BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0007.p (534 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1TE81.1 C1TE81_9FIRM ABC-type dipeptide transport system, perip... 481 e-134 C0CHZ8.1 C0CHZ8_9FIRM Putative uncharacterized protein 460 e-127 Q8TKF2.1 Q8TKF2_METAC Nickel ABC transporter, solute-binding pro... 431 e-118 Q46F87.1 Q46F87_METBF Nickel ABC transporter, solute-binding pro... 397 e-108 Q4LA69.1 Q4LA69_STAHJ Similar to nickel ABC transporter 329 4e-88 >C1TE81.1 C1TE81_9FIRM ABC-type dipeptide transport system, periplasmic component Length = 558 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 254/536 (47%), Positives = 335/536 (62%), Gaps = 13/536 (2%) Query: 2 IILAAFIMIAGCXXXXXXXXXXDATGQPPGGQEKAVTVAISADPGIDQLDAGAYKGAMSV 61 +++ ++I+ C D+ PG +E V VAI D + +LDA Y G + Sbjct: 32 LLICTCLIISACGKN-------DSVSSKPGVKE--VVVAIYRDGAMGELDAATYNGPHFL 82 Query: 62 HAMIYDGLVEYGEKGSILPALAESWDISEDGKVYTFHLRHGVKFSDGTDFNAAAVKFSFE 121 + MIYDG VE G G ILP LA SW IS DGK YTF LR GVKFSDGTDFNA AV F+ + Sbjct: 83 YKMIYDGFVEDGGDGKILPQLATSWIISPDGKTYTFKLRKGVKFSDGTDFNADAVIFNLK 142 Query: 122 RWMNDPANSLNVAAALQSIDVIDDHTLTMTFNKTYYPFLTELSFARPVRIISPSAVEP-A 180 RW+N+ +++ + ++S++ +D+ T+ + F YP LTEL++ RPVR +SPS+V A Sbjct: 143 RWVNNKRHAILKSVNVESMEDVDNDTVKIVFKDGAYPILTELTYPRPVRFLSPSSVTAVA 202 Query: 181 GAVTGKFVKAVGTGAWMAESYKTDQEAVLVRNPYYWGEAPKLSKIILKVIPDPQSRVLAL 240 G V GKF K VGTG WM ESYK DQE LV NPYYWGE PKL +I KVI D Q+RVLAL Sbjct: 203 GDVMGKFTKPVGTGPWMLESYKKDQEFTLVPNPYYWGEKPKLDRITFKVITDGQARVLAL 262 Query: 241 QSGAADIAGGQ-PGKLPVESVPVIESDSSLSLQKAPGTNSHFLIFNYNTPALQDLNVRKA 299 QSG DI GG K+P+ES +++ + SHF+ FN A QD NVR A Sbjct: 263 QSGEVDILGGDLVSKIPMESFLELKNSGKFTTYTKGTMCSHFISFNQKVEAFQDRNVRLA 322 Query: 300 MNLAINKKSIIDDLLDGIGSEAKGLFPLTVPYVTDQNNTWYGFDPDEAKQLLAEAGYSDS 359 MN AINKKSI+ DL D IG EA GL+ VPY TD+NN + D ++AKQL AGY D+ Sbjct: 323 MNYAINKKSIVTDLFDNIGFEANGLYQKGVPYTTDENNYGFANDKEKAKQLFDTAGYVDT 382 Query: 360 NGDGIVEKDGAALEFSFVLQQAEFPEWKSVSELIQSELKAIGIAVNLQILEPNAYYDALW 419 NGDGI +K+G LEF+FVL EFPEWK ++E +QSE ++GI VNL I++ N Y DA Sbjct: 383 NGDGIRDKNGKNLEFNFVLSTEEFPEWKPLAEFVQSEFSSVGIKVNLNIMDKNGYEDATM 442 Query: 420 TTKAYDLIMYRTYDDAYNPHAFLLSLFHKTAEAPAV-AWSDAELESFIDTAVGSTDLLVR 478 TKA+D+ + RT D++ PH +L LF + + A AW D L + I + S D R Sbjct: 443 NTKAFDIALMRTSSDSWVPHGSMLELFSILSTSNAAKAWYDEGLYNNIIKTLNSIDERER 502 Query: 479 QKAYDSIFGRLYEEAMFGALYFPDEVMAVNK-RVKGFKPGYTTFTPVFWNQLDVGE 533 QK YD +F + EEA+ +Y+P AVN ++KGF+ G ++ P+ W +LDV + Sbjct: 503 QKNYDKVFKFISEEALTIPIYYPITSFAVNSDKIKGFEIGVNSYAPIEWQKLDVKQ 558 >C0CHZ8.1 C0CHZ8_9FIRM Putative uncharacterized protein Length = 529 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 232/533 (43%), Positives = 332/533 (62%), Gaps = 19/533 (3%) Query: 1 MIILAAFIMIAGCXXXXXXXXXXDATGQPPGGQEKAVTVAISADPGIDQLDA-GAYKGAM 59 + ++ A ++ AGC D+ GQ K +T +S+D ++ D Sbjct: 12 LTVVGATLLTAGCGKKEQTAAQGDSDGQ------KVITALVSSDLKPEEADTISGINEDF 65 Query: 60 SVHAMIYDGLVEYGEKGSILPALAESWDISEDGKVYTFHLRHGVKFSDGTDFNAAAVKFS 119 + M++D LV YGE G I PALAESW+ISEDGK YTFHLR VKFSDGT FNA V F+ Sbjct: 66 RLFEMVFDPLVRYGEGGEIEPALAESWEISEDGKSYTFHLRKDVKFSDGTKFNADNVIFN 125 Query: 120 FERWMNDPANSLNVAAALQSIDVIDDHTLTMTFNKTYYPFLTELSFARPVRIISPSAVEP 179 RW D + +A L + +DD+T+T F++ YP L E ++ RP R++ + V+ Sbjct: 126 ASRW--DEKQTF--SAKLLDVKKVDDYTVTFEFDQVAYPCLIEFTYPRPYRMLGENGVDE 181 Query: 180 AGAVTGKFVKAVGTGAWMAESYKTDQEAVLVRNPYYWGEAPKLSKIILKVIPDPQSRVLA 239 G F + +GTG WM ESYKT+QE VLV NP Y+ +APK+ K++LK++ D Q+R +A Sbjct: 182 EG----NFKEMIGTGQWMIESYKTNQEVVLVPNPNYYADAPKVDKVVLKLVDDGQARTMA 237 Query: 240 LQSGAADIAGGQPGKLPVESVPVIESDSSLSLQKAPGTNSHFLIFNYNTPALQDLNVRKA 299 LQSG DI LP ES PVIE D +L +A T +++LI NY L+D VR+A Sbjct: 238 LQSGEVDIC---LADLPTESWPVIEQDENLEEFEAHATQTYYLILNYENEFLKDEKVRQA 294 Query: 300 MNLAINKKSIIDDLLDGIGSEAKGLFPLTVPYVTDQNNTWYGFDPDEAKQLLAEAGYSDS 359 +N I+K +++DLLDG G+ AKGLFP PYVTD+N+ Y ++P++AK+LL EAGY D+ Sbjct: 295 LNYGIDKNGLVNDLLDGDGTPAKGLFPDNTPYVTDENSPGYTYEPEKAKELLKEAGYEDT 354 Query: 360 NGDGIVEKDGAALEFSFVLQQAEFPEWKSVSELIQSELKAIGIAVNLQILEPNAYYDALW 419 +GDGIVEK G L V Q E+ WK++ E +QSE + IG+ + L +E AYYDA+W Sbjct: 355 DGDGIVEKGGKKLSLRLVFQTEEYANWKTICEYLQSEYEKIGVEIELNQMESAAYYDAIW 414 Query: 420 TTKAYDLIMYRTYDDAYNPHAFLLSLFHKTAEAPAVAWSDAELESFIDTAVGSTDLLVRQ 479 +T+ YD+IMYR+Y+D++NPH FL S+F++T PAV W D ++ + I + + D R Sbjct: 415 STRDYDMIMYRSYEDSWNPHGFLSSMFYQTEGNPAVCWYDEQISTQIGQVLQTLDENKRT 474 Query: 480 KAYDSIFGRLYEEAMFGALYFPDEVMAVNK-RVKGFKPGYTTFTPVFWNQLDV 531 + YDSI GR+ E+A+ LY+P +V NK R+ G + T++ + W +DV Sbjct: 475 ELYDSILGRMDEQAVTVPLYYPRKVYVYNKNRLTGIEEASTSYEAIHWGTVDV 527 >Q8TKF2.1 Q8TKF2_METAC Nickel ABC transporter, solute-binding protein Length = 538 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/503 (41%), Positives = 318/503 (63%), Gaps = 12/503 (2%) Query: 31 GGQEKAVTVAISADPGIDQLDAGAYKGAMSVHAMIYDGLVEYGEKGSILPALAESWDISE 90 Q ++T+ +S + M ++ M+Y+ LV+YG+ G I P LAESW+IS+ Sbjct: 48 SNQSDSITIMVSGKLNPEDASPIESSTEMCLYEMVYEPLVKYGKDGVIEPGLAESWNISD 107 Query: 91 DGKVYTFHLRHGVKFSDGTDFNAAAVKFSFERWMNDPANSLNVAAALQSIDVIDDHTLTM 150 DG YTF+LR VKFSDGT FNA +V S +RW DP + L +++ +DD+T+ + Sbjct: 108 DGTQYTFYLRKDVKFSDGTGFNADSVVSSAKRW--DPTR---FSTPLTNVEKLDDYTVRL 162 Query: 151 TFNKTYYPFLTELSFARPVRIISPSAVEPAGAVTGKFVKAVGTGAWMAESYKTDQEAVLV 210 TF + YP L EL++ RP R SA E + G F+K +GTG WM ESY ++E V+V Sbjct: 163 TFKENSYPVLIELTYPRPFR----SASENSFDANGNFIKMIGTGEWMVESYVPEEEVVMV 218 Query: 211 RNPYYWGEAPKLSKIILKVIPDPQSRVLALQSGAADIAGGQPGKLPVESVPVIESDSSLS 270 NPYY+G P + KI ++ + D +SR++ALQ+G AD++ LP ES +IES +L+ Sbjct: 219 PNPYYYGTKPDIKKITIRKVTDGESRIMALQAGEADLSLAD---LPAESKSIIESSKNLA 275 Query: 271 LQKAPGTNSHFLIFNYNTPALQDLNVRKAMNLAINKKSIIDDLLDGIGSEAKGLFPLTVP 330 ++ A GT FL+ N ALQD NVR A+N AI+K SI++++L G G AKG+ P TVP Sbjct: 276 VKTAEGTMGFFLMLNQENEALQDKNVRLALNYAIDKDSIVENILGGDGVAAKGILPETVP 335 Query: 331 YVTDQNNTWYGFDPDEAKQLLAEAGYSDSNGDGIVEKDGAALEFSFVLQQAEFPEWKSVS 390 YVTD+N+ Y ++P++A++LLAE+GY+DSNGDGIVEKDG L V Q E+ WKS+ Sbjct: 336 YVTDENSEGYSYNPEKARELLAESGYTDSNGDGIVEKDGVPLSLKLVFQSEEYASWKSMC 395 Query: 391 ELIQSELKAIGIAVNLQILEPNAYYDALWTTKAYDLIMYRTYDDAYNPHAFLLSLFHKTA 450 E +Q+ + +GI + L+ + +AYYDA+W + +D+I+YRTY+D++NPH FL S+F++T Sbjct: 396 EYMQAAAREVGIDIQLEQRDTSAYYDAIWKNRDFDMIIYRTYEDSWNPHGFLRSMFYQTE 455 Query: 451 EAPAVAWSDAELESFIDTAVGSTDLLVRQKAYDSIFGRLYEEAMFGALYFPDEVMAVNKR 510 + +V W D +L +++D + + D RQ YD IF + +EA+ L +P++ A N R Sbjct: 456 GSTSVCWYDPQLNTYLDEVIKTQDETTRQAKYDRIFELINDEALVVPLCYPNKQYAYNTR 515 Query: 511 VKGFKPGYTTFTPVFWNQLDVGE 533 ++ T + + W L + + Sbjct: 516 LQNVTVAPTNYEGIEWQMLTMAK 538 >Q46F87.1 Q46F87_METBF Nickel ABC transporter, solute-binding protein Length = 538 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 201/530 (37%), Positives = 317/530 (59%), Gaps = 19/530 (3%) Query: 4 LAAFIMIAGCXXXXXXXXX-------XDATGQPPGGQEKAVTVAISADPGIDQLDAGAYK 56 L+ ++++GC D T Q ++T+ +S + Sbjct: 14 LSVVLLLSGCISNQASNNTQNEISDSSDTTATAVSNQSDSITIMVSGKLNPEDASPIESS 73 Query: 57 GAMSVHAMIYDGLVEYGEKGSILPALAESWDISEDGKVYTFHLRHGVKFSDGTDFNAAAV 116 M ++ M+Y+ LV+YG+ G I P LAE W+IS++G YTF+LR KFSDGT+ NA +V Sbjct: 74 TEMCLYEMVYEPLVKYGKGGVIEPELAERWEISDNGTQYTFYLRKDAKFSDGTNLNADSV 133 Query: 117 KFSFERWMNDPANSLNVAAALQSIDVIDDHTLTMTFNKTYYPFLTELSFARPVRIISPSA 176 S +RW N + + L +++ +DD+T+ +TF + YP L EL++ RP RI S ++ Sbjct: 134 VSSAKRW-----NPTSFSTPLTNVEKLDDYTVRLTFKENCYPVLIELTYPRPFRIASENS 188 Query: 177 VEPAGAVTGKFVKAVGTGAWMAESYKTDQEAVLVRNPYYWGEAPKLSKIILKVIPDPQSR 236 + G FVK +GTG WM ESY ++E V+V NPYY+G P ++KI ++ + + +SR Sbjct: 189 FDE----NGNFVKMIGTGEWMVESYVPEEEVVMVPNPYYYGTKPNINKITIRKVTEGESR 244 Query: 237 VLALQSGAADIAGGQPGKLPVESVPVIESDSSLSLQKAPGTNSHFLIFNYNTPALQDLNV 296 ++ALQSG AD++ LP ES +IES +L GT FL+ N LQD NV Sbjct: 245 IMALQSGEADLS---LADLPSESKSIIESSKNLGATTTEGTLGFFLMLNQENTVLQDENV 301 Query: 297 RKAMNLAINKKSIIDDLLDGIGSEAKGLFPLTVPYVTDQNNTWYGFDPDEAKQLLAEAGY 356 R A+N A++K SI++++ G AKG+ P TVPYVTD+N+ Y ++P++AK+LLA +GY Sbjct: 302 RLALNYAMDKDSIVENIFGGDAVAAKGILPDTVPYVTDENSKGYSYNPEKAKELLAGSGY 361 Query: 357 SDSNGDGIVEKDGAALEFSFVLQQAEFPEWKSVSELIQSELKAIGIAVNLQILEPNAYYD 416 +DS+GDGIV+KDG L V Q E+ WKS+ E +Q+ K +GI + L+ L+ +AYYD Sbjct: 362 TDSDGDGIVDKDGVPLSLKLVFQSEEYASWKSMCEYMQAAAKEVGIDIQLEQLDTSAYYD 421 Query: 417 ALWTTKAYDLIMYRTYDDAYNPHAFLLSLFHKTAEAPAVAWSDAELESFIDTAVGSTDLL 476 A+W + +D+I+YRTY+D++NPH FL S+F+++ + +V W D +L + +D + + D Sbjct: 422 AIWKNRDFDMIIYRTYEDSWNPHGFLRSMFYQSEGSTSVCWYDPQLNTDLDEVIKTQDET 481 Query: 477 VRQKAYDSIFGRLYEEAMFGALYFPDEVMAVNKRVKGFKPGYTTFTPVFW 526 RQ YD IF + ++A+ L +P++ N R++ T++ + W Sbjct: 482 TRQAKYDQIFKLINDKALVVPLCYPNKQYVYNTRLQNVTVAPTSYEGIEW 531 >Q4LA69.1 Q4LA69_STAHJ Similar to nickel ABC transporter Length = 517 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 189/536 (35%), Positives = 287/536 (53%), Gaps = 37/536 (6%) Query: 5 AAFIMIAGCXXXXXXXXXXDATGQPPGGQEKAVTVAISADPGIDQLDAGAYKGAMSVHAM 64 +A +++AGC ++K +TV++ + D+LDA Y AM V++ Sbjct: 12 SATLLLAGCGNDQK--------------EDKNITVSLPTEAKADKLDAQGYDAAMPVYSA 57 Query: 65 IYDGLVEYGEKGSILPALAESWDISEDGKVYTFHLRHGVKFSDGTDFNAAAVKFSFERWM 124 +YD LV+Y + + LAE W + E GKVY FHL+ VKFSDG+ +A AVKFS ER Sbjct: 58 VYDALVKYDKDKGVKAGLAEKWHVDESGKVYEFHLKKNVKFSDGSALDAKAVKFSIER-- 115 Query: 125 NDPANSLNVAAALQSIDVID------DHTLTMTFNKTYYPFLTELSFARPVRIISPSAVE 178 A ++N ++++ +D DH + + L EL+ RP+RI+SP +VE Sbjct: 116 ---AKAMNKDTTVETLKKLDKVVVKSDHVVQIRLKSPSNQVLNELTQVRPLRIMSPHSVE 172 Query: 179 PAGAVTGKFVKAVGTGAWMAESYKTDQEAVLVR-NPYYWGEAPKLSKIILKVIPDPQSRV 237 G V GKF KA+GTGA++ + KT +E ++ N Y+ P + + I D SR Sbjct: 173 -NGKVNGKFEKAIGTGAFVVD--KTGKEKTTMKPNKYFNHSHPVNYNLAFQTIEDGDSRN 229 Query: 238 LALQSGAADIAGGQPGKLPVESVPVIESDSSLSLQKAPGTNSHFLIFNYNTPALQDLNVR 297 A+QSG+ DI+GG G L + + + + +L+++ P T SHF+ FN + L+ +R Sbjct: 230 SAVQSGSVDISGGALGMLSDQQIKQDKKNKNLTVEDKPSTVSHFMAFNPDNDVLKQRTIR 289 Query: 298 KAMNLAINKKSIIDDLLDGIGSEAKGLFPLTVPYVTDQNNTWYGFDPDEAKQLLAEAGYS 357 +A++ +I+ K I G GLF V +V N + +D EA++LL EAGY Sbjct: 290 EAISKSIDTKDIA-------GKSVNGLFQKNVQFVNKDNQQAHDYDVKEAEKLLKEAGYH 342 Query: 358 DSNGDGIVEKDGAALEFSFVLQQAEFPEWKSVSELIQSELKAIGIAVNLQILEPNAYYDA 417 N DGI EK G L F+ V+Q AEFP WK +E +Q +LK GI +N++ L+ +YYD Sbjct: 343 -KNSDGIFEKTGKPLTFNLVIQTAEFPSWKDKAEKVQRQLKKAGIKLNVKTLDSQSYYDT 401 Query: 418 LWTTKAYDLIMYRTYDDAYNPHAFLLSLFHKTAEAPAVAWSDAELESFIDTAVGSTDLLV 477 LWT K YDLI YRTY DA P+ F+ S+F V +D L +D + Sbjct: 402 LWTKKDYDLIFYRTYSDALMPYNFMSSVFKNNDGKSGVLANDKTLTQQLDDFPTTVSKKE 461 Query: 478 RQKAYDSIFGRLYEEAMFGALYFPDEVMAVNKRVKGFKPGYTTFTPVFWNQLDVGE 533 +Q+++D IF ++ + +P+E V+ +VK FK T P+ + L V E Sbjct: 462 QQRSFDEIFKHFNQQYYGVPIAYPNETFVVSDKVKQFKFSGLTDAPIDYKALKVNE 517 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,289,165,125 Number of extensions: 140420824 Number of successful extensions: 343045 Number of sequences better than 1.0e-05: 6823 Number of HSP's gapped: 326369 Number of HSP's successfully gapped: 6927 Length of query: 534 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 393 Effective length of database: 1,732,333,088 Effective search space: 680806903584 Effective search space used: 680806903584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)