BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0003.p (357 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2Q944.1 C2Q944_BACCE Uncharacterized electron transport protein... 457 e-127 C3GY59.1 C3GY59_BACTU Uncharacterized electron transport protein... 455 e-126 Q81GA4.1 Q81GA4_BACCR Iron-sulfur cluster-binding protein 454 e-126 B7IMD4.1 B7IMD4_BACC2 Iron-sulfur cluster-binding protein 454 e-126 B7HH59.1 B7HH59_BACC4 Iron-sulfur cluster-binding protein 454 e-126 >C2Q944.1 C2Q944_BACCE Uncharacterized electron transport protein ykgF Length = 473 Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust. Identities = 212/330 (64%), Positives = 259/330 (78%), Gaps = 1/330 (0%) Query: 1 MSLQTDKREFNERTTDGIGNPFMRNAVSSAQDSLKTRRLSAATALGDWEQWRTLGQQIRQ 60 MS++ +++FN+R DGI + FMR AVSSAQ L T RL AA LG+WE+WR LG+QIRQ Sbjct: 1 MSMKISEKKFNDRVGDGIQDSFMRGAVSSAQTRLYTNRLKAADELGNWEEWRELGEQIRQ 60 Query: 61 HTLKHLDYYLEQLADNIEKKGGHIYFAKTKEEASGYIRDXXXXXXXXXXXXXXXMVTEEI 120 HTL++LDYYL QL+DN+ K+GGH+YFAKTKEEA+ YI+D MVTEEI Sbjct: 61 HTLENLDYYLTQLSDNVAKRGGHVYFAKTKEEAAKYIQDVAKKKQAKKVVKSKSMVTEEI 120 Query: 121 EMNHVLMEAGCELTETDLGEYILQMDDWDPPSHIVAPALHKDRRQIQRVFTEKLGYTGDE 180 MNH L E GCE+ E+DLGEYILQ+D+ DPPSHI+APALHK+R QI+ VF EKLGY + Sbjct: 121 SMNHALEEVGCEVLESDLGEYILQVDN-DPPSHIIAPALHKNRTQIRDVFKEKLGYENSD 179 Query: 181 SPVNLARYARTVLRQKFLEADVGITGCNFAVANLGAINLVTNEGNGDLTAAIPKTHIAVM 240 P + ++ R LR+KF++A++G+TGCNFAVAN G++ LVTNEGN DL +IPKT IAVM Sbjct: 180 DPYEMTKFVRKQLREKFMDAEIGVTGCNFAVANTGSLCLVTNEGNADLVMSIPKTQIAVM 239 Query: 241 GMERIVPTLEEMEVLDNLLCRSAVGQKLTSYISVIGPSASGETDGPEDFHLVVVDNGRSG 300 GMER+VPT+EE++VL LLCRSAVGQKLTSY++V GP E DGPE+FHLVVVDNGRS Sbjct: 240 GMERMVPTMEELDVLVGLLCRSAVGQKLTSYVTVAGPIQEEEVDGPEEFHLVVVDNGRSQ 299 Query: 301 ILGSEFNEALQCIRCGACLNVCPVYRHIGG 330 ILGSEF LQCIRC AC+NVCPVYRH+GG Sbjct: 300 ILGSEFRSVLQCIRCAACVNVCPVYRHVGG 329 >C3GY59.1 C3GY59_BACTU Uncharacterized electron transport protein ykgF Length = 473 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/330 (63%), Positives = 260/330 (78%), Gaps = 1/330 (0%) Query: 1 MSLQTDKREFNERTTDGIGNPFMRNAVSSAQDSLKTRRLSAATALGDWEQWRTLGQQIRQ 60 MS++ +++FN+R DGI + FMR AVSSAQ L T RL AA LG+WE+WR LG+QIRQ Sbjct: 1 MSMKISEKKFNDRVGDGIQDSFMRGAVSSAQTRLYTNRLKAADELGNWEEWRELGEQIRQ 60 Query: 61 HTLKHLDYYLEQLADNIEKKGGHIYFAKTKEEASGYIRDXXXXXXXXXXXXXXXMVTEEI 120 HTL++LDYYL QL++N+ K+GGH+YFAKTKEEA+ YI+D MVTEEI Sbjct: 61 HTLENLDYYLMQLSENVSKRGGHVYFAKTKEEAAKYIQDVAKKKQAKKVVKSKSMVTEEI 120 Query: 121 EMNHVLMEAGCELTETDLGEYILQMDDWDPPSHIVAPALHKDRRQIQRVFTEKLGYTGDE 180 MNH L E GCE+ E+DLGEYILQ+D+ DPPSHI+APALHK+R QI+ VF EKLGY + Sbjct: 121 SMNHALEEIGCEVLESDLGEYILQVDN-DPPSHIIAPALHKNRTQIRDVFKEKLGYENSD 179 Query: 181 SPVNLARYARTVLRQKFLEADVGITGCNFAVANLGAINLVTNEGNGDLTAAIPKTHIAVM 240 P + ++ R LR+KF++A++G+TGCNFAVAN G++ LVTNEGN DL +IPKT IAVM Sbjct: 180 DPYEMTKFVRKQLREKFMDAEIGVTGCNFAVANTGSLCLVTNEGNADLVMSIPKTQIAVM 239 Query: 241 GMERIVPTLEEMEVLDNLLCRSAVGQKLTSYISVIGPSASGETDGPEDFHLVVVDNGRSG 300 GMER+VPT+EE++VL LLCRSAVGQKLTSY++V GP E DGPE+FHLVVVDNGRS Sbjct: 240 GMERMVPTMEELDVLVGLLCRSAVGQKLTSYVTVAGPIQEEEVDGPEEFHLVVVDNGRSQ 299 Query: 301 ILGSEFNEALQCIRCGACLNVCPVYRHIGG 330 ILGSEF + LQCIRC AC+NVCPVYRH+GG Sbjct: 300 ILGSEFRQVLQCIRCAACVNVCPVYRHVGG 329 >Q81GA4.1 Q81GA4_BACCR Iron-sulfur cluster-binding protein Length = 473 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/330 (63%), Positives = 259/330 (78%), Gaps = 1/330 (0%) Query: 1 MSLQTDKREFNERTTDGIGNPFMRNAVSSAQDSLKTRRLSAATALGDWEQWRTLGQQIRQ 60 MS++ +++FN+R DGI + FMR AVSSAQ L T RL AA LG+WE+WR LG+QIRQ Sbjct: 1 MSMKISEKKFNDRVGDGIQDSFMRGAVSSAQTRLYTNRLKAADELGNWEEWRELGEQIRQ 60 Query: 61 HTLKHLDYYLEQLADNIEKKGGHIYFAKTKEEASGYIRDXXXXXXXXXXXXXXXMVTEEI 120 HTL++LDYYL QL++N+ K+GGH+YFAKTKEEA+ YI+D MVTEEI Sbjct: 61 HTLENLDYYLMQLSENVSKRGGHVYFAKTKEEAAKYIQDVAKKKQAKKVVKSKSMVTEEI 120 Query: 121 EMNHVLMEAGCELTETDLGEYILQMDDWDPPSHIVAPALHKDRRQIQRVFTEKLGYTGDE 180 MNH L E GCE+ E+DLGEYILQ+D+ DPPSHI+APALHK+R QI+ VF EKLGY + Sbjct: 121 SMNHALEEIGCEVLESDLGEYILQVDN-DPPSHIIAPALHKNRTQIRDVFKEKLGYENSD 179 Query: 181 SPVNLARYARTVLRQKFLEADVGITGCNFAVANLGAINLVTNEGNGDLTAAIPKTHIAVM 240 P + ++ R LR+KF++A++G+TGCNFAVAN G++ LVTNEGN DL +IPKT IAVM Sbjct: 180 DPYEMTKFVRKQLREKFMDAEIGVTGCNFAVANTGSLCLVTNEGNADLVMSIPKTQIAVM 239 Query: 241 GMERIVPTLEEMEVLDNLLCRSAVGQKLTSYISVIGPSASGETDGPEDFHLVVVDNGRSG 300 GMER+VPT+EE++VL LLCRSAVGQKLTSY++V GP E DGPE+FHLVVVDNGRS Sbjct: 240 GMERMVPTMEELDVLVGLLCRSAVGQKLTSYVTVAGPIQEEEVDGPEEFHLVVVDNGRSQ 299 Query: 301 ILGSEFNEALQCIRCGACLNVCPVYRHIGG 330 ILGSEF LQCIRC AC+NVCPVYRH+GG Sbjct: 300 ILGSEFRSVLQCIRCAACVNVCPVYRHVGG 329 >B7IMD4.1 B7IMD4_BACC2 Iron-sulfur cluster-binding protein Length = 473 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/330 (63%), Positives = 259/330 (78%), Gaps = 1/330 (0%) Query: 1 MSLQTDKREFNERTTDGIGNPFMRNAVSSAQDSLKTRRLSAATALGDWEQWRTLGQQIRQ 60 MS++ +++FN+R DGI + FMR AVSSAQ L T RL AA LG+WE+WR LG+QIRQ Sbjct: 1 MSMKISEKKFNDRVGDGIQDSFMRGAVSSAQTRLYTNRLKAADELGNWEEWRELGEQIRQ 60 Query: 61 HTLKHLDYYLEQLADNIEKKGGHIYFAKTKEEASGYIRDXXXXXXXXXXXXXXXMVTEEI 120 HTL++LDYYL QL++N+ K+GGH+YFAKTKEEA+ YI+D MVTEEI Sbjct: 61 HTLENLDYYLMQLSENVSKRGGHVYFAKTKEEAAKYIQDVAKKKQAKKVVKSKSMVTEEI 120 Query: 121 EMNHVLMEAGCELTETDLGEYILQMDDWDPPSHIVAPALHKDRRQIQRVFTEKLGYTGDE 180 MNH L E GCE+ E+DLGEYILQ+D+ DPPSHI+APALHK+R QI+ VF EKLGY + Sbjct: 121 SMNHALEEIGCEVLESDLGEYILQVDN-DPPSHIIAPALHKNRTQIRDVFKEKLGYENSD 179 Query: 181 SPVNLARYARTVLRQKFLEADVGITGCNFAVANLGAINLVTNEGNGDLTAAIPKTHIAVM 240 P + ++ R LR+KF++A++G+TGCNFAVAN G++ LVTNEGN DL +IPKT IAVM Sbjct: 180 DPYEMTKFVRKQLREKFMDAEIGVTGCNFAVANTGSLCLVTNEGNADLVMSIPKTQIAVM 239 Query: 241 GMERIVPTLEEMEVLDNLLCRSAVGQKLTSYISVIGPSASGETDGPEDFHLVVVDNGRSG 300 GMER+VPT+EE++VL LLCRSAVGQKLTSY++V GP E DGPE+FHLVVVDNGRS Sbjct: 240 GMERMVPTMEELDVLVGLLCRSAVGQKLTSYVTVAGPIQEEEVDGPEEFHLVVVDNGRSQ 299 Query: 301 ILGSEFNEALQCIRCGACLNVCPVYRHIGG 330 ILGSEF LQCIRC AC+NVCPVYRH+GG Sbjct: 300 ILGSEFRSVLQCIRCAACVNVCPVYRHVGG 329 >B7HH59.1 B7HH59_BACC4 Iron-sulfur cluster-binding protein Length = 473 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/330 (63%), Positives = 259/330 (78%), Gaps = 1/330 (0%) Query: 1 MSLQTDKREFNERTTDGIGNPFMRNAVSSAQDSLKTRRLSAATALGDWEQWRTLGQQIRQ 60 MS++ +++FN+R DGI + FMR AVSSAQ L T RL AA LG+WE+WR LG+QIRQ Sbjct: 1 MSMKISEKKFNDRVGDGIQDSFMRGAVSSAQTRLYTNRLKAADELGNWEEWRELGEQIRQ 60 Query: 61 HTLKHLDYYLEQLADNIEKKGGHIYFAKTKEEASGYIRDXXXXXXXXXXXXXXXMVTEEI 120 HTL++LDYYL QL++N+ K+GGH+YFAKTKEEA+ YI+D MVTEEI Sbjct: 61 HTLENLDYYLMQLSENVSKRGGHVYFAKTKEEAAKYIQDVAKKKQAKKVVKSKSMVTEEI 120 Query: 121 EMNHVLMEAGCELTETDLGEYILQMDDWDPPSHIVAPALHKDRRQIQRVFTEKLGYTGDE 180 MNH L E GCE+ E+DLGEYILQ+D+ DPPSHI+APALHK+R QI+ VF EKLGY + Sbjct: 121 SMNHALEEIGCEVLESDLGEYILQVDN-DPPSHIIAPALHKNRTQIRDVFKEKLGYENSD 179 Query: 181 SPVNLARYARTVLRQKFLEADVGITGCNFAVANLGAINLVTNEGNGDLTAAIPKTHIAVM 240 P + ++ R LR+KF++A++G+TGCNFAVAN G++ LVTNEGN DL +IPKT IAVM Sbjct: 180 DPYEMTKFVRKQLREKFMDAEIGVTGCNFAVANTGSLCLVTNEGNADLVMSIPKTQIAVM 239 Query: 241 GMERIVPTLEEMEVLDNLLCRSAVGQKLTSYISVIGPSASGETDGPEDFHLVVVDNGRSG 300 GMER+VPT+EE++VL LLCRSAVGQKLTSY++V GP E DGPE+FHLVVVDNGRS Sbjct: 240 GMERMVPTMEELDVLVGLLCRSAVGQKLTSYVTVAGPIQEEEVDGPEEFHLVVVDNGRSQ 299 Query: 301 ILGSEFNEALQCIRCGACLNVCPVYRHIGG 330 ILGSEF LQCIRC AC+NVCPVYRH+GG Sbjct: 300 ILGSEFRSVLQCIRCAACVNVCPVYRHVGG 329 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,041,348,370 Number of extensions: 80164237 Number of successful extensions: 212226 Number of sequences better than 1.0e-05: 675 Number of HSP's gapped: 210192 Number of HSP's successfully gapped: 675 Length of query: 357 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 220 Effective length of database: 1,770,017,148 Effective search space: 389403772560 Effective search space used: 389403772560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)