfully gapped: 74328 Length of query: 271 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 138 Effective length of database: 1,807,701,208 Effective search space: 249462766704 Effective search space used: 249462766704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)