BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0002.p (262 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2BYB6.1 C2BYB6_LISGR (S)-2-hydroxy-acid oxidase 353 1e-95 C1PCB2.1 C1PCB2_BACCO Putative uncharacterized protein 340 5e-92 A4IK96.1 A4IK96_GEOTN (S)-2-hydroxy-acid oxidase, iron-sulfur chain 340 9e-92 B4BQL6.1 B4BQL6_9BACI Putative uncharacterized protein 340 9e-92 A3I782.1 A3I782_9BACI YvfV 338 4e-91 >C2BYB6.1 C2BYB6_LISGR (S)-2-hydroxy-acid oxidase Length = 250 Score = 353 bits (905), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 164/236 (69%), Positives = 196/236 (83%) Query: 10 MKVSIFSTCVVDLMAPNVGIAMVQVLERLGCEIDFPASQVCCGQPTYNSGYLEDSKLAMK 69 MKVSIFSTC+VD+M PNVGIAMV+ LERLGCE DFP SQVCCGQPTYNSGY+ED++ + Sbjct: 6 MKVSIFSTCLVDMMFPNVGIAMVECLERLGCETDFPESQVCCGQPTYNSGYMEDTRKTLI 65 Query: 70 NMMRAFEHSDYVVGPSGSCIAMFHEYPKIFKGDPQWELKAVALKEKAYEFTQFIVRVLGI 129 N + AF+ S+YVVGPSGSC+ M EY +IFK DP++ A L EK YEF+QFI RVLG Sbjct: 66 NQLEAFKDSEYVVGPSGSCVGMMREYAEIFKDDPEYAEAAKELSEKTYEFSQFIYRVLGK 125 Query: 130 TDVGASLEGTATYHRSCHMTRLLGERETPFQLLEQVQGLQMEPLKNSDNCCGFGGTFSVK 189 T+VGA L G ATYHRSCHMTR+LGERE PF+LL++V+GL+M L + +NCCGFGGTFSVK Sbjct: 126 TNVGAKLAGKATYHRSCHMTRILGEREAPFELLKEVEGLEMIALPHVENCCGFGGTFSVK 185 Query: 190 MPDISEQMVNEKCGCITETGADILISADMGCLLNIGGRLSRKGEPVKIMHIAEVLN 245 MP+ISEQMV+EK I ET A+ILISADMGCL+NIGG+ +R G+ +KIMHIAEVLN Sbjct: 186 MPEISEQMVSEKVADIVETDAEILISADMGCLMNIGGKFNRLGKEIKIMHIAEVLN 241 >C1PCB2.1 C1PCB2_BACCO Putative uncharacterized protein Length = 239 Score = 340 bits (873), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 159/239 (66%), Positives = 192/239 (80%) Query: 10 MKVSIFSTCVVDLMAPNVGIAMVQVLERLGCEIDFPASQVCCGQPTYNSGYLEDSKLAMK 69 M+VS+F TC+VD+ +VG AMV+VLER GCE+DFP Q+CCGQP+YNSGYLED+K AMK Sbjct: 1 MRVSLFITCLVDMFKADVGKAMVEVLERQGCEVDFPKGQICCGQPSYNSGYLEDTKPAMK 60 Query: 70 NMMRAFEHSDYVVGPSGSCIAMFHEYPKIFKGDPQWELKAVALKEKAYEFTQFIVRVLGI 129 MM+AFE++DYVV PSGSC MF EYP+IF GDP WE KA AL K YEFTQF+V VL + Sbjct: 61 QMMKAFENADYVVSPSGSCAYMFKEYPEIFAGDPVWEPKAKALAAKTYEFTQFLVDVLKV 120 Query: 130 TDVGASLEGTATYHRSCHMTRLLGERETPFQLLEQVQGLQMEPLKNSDNCCGFGGTFSVK 189 DVGASL ATYH SCHMTRLLG ++ P +LL+ V GL+ PL N+ +CCGFGGTFSVK Sbjct: 121 EDVGASLHVKATYHPSCHMTRLLGVKDAPMKLLKHVDGLEFVPLPNALSCCGFGGTFSVK 180 Query: 190 MPDISEQMVNEKCGCITETGADILISADMGCLLNIGGRLSRKGEPVKIMHIAEVLNHHN 248 M +ISEQMV+EK + ETGAD+LI D GCL+NIGGR++RKG+P+KIMHIAEVLN + Sbjct: 181 MSEISEQMVDEKVEHVEETGADVLIGGDCGCLMNIGGRMTRKGKPMKIMHIAEVLNSRD 239 >A4IK96.1 A4IK96_GEOTN (S)-2-hydroxy-acid oxidase, iron-sulfur chain Length = 239 Score = 340 bits (871), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 159/239 (66%), Positives = 187/239 (78%) Query: 10 MKVSIFSTCVVDLMAPNVGIAMVQVLERLGCEIDFPASQVCCGQPTYNSGYLEDSKLAMK 69 MKVS+F TC++DL NVG A V++LERLGCEIDFP +Q CCGQP YNSGY++D+K AMK Sbjct: 1 MKVSLFVTCLIDLFYTNVGKATVELLERLGCEIDFPEAQTCCGQPAYNSGYIKDAKEAMK 60 Query: 70 NMMRAFEHSDYVVGPSGSCIAMFHEYPKIFKGDPQWELKAVALKEKAYEFTQFIVRVLGI 129 MMRAF +DYVV PSGSC AM EYP IF+GDP+WE +A L K YE TQF+V VL + Sbjct: 61 QMMRAFADADYVVTPSGSCAAMLKEYPHIFRGDPEWEEEAKRLAAKTYELTQFLVNVLRV 120 Query: 130 TDVGASLEGTATYHRSCHMTRLLGERETPFQLLEQVQGLQMEPLKNSDNCCGFGGTFSVK 189 DVGASL G ATYH SCHMTRLLGE+E P +LLE V+GL++ PL N+ CCGFGGTFSVK Sbjct: 121 EDVGASLPGRATYHTSCHMTRLLGEKEVPLRLLEHVKGLELVPLPNAHQCCGFGGTFSVK 180 Query: 190 MPDISEQMVNEKCGCITETGADILISADMGCLLNIGGRLSRKGEPVKIMHIAEVLNHHN 248 M ISEQMV+EK I E AD LI AD GCL+NIGGR+ R G+P+++MHIAEVLNH N Sbjct: 181 MGPISEQMVDEKIEHIEEVKADYLIGADCGCLMNIGGRIGRVGKPIRVMHIAEVLNHRN 239 >B4BQL6.1 B4BQL6_9BACI Putative uncharacterized protein Length = 239 Score = 340 bits (871), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 159/239 (66%), Positives = 187/239 (78%) Query: 10 MKVSIFSTCVVDLMAPNVGIAMVQVLERLGCEIDFPASQVCCGQPTYNSGYLEDSKLAMK 69 MKVS+F TC++DL NVG A V++LERLGCEIDFP +Q CCGQP YNSGY++D+K AMK Sbjct: 1 MKVSLFVTCLIDLFYTNVGKATVELLERLGCEIDFPEAQTCCGQPAYNSGYIKDAKEAMK 60 Query: 70 NMMRAFEHSDYVVGPSGSCIAMFHEYPKIFKGDPQWELKAVALKEKAYEFTQFIVRVLGI 129 MMRAF +DYVV PSGSC AM EYP IF+GDP+WE +A L K YE TQF+V VL + Sbjct: 61 QMMRAFADADYVVTPSGSCAAMLKEYPHIFRGDPEWEEEAKRLAAKTYELTQFLVNVLRV 120 Query: 130 TDVGASLEGTATYHRSCHMTRLLGERETPFQLLEQVQGLQMEPLKNSDNCCGFGGTFSVK 189 DVGASL G ATYH SCHMTRLLGE+E P +LLE V+GL++ PL N+ CCGFGGTFSVK Sbjct: 121 EDVGASLPGRATYHTSCHMTRLLGEKEAPLRLLEHVKGLELVPLPNAHQCCGFGGTFSVK 180 Query: 190 MPDISEQMVNEKCGCITETGADILISADMGCLLNIGGRLSRKGEPVKIMHIAEVLNHHN 248 M ISEQMV+EK I E AD LI AD GCL+NIGGR+ R G+P+++MHIAEVLNH N Sbjct: 181 MGPISEQMVDEKIEHIEEVKADYLIGADCGCLMNIGGRIGRVGKPIRVMHIAEVLNHRN 239 >A3I782.1 A3I782_9BACI YvfV Length = 238 Score = 338 bits (866), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 158/236 (66%), Positives = 188/236 (79%) Query: 10 MKVSIFSTCVVDLMAPNVGIAMVQVLERLGCEIDFPASQVCCGQPTYNSGYLEDSKLAMK 69 MKV++F+TC+VDL +VG A+V+VLERLGCEIDFP Q+CCGQP YNSGY+++SK AMK Sbjct: 1 MKVTLFATCLVDLFQGDVGKAVVEVLERLGCEIDFPEEQICCGQPAYNSGYVKESKNAMK 60 Query: 70 NMMRAFEHSDYVVGPSGSCIAMFHEYPKIFKGDPQWELKAVALKEKAYEFTQFIVRVLGI 129 M+ AFEH++YV+ PSGSC MF EYP++FKGDPQWE KA AL K YEFT+FIV VL I Sbjct: 61 RMIAAFEHAEYVISPSGSCAYMFKEYPEVFKGDPQWESKAKALAAKTYEFTEFIVNVLMI 120 Query: 130 TDVGASLEGTATYHRSCHMTRLLGERETPFQLLEQVQGLQMEPLKNSDNCCGFGGTFSVK 189 DVGA LEG ATYH SCHMTRLLG E P +LL+ V GLQ L D CCGFGGTFSVK Sbjct: 121 EDVGAHLEGKATYHTSCHMTRLLGVTEAPLKLLQNVDGLQYVELPGKDRCCGFGGTFSVK 180 Query: 190 MPDISEQMVNEKCGCITETGADILISADMGCLLNIGGRLSRKGEPVKIMHIAEVLN 245 M +IS +MV+EK + ETGAD LI AD GCL+NIGGR+ R+G+P+K+MHIAEVLN Sbjct: 181 MGNISSEMVHEKVHHVEETGADYLIGADAGCLINIGGRIHRQGKPIKVMHIAEVLN 236 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,548,006,671 Number of extensions: 60217030 Number of successful extensions: 160544 Number of sequences better than 1.0e-05: 1546 Number of HSP's gapped: 158861 Number of HSP's successfully gapped: 1546 Length of query: 262 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 129 Effective length of database: 1,807,701,208 Effective search space: 233193455832 Effective search space used: 233193455832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)