BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0005.p (223 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7GMJ4.1 A7GMJ4_BACCN Putative uncharacterized protein 214 5e-54 C2W5G5.1 C2W5G5_BACCE YkgG 213 1e-53 C3B0Z8.1 C3B0Z8_BACMY YkgG 211 3e-53 C3BHM3.1 C3BHM3_9BACI YkgG 211 3e-53 Q4MSC7.1 Q4MSC7_BACCE YkgG family protein 210 8e-53 >A7GMJ4.1 A7GMJ4_BACCN Putative uncharacterized protein Length = 236 Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 110/234 (47%), Positives = 154/234 (65%), Gaps = 13/234 (5%) Query: 2 TASNKDSFLNTIASKLGRERIYD-VQRPDLQA-MAPDSYGDLTADELIEILKEQCFFIHT 59 T N+DSFL+ IA +LGR R + VQRP + + ++ D + +EL+E+ K+QC IHT Sbjct: 4 TIQNRDSFLDNIAKELGRARKTEGVQRPVWKNNVNLETLKDCSEEELLEVFKKQCENIHT 63 Query: 60 QVIESNAEILQKTLDDLIAANGGGAVITSGDARFAEYGL----------EFANASVWEEA 109 VIE+ + L+ + +IA NGGG ++ S D RF +YGL + ++W+ Sbjct: 64 TVIETTKDELKDAIQQMIAENGGGPILVSDDERFEKYGLTSFFREELPSQNVEVNIWDPE 123 Query: 110 AGREQNILRSEAANTAIVFADYALAESGTIVVGSRPDQGRALHFLPAHYIAVIEKKRIML 169 +++NI +E AN I F+DY LAESGTIVV SR QGR+LHFLP Y ++I ++ I+ Sbjct: 124 E-KDENIRFAEKANIGIAFSDYTLAESGTIVVQSRKGQGRSLHFLPTVYFSIIPRETIVP 182 Query: 170 RSTQAAADLNRRIQAGEPLGSSINFISGPSNSADIEMQLVVGVHGPLRAAYVLI 223 R TQA D+N R++ GE + S INFI+GPSNSADIEM LVVGVHGPL+A Y ++ Sbjct: 183 RITQAVRDMNARVEKGEAVASCINFITGPSNSADIEMNLVVGVHGPLKAYYFVV 236 >C2W5G5.1 C2W5G5_BACCE YkgG Length = 236 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 150/234 (64%), Gaps = 13/234 (5%) Query: 2 TASNKDSFLNTIASKLGRERIYD-VQRPDLQA-MAPDSYGDLTADELIEILKEQCFFIHT 59 T N+DSFL IA +LGR R + VQRP ++ + ++ D + +EL+E+ K QC IHT Sbjct: 4 TIQNRDSFLENIAKELGRARKTEGVQRPVWKSNVNVETLKDYSEEELLEVFKRQCTNIHT 63 Query: 60 QVIESNAEILQKTLDDLIAANGGGAVITSGDARFAEYGLE--FAN--------ASVWEEA 109 VIE+ + L + +I NGGG ++ S D RFA YGLE F+ + W Sbjct: 64 TVIETTKDGLSTAMQKVITENGGGPILLSEDDRFATYGLESLFSKELPSQNVEVNTWN-P 122 Query: 110 AGREQNILRSEAANTAIVFADYALAESGTIVVGSRPDQGRALHFLPAHYIAVIEKKRIML 169 +E+NI +E AN I F+DY LAESGTIVV S QGR+LHFLP Y A+I ++ I+ Sbjct: 123 EKKEENIRLAEKANIGIAFSDYTLAESGTIVVQSHKGQGRSLHFLPTVYFAIIPRETIVP 182 Query: 170 RSTQAAADLNRRIQAGEPLGSSINFISGPSNSADIEMQLVVGVHGPLRAAYVLI 223 R TQA D+N R++ GE + S INFI+GPSNSADIEM LVVGVHGPL+A Y ++ Sbjct: 183 RITQAVQDMNTRVENGEAVASCINFITGPSNSADIEMNLVVGVHGPLKAYYFVV 236 >C3B0Z8.1 C3B0Z8_BACMY YkgG Length = 236 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 151/234 (64%), Gaps = 13/234 (5%) Query: 2 TASNKDSFLNTIASKLGRERIYD-VQRPDLQA-MAPDSYGDLTADELIEILKEQCFFIHT 59 T N+DSFL+ IA +LGR R + VQRP + + ++ D + +EL+ + K+QC IHT Sbjct: 4 TIQNRDSFLDNIAKELGRARKTEGVQRPVWKNNVNVETLKDYSEEELLAVFKKQCTNIHT 63 Query: 60 QVIESNAEILQKTLDDLIAANGGGAVITSGDARFAEYGL------EFANASV----WEEA 109 VIE+ + L + +I NGGG ++ SGD RF YGL E N +V W+ Sbjct: 64 TVIETTKDELSAVVRKVITENGGGPILLSGDERFDTYGLNALFSTELPNENVEVNTWD-P 122 Query: 110 AGREQNILRSEAANTAIVFADYALAESGTIVVGSRPDQGRALHFLPAHYIAVIEKKRIML 169 +E+NI +E AN I F+DY LAESGTIVV S QGR+LHFLP Y A+I ++ I+ Sbjct: 123 EKKEENIRLAEKANIGIAFSDYTLAESGTIVVQSHKGQGRSLHFLPTIYFAIIPRETIVP 182 Query: 170 RSTQAAADLNRRIQAGEPLGSSINFISGPSNSADIEMQLVVGVHGPLRAAYVLI 223 R TQA D+N R++ GE + S INFI+GPSNSADIEM LVVGVHGPL+A Y ++ Sbjct: 183 RITQAVHDMNTRVENGEEVASCINFITGPSNSADIEMNLVVGVHGPLKAYYFVV 236 >C3BHM3.1 C3BHM3_9BACI YkgG Length = 236 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 151/234 (64%), Gaps = 13/234 (5%) Query: 2 TASNKDSFLNTIASKLGRERIYD-VQRPDLQA-MAPDSYGDLTADELIEILKEQCFFIHT 59 T N+DSFL+ IA +LGR R + VQRP + + ++ D + +EL+ + K+QC IHT Sbjct: 4 TIQNRDSFLDNIAKELGRARKTEGVQRPVWKNNVNVETLKDYSEEELLAVFKKQCTNIHT 63 Query: 60 QVIESNAEILQKTLDDLIAANGGGAVITSGDARFAEYGL------EFANASV----WEEA 109 VIE+ + L + +I NGGG ++ SGD RF YGL E N +V W+ Sbjct: 64 TVIETTKDELSAVVRKVITENGGGPILLSGDERFDTYGLNALFSIELPNENVEVNTWD-P 122 Query: 110 AGREQNILRSEAANTAIVFADYALAESGTIVVGSRPDQGRALHFLPAHYIAVIEKKRIML 169 +E+NI +E AN I F+DY LAESGTIVV S QGR+LHFLP Y A+I ++ I+ Sbjct: 123 EKKEENIRLAEKANIGIAFSDYTLAESGTIVVQSHKGQGRSLHFLPTIYFAIIPRETIVP 182 Query: 170 RSTQAAADLNRRIQAGEPLGSSINFISGPSNSADIEMQLVVGVHGPLRAAYVLI 223 R TQA D+N R++ GE + S INFI+GPSNSADIEM LVVGVHGPL+A Y ++ Sbjct: 183 RITQAVHDMNTRVENGEEVASCINFITGPSNSADIEMNLVVGVHGPLKAYYFVV 236 >Q4MSC7.1 Q4MSC7_BACCE YkgG family protein Length = 236 Score = 210 bits (534), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 107/231 (46%), Positives = 150/231 (64%), Gaps = 13/231 (5%) Query: 5 NKDSFLNTIASKLGRERIYD-VQRPDLQA-MAPDSYGDLTADELIEILKEQCFFIHTQVI 62 N+DSFL IA +LGR R D V+RP + + ++ D + +EL+E+ K QC IHT V+ Sbjct: 7 NRDSFLENIAKELGRARKTDGVKRPVWKNNVNKETLKDYSQEELLEVFKNQCTNIHTTVV 66 Query: 63 ESNAEILQKTLDDLIAANGGGAVITSGDARFAEYGL----------EFANASVWEEAAGR 112 E+ + L++ + +I NGGG ++ S D RF YGL + +VW+ + Sbjct: 67 ETTNDRLREDIQKVIVENGGGPIMLSADERFDSYGLTSLFKEELPKQNVEVNVWD-PEKK 125 Query: 113 EQNILRSEAANTAIVFADYALAESGTIVVGSRPDQGRALHFLPAHYIAVIEKKRIMLRST 172 E+N+ +E AN I F+DY LAESGTIVV S QGR+LHFLP Y A+I ++ ++ R T Sbjct: 126 EENMRIAERANIGIAFSDYTLAESGTIVVQSHKGQGRSLHFLPTVYFAIIPRETLVPRIT 185 Query: 173 QAAADLNRRIQAGEPLGSSINFISGPSNSADIEMQLVVGVHGPLRAAYVLI 223 QA D+N+R++ GE + S INFI+GPSNSADIEM LVVGVHGPL+A Y ++ Sbjct: 186 QAVEDMNKRVEDGETVASCINFITGPSNSADIEMNLVVGVHGPLKAVYFIV 236 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,197,701,372 Number of extensions: 44217068 Number of successful extensions: 129396 Number of sequences better than 1.0e-05: 420 Number of HSP's gapped: 129014 Number of HSP's successfully gapped: 420 Length of query: 223 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 92 Effective length of database: 1,826,543,238 Effective search space: 168041977896 Effective search space used: 168041977896 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)