BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0203.0004.p (460 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DFQ9.1 B1DFQ9_9BACL PUA domain containing protein 664 0.0 B3KG20.1 B3KG20_9BACI SAM-dependent methyltransferase 661 0.0 C0ZB58.1 C0ZB58_BREBN Putative uncharacterized protein 555 e-156 C3J4Y9.1 C3J4Y9_9BACI Putative uncharacterized protein 456 e-126 B7YEM9.1 B7YEM9_9BACI Putative uncharacterized protein 456 e-126 >B1DFQ9.1 B1DFQ9_9BACL PUA domain containing protein Length = 455 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/462 (69%), Positives = 378/462 (81%), Gaps = 16/462 (3%) Query: 1 LERSRKKRLEQGHPWVYASEVASVDGDPQPGGLVDVLNHQGRYLGTGYYNPASQIRVRIL 60 L++ R+KRLE GHPW+YA+E+ ++G+ +PG LVD++ G+YL TGYYN SQI VR++ Sbjct: 8 LQKGRRKRLEAGHPWIYANEIEKLEGEAEPGALVDIVGSNGKYLATGYYNSESQITVRVV 67 Query: 61 ARNPLAAMDTAFFAGRLASCLRHRQRFLPGADAYRLVYGEADFLPGLIIDRFGEVLVVQL 120 + PL MD FF + C HR RF+ D RLVYGEADFLPGL++DRF +VLVVQ+ Sbjct: 68 SYQPLEEMDADFFREKFRLCEAHRSRFVQDRDC-RLVYGEADFLPGLVVDRFADVLVVQI 126 Query: 121 LTLGMDKCRDQIVQALVEVVAPRGIYERSDVSVRELEGLEQRTGVLYGECPRHITVSENG 180 LTLGMD R+ +V ALV+V P+GIYERSDV VR+LEGLE RTGVLYGECPR + + ENG Sbjct: 127 LTLGMDIRREALVAALVDVFQPKGIYERSDVGVRQLEGLELRTGVLYGECPRILEIEENG 186 Query: 181 LKVIVDIEEGQKTGYFFDQRENRASIAPLIQGWGGRSGITLQEVAAEDGTVQT--LPVNK 238 LK+ VDI EGQKTGYF+DQRENRASI PL++GWG RSGI L+ A+ T T +PVN Sbjct: 187 LKLEVDIVEGQKTGYFYDQRENRASIEPLMKGWGARSGIRLENRPADTDTEVTRLVPVNP 246 Query: 239 SGKPVTFPYWDGATVLECFAHTGSFTLHACKYGAKKVTCLDVSAHAIESAKANVELNGFS 298 +GK VTFPYWDGATVLECFAHTGSFTLHACKYGAKKVTCLDVS HAI++A+ NVE NGF+ Sbjct: 247 NGKEVTFPYWDGATVLECFAHTGSFTLHACKYGAKKVTCLDVSEHAIDTARRNVERNGFA 306 Query: 299 DRVEFVVDDAFAFLRNQVKGLEERSERATGKTDAKPGAKPASKTDTAKPMTAGGGRTWDV 358 DRVEFVV DAF +LR QVKG+EER+ER+ + GA DT+KP++ GGGRTWDV Sbjct: 307 DRVEFVVADAFDYLRTQVKGVEERAERS------RAGA------DTSKPLS-GGGRTWDV 353 Query: 359 VILDPPAFAKTKSAVAGACRGYKDINLHGMKLVNEGGYLVTASCSYHMQPQLFLDTIAEA 418 VILDPPAFAKTKSAVAGACRGYKDINLHG+KLVNEGGYLVTASCSYHM+P LFL+TI EA Sbjct: 354 VILDPPAFAKTKSAVAGACRGYKDINLHGLKLVNEGGYLVTASCSYHMRPDLFLETIQEA 413 Query: 419 AKDAGKVLRLIEWRAAGKDHPQILGVDEGHYLKFAIFEVRSK 460 A DAGK+LRL+EWRAAGKDHPQ+LGV EGHYLKFA+FEVRSK Sbjct: 414 ASDAGKLLRLVEWRAAGKDHPQLLGVSEGHYLKFAVFEVRSK 455 >B3KG20.1 B3KG20_9BACI SAM-dependent methyltransferase Length = 385 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/393 (79%), Positives = 343/393 (87%), Gaps = 11/393 (2%) Query: 68 MDTAFFAGRLASCLRHRQRFLPGADAYRLVYGEADFLPGLIIDRFGEVLVVQLLTLGMDK 127 MD AFFA R CL+HR+RF+ +AYRLVYGEADFLPGLI+DRF +VLVVQLLTLGMD+ Sbjct: 1 MDKAFFAARFEECLKHRERFIGDENAYRLVYGEADFLPGLIVDRFADVLVVQLLTLGMDR 60 Query: 128 CRDQIVQALVEVVAPRGIYERSDVSVRELEGLEQRTGVLYGECPRHITVSENGLKVIVDI 187 CR IV+ALVEVV P+GIYERSDVS+RELEGLEQR G LYGECPRH+ V+ENGLK+ VDI Sbjct: 61 CRADIVEALVEVVQPKGIYERSDVSIRELEGLEQRKGTLYGECPRHVVVTENGLKIKVDI 120 Query: 188 EEGQKTGYFFDQRENRASIAPLIQGWGGRSGITLQEVAAEDGTVQTLPVNKSGKPVTFPY 247 EEGQKTGYFFDQRENRASI PL+ GWG RSGITLQ V DG +TLPVNKSGK VTFPY Sbjct: 121 EEGQKTGYFFDQRENRASIKPLMTGWGSRSGITLQAV-ERDGETKTLPVNKSGKEVTFPY 179 Query: 248 WDGATVLECFAHTGSFTLHACKYGAKKVTCLDVSAHAIESAKANVELNGFSDRVEFVVDD 307 WDGATVLECF+HTGSFTLHACKYGAKKVTCLD+S HAIESAK NVELNGF DRVEFVVDD Sbjct: 180 WDGATVLECFSHTGSFTLHACKYGAKKVTCLDISEHAIESAKENVELNGFQDRVEFVVDD 239 Query: 308 AFAFLRNQVKGLEERSERATGKTDAKPGAKPASKTDTAKPMTAGGGRTWDVVILDPPAFA 367 AF +LR+QVKGLEER RA G K DT+KP+TAGGGR+WDVVILDPPAFA Sbjct: 240 AFQYLRSQVKGLEERELRAQGD----------QKVDTSKPLTAGGGRSWDVVILDPPAFA 289 Query: 368 KTKSAVAGACRGYKDINLHGMKLVNEGGYLVTASCSYHMQPQLFLDTIAEAAKDAGKVLR 427 KT+SAV GACRGYKDINLHGMKLVNEGGYLVTASCSYHM+P LFL+TI +AAKDAGK+LR Sbjct: 290 KTRSAVKGACRGYKDINLHGMKLVNEGGYLVTASCSYHMRPDLFLETIQDAAKDAGKILR 349 Query: 428 LIEWRAAGKDHPQILGVDEGHYLKFAIFEVRSK 460 L+EWRAAGKDHPQILGVDEGHYLKFA+FEVR K Sbjct: 350 LVEWRAAGKDHPQILGVDEGHYLKFAVFEVRGK 382 >C0ZB58.1 C0ZB58_BREBN Putative uncharacterized protein Length = 431 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 272/460 (59%), Positives = 329/460 (71%), Gaps = 35/460 (7%) Query: 1 LERSRKKRLEQGHPWVYASEVASVDGDPQPGGLVDVLNHQGRYLGTGYYNPASQIRVRIL 60 L + RKKRLE GHPW++ SEV + GD +PG +V+V NH+G +L GY NPASQ+ VRIL Sbjct: 6 LNQHRKKRLEVGHPWIFKSEVLEIQGDAEPGEIVEVTNHKGHFLAKGYINPASQMIVRIL 65 Query: 61 ARNPLAAMDTAFFAGRLASCLRHRQRFLPGADAYRLVYGEADFLPGLIIDRFGEVLVVQL 120 + + +D FF ++ R RF+ A R++YGEADFLPGLI+DR+ + LVVQ+ Sbjct: 66 SYDQKEEIDYDFFLRKIKEAAEFRTRFVDNPRACRVIYGEADFLPGLIVDRYEDTLVVQV 125 Query: 121 LTLGMDKCRDQIVQALVEVVAPRGIYERSDVSVRELEGLEQRTGVLYGECPRHITVSENG 180 L+LGM+K D I ALVEV AP GIY R+DV VRELEGL Q VLYGECPR + + ENG Sbjct: 126 LSLGMEKRIDWIRDALVEVFAPTGIYLRNDVPVRELEGLTQGKEVLYGECPREVLIEENG 185 Query: 181 LKVIVDIEEGQKTGYFFDQRENRASIAPLIQGWGGRSGITLQEVAAEDGTVQTLPVNKSG 240 LK VDI EGQKTG+F+DQRENRASIAPL++GWG + GI+L + DG + +PV+K G Sbjct: 186 LKYYVDIVEGQKTGFFYDQRENRASIAPLMKGWGEKHGISLTSMEV-DGETKQVPVDKRG 244 Query: 241 KPVTFPYWDGATVLECFAHTGSFTLHACKYGAKKVTCLDVSAHAIESAKANVELNGFSDR 300 K V P+WDGA VLECF HTGSFTL+ACK+GAKKVT LD+S HAIE+AK N+ LNGF R Sbjct: 245 KAVKNPFWDGAEVLECFTHTGSFTLNACKHGAKKVTALDISEHAIETAKRNITLNGFLHR 304 Query: 301 VEFVVDDAFAFLRNQVKGLEERSERATGKTDAKPGAKPASKTDTAKPMTAGGGRTWDVVI 360 V+FVV +AF +LR V+ G++WDVVI Sbjct: 305 VDFVVANAFDYLRENVE----------------------------------AGKSWDVVI 330 Query: 361 LDPPAFAKTKSAVAGACRGYKDINLHGMKLVNEGGYLVTASCSYHMQPQLFLDTIAEAAK 420 LDPPAFAK++ AV GACRGYKDINL+GMKLV +GG+LVTASCSYHM P+LFL TI EAA Sbjct: 331 LDPPAFAKSRGAVKGACRGYKDINLNGMKLVRQGGFLVTASCSYHMSPELFLQTIQEAAV 390 Query: 421 DAGKVLRLIEWRAAGKDHPQILGVDEGHYLKFAIFEVRSK 460 DA K+LRLIEWR AGKDHPQI G DE HYLKFAIFEVR + Sbjct: 391 DAKKILRLIEWRGAGKDHPQISGADEAHYLKFAIFEVRDR 430 >C3J4Y9.1 C3J4Y9_9BACI Putative uncharacterized protein Length = 394 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 233/460 (50%), Positives = 296/460 (64%), Gaps = 72/460 (15%) Query: 1 LERSRKKRLEQGHPWVYASEVASVDGDPQPGGLVDVLNHQGRYLGTGYYNPASQIRVRIL 60 L+R RKKRLEQGHPW++ SEV ++GD PG VDV NHQG +L GY NPASQI VR+L Sbjct: 6 LKRERKKRLEQGHPWIFQSEVDRIEGDATPGDFVDVYNHQGYWLAKGYINPASQIIVRVL 65 Query: 61 ARNPLAAMDTAFFAGRLASCLRHRQRFLPGADAYRLVYGEADFLPGLIIDRFGEVLVVQL 120 +NP +D FF R+ +R+R +PG + R VYGEADFLPGLI+D++ +VLVVQ+ Sbjct: 66 TQNPNDELDERFFIDRIRQAWAYRERMIPGVRSCRAVYGEADFLPGLIVDKYEDVLVVQI 125 Query: 121 LTLGMDKCRDQIVQALVEVVAPRGIYERSDVSVRELEGLEQRTGVLYGECPRHITVSENG 180 L LGM++ +D I++ L++V APR IY R+DVSVRELEGL+Q G YG+ I + ENG Sbjct: 126 LALGMERRKDWILRGLLDVFAPRAIYLRNDVSVRELEGLKQEKGFWYGKAETEIEIEENG 185 Query: 181 LKVIVDIEEGQKTGYFFDQRENRASIAPLIQGWGGRSGITLQEVAAEDGTVQTLPVNKSG 240 +K IVDIE GQKTG+FFDQR+NRA++ PLI Sbjct: 186 VKYIVDIENGQKTGFFFDQRQNRAALRPLI------------------------------ 215 Query: 241 KPVTFPYWDGATVLECFAHTGSFTLHACKYGAKKVTCLDVSAHAIESAKANVELNGFSDR 300 P T TVL+CF HTGSF L+AC YGAK T +D+S HAIE+AK N LNGF++ Sbjct: 216 GPET-------TVLDCFTHTGSFMLNACLYGAKHATAVDISEHAIETAKRNAALNGFTN- 267 Query: 301 VEFVVDDAFAFLRNQVKGLEERSERATGKTDAKPGAKPASKTDTAKPMTAGGGRTWDVVI 360 VEFVV +AF +LR V+ G+ WDVVI Sbjct: 268 VEFVVANAFDYLRESVR----------------------------------AGKQWDVVI 293 Query: 361 LDPPAFAKTKSAVAGACRGYKDINLHGMKLVNEGGYLVTASCSYHMQPQLFLDTIAEAAK 420 +DPPAFAK+ AV A RGYKDINL+G+KLV +GG+ VT+SCSYH++P LF + IA+AA Sbjct: 294 IDPPAFAKSAHAVPKALRGYKDINLNGLKLVKDGGFFVTSSCSYHVRPHLFQEMIADAAF 353 Query: 421 DAGKVLRLIEWRAAGKDHPQILGVDEGHYLKFAIFEVRSK 460 DA KVLR + W AG DHP++L +EG YLKFAI+EV S+ Sbjct: 354 DAKKVLRQVYWNGAGYDHPKLLAAEEGDYLKFAIYEVHSR 393 >B7YEM9.1 B7YEM9_9BACI Putative uncharacterized protein Length = 394 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 233/460 (50%), Positives = 296/460 (64%), Gaps = 72/460 (15%) Query: 1 LERSRKKRLEQGHPWVYASEVASVDGDPQPGGLVDVLNHQGRYLGTGYYNPASQIRVRIL 60 L+R RKKRLEQGHPW++ SEV ++GD PG VDV NHQG +L GY NPASQI VR+L Sbjct: 6 LKRERKKRLEQGHPWIFQSEVDRIEGDATPGDFVDVYNHQGYWLAKGYINPASQIIVRVL 65 Query: 61 ARNPLAAMDTAFFAGRLASCLRHRQRFLPGADAYRLVYGEADFLPGLIIDRFGEVLVVQL 120 +NP +D FF R+ +R+R +PG + R VYGEADFLPGLI+D++ +VLVVQ+ Sbjct: 66 TQNPNDELDERFFIDRIRQAWAYRERMIPGVRSCRAVYGEADFLPGLIVDKYEDVLVVQI 125 Query: 121 LTLGMDKCRDQIVQALVEVVAPRGIYERSDVSVRELEGLEQRTGVLYGECPRHITVSENG 180 L LGM++ +D I++ L++V APR IY R+DVSVRELEGL+Q G YG+ I + ENG Sbjct: 126 LALGMERRKDWILRGLLDVFAPRAIYLRNDVSVRELEGLKQEKGFWYGKAETEIEIEENG 185 Query: 181 LKVIVDIEEGQKTGYFFDQRENRASIAPLIQGWGGRSGITLQEVAAEDGTVQTLPVNKSG 240 +K IVDIE GQKTG+FFDQR+NRA++ PLI Sbjct: 186 VKYIVDIENGQKTGFFFDQRQNRAALRPLI------------------------------ 215 Query: 241 KPVTFPYWDGATVLECFAHTGSFTLHACKYGAKKVTCLDVSAHAIESAKANVELNGFSDR 300 P T TVL+CF HTGSF L+AC YGAK T +D+S HAIE+AK N LNGF++ Sbjct: 216 GPET-------TVLDCFTHTGSFMLNACLYGAKHATAVDISEHAIETAKRNAALNGFTN- 267 Query: 301 VEFVVDDAFAFLRNQVKGLEERSERATGKTDAKPGAKPASKTDTAKPMTAGGGRTWDVVI 360 VEFVV +AF +LR V+ G+ WDVVI Sbjct: 268 VEFVVANAFDYLRESVR----------------------------------AGKQWDVVI 293 Query: 361 LDPPAFAKTKSAVAGACRGYKDINLHGMKLVNEGGYLVTASCSYHMQPQLFLDTIAEAAK 420 +DPPAFAK+ AV A RGYKDINL+G+KLV +GG+ VT+SCSYH++P LF + IA+AA Sbjct: 294 IDPPAFAKSAHAVPKALRGYKDINLNGLKLVKDGGFFVTSSCSYHVRPHLFQEMIADAAF 353 Query: 421 DAGKVLRLIEWRAAGKDHPQILGVDEGHYLKFAIFEVRSK 460 DA KVLR + W AG DHP++L +EG YLKFAI+EV S+ Sbjct: 354 DAKKVLRQVYWNGAGYDHPKLLAAEEGDYLKFAIYEVHSR 393 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,834,660,997 Number of extensions: 121361756 Number of successful extensions: 300756 Number of sequences better than 1.0e-05: 918 Number of HSP's gapped: 299157 Number of HSP's successfully gapped: 1646 Length of query: 460 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 321 Effective length of database: 1,751,175,118 Effective search space: 562127212878 Effective search space used: 562127212878 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)