BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0202.0004.p (270 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBA4.1 B3KBA4_9BACI Putative uncharacterized protein 346 1e-93 C1PT43.1 C1PT43_ALIAC Uncharacterized conserved protein 340 7e-92 B7DPQ6.1 B7DPQ6_9BACL Putative uncharacterized protein 339 1e-91 B1DJE8.1 B1DJE8_9BACL Putative uncharacterized protein 324 7e-87 C0GKX1.1 C0GKX1_9FIRM Putative uncharacterized protein 275 2e-72 >B3KBA4.1 B3KBA4_9BACI Putative uncharacterized protein Length = 268 Score = 346 bits (888), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 171/262 (65%), Positives = 217/262 (82%) Query: 5 SHFITICSDSIGDTAEAVVQAVIHQFQNQRVTIRRYGNVRHEDELRKLMEETAQLQGFVA 64 +HFI ICSDSIG+TAEAVVQA + QF+ ++RY NVR E+EL +LMEE A+ GFVA Sbjct: 6 THFIAICSDSIGETAEAVVQATLRQFELPNTEVKRYMNVRDEEELTELMEEVARRGGFVA 65 Query: 65 YTLVQPELREMIREEAVRLDLRIVDIMGPMMQAFIDTFDDAPQARPGLLHQLDEDYFRRI 124 YTLVQPELRE++REEAVRL++R VDIMGPMMQAF DTF+D P+ PGLLH+LD+ YFRR+ Sbjct: 66 YTLVQPELREVMREEAVRLNIRTVDIMGPMMQAFADTFNDYPKRLPGLLHRLDDSYFRRV 125 Query: 125 EAIEFTVACDDGRDLGAMLKADIVLLGMSRTSKTPLSIFLAHRGKKVVNYPIVPEIGPPQ 184 +A+EF V DDG+D+ A+LKADI+LLG+SR SKTPLS+FLAH+G K VN+PIVPE+ PP Sbjct: 126 DAMEFAVQYDDGKDVSAILKADIILLGVSRISKTPLSMFLAHKGYKTVNFPIVPEMSPPS 185 Query: 185 QLMSLPPNRLIGLTMKSEYMLKIRSERLKQLGLPAGSQYASLERITEEMEYAAVLFAKLG 244 QL + +IGLT++ E++LKIRSERLK +GLP QYA+LERI EE++YA L+ +LG Sbjct: 186 QLREVTNGTIIGLTIEPEHLLKIRSERLKVMGLPHQVQYAALERIQEELDYALSLYEELG 245 Query: 245 CPVIDITNKAIEETAGIIMGYI 266 CPVID+T+KAIEE+AG+IM Y+ Sbjct: 246 CPVIDVTDKAIEESAGLIMNYL 267 >C1PT43.1 C1PT43_ALIAC Uncharacterized conserved protein Length = 288 Score = 340 bits (873), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 160/260 (61%), Positives = 208/260 (80%) Query: 8 ITICSDSIGDTAEAVVQAVIHQFQNQRVTIRRYGNVRHEDELRKLMEETAQLQGFVAYTL 67 I ICSDS+GDTAEAVV AVIHQF +RV I RY VR EDE+R+++E Q GF+AYTL Sbjct: 18 IYICSDSLGDTAEAVVHAVIHQFDMRRVKIVRYAQVRTEDEIREVVEAAKQTGGFIAYTL 77 Query: 68 VQPELREMIREEAVRLDLRIVDIMGPMMQAFIDTFDDAPQARPGLLHQLDEDYFRRIEAI 127 VQPELREM++ E++RL +R+VDIMGPMMQAFIDTF D P+ +PGLLH L+EDYFRR++AI Sbjct: 78 VQPELREMMKMESIRLGVRVVDIMGPMMQAFIDTFHDHPKQKPGLLHVLNEDYFRRVDAI 137 Query: 128 EFTVACDDGRDLGAMLKADIVLLGMSRTSKTPLSIFLAHRGKKVVNYPIVPEIGPPQQLM 187 EF V DDGRD A+L+AD+VL+G+SRTSKTP+SIFLAH+G +V N P+VPE+ PP +L Sbjct: 138 EFAVKADDGRDPRALLQADVVLIGVSRTSKTPVSIFLAHKGLRVANLPLVPEVRPPAELY 197 Query: 188 SLPPNRLIGLTMKSEYMLKIRSERLKQLGLPAGSQYASLERITEEMEYAAVLFAKLGCPV 247 +P +R++GLTM E M++IRS+RLK +GLP +QYA +RI EE+ YA + LGCP+ Sbjct: 198 QVPRSRIVGLTMGVEQMMRIRSQRLKHMGLPVLAQYADRKRIEEELLYAESIVRDLGCPL 257 Query: 248 IDITNKAIEETAGIIMGYIT 267 ID+T++AIEETA I+ ++ Sbjct: 258 IDVTDRAIEETAQRILELVS 277 >B7DPQ6.1 B7DPQ6_9BACL Putative uncharacterized protein Length = 282 Score = 339 bits (870), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 159/260 (61%), Positives = 208/260 (80%) Query: 8 ITICSDSIGDTAEAVVQAVIHQFQNQRVTIRRYGNVRHEDELRKLMEETAQLQGFVAYTL 67 I ICSDS+GDTAEAVV AVIHQF +RV I RY VR EDE+R+++E Q GF+AYTL Sbjct: 12 IYICSDSLGDTAEAVVHAVIHQFDMRRVKIVRYAQVRTEDEIREVVEAAKQTGGFIAYTL 71 Query: 68 VQPELREMIREEAVRLDLRIVDIMGPMMQAFIDTFDDAPQARPGLLHQLDEDYFRRIEAI 127 VQPELREM++ E++RL +R+VDIMGPMMQAFIDTF D P+ +PGLLH L+E+YFRR++AI Sbjct: 72 VQPELREMMKMESIRLGVRVVDIMGPMMQAFIDTFHDHPKQKPGLLHVLNEEYFRRVDAI 131 Query: 128 EFTVACDDGRDLGAMLKADIVLLGMSRTSKTPLSIFLAHRGKKVVNYPIVPEIGPPQQLM 187 EF V DDGRD A+L+AD+VL+G+SRTSKTP+SIFLAH+G +V N P+VPE+ PP +L Sbjct: 132 EFAVKADDGRDPRALLQADVVLIGVSRTSKTPVSIFLAHKGLRVANLPLVPEVKPPAELY 191 Query: 188 SLPPNRLIGLTMKSEYMLKIRSERLKQLGLPAGSQYASLERITEEMEYAAVLFAKLGCPV 247 +P +R++GLTM E M++IRS+RLK +GLP +QYA +RI EE+ YA + LGCP+ Sbjct: 192 QVPRSRIVGLTMGVEQMMRIRSQRLKHMGLPVLAQYADRKRIEEELLYAESIVRDLGCPL 251 Query: 248 IDITNKAIEETAGIIMGYIT 267 ID+T++AIEETA I+ ++ Sbjct: 252 IDVTDRAIEETAQRILELVS 271 >B1DJE8.1 B1DJE8_9BACL Putative uncharacterized protein Length = 265 Score = 324 bits (830), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 143/260 (55%), Positives = 203/260 (78%) Query: 4 SSHFITICSDSIGDTAEAVVQAVIHQFQNQRVTIRRYGNVRHEDELRKLMEETAQLQGFV 63 S I +CSD++G+TAEAV +A + QF + V I+R+G+V+ E+E+ +++ E A+ GF+ Sbjct: 2 SEQIIYVCSDAVGETAEAVAKATLRQFASDHVKIKRFGHVKTEEEVIQIVAEAARTGGFI 61 Query: 64 AYTLVQPELREMIREEAVRLDLRIVDIMGPMMQAFIDTFDDAPQARPGLLHQLDEDYFRR 123 +YTLVQPELRE+++EE+ R +R VD+MGPMMQAF+DTF +P+ +PGLLH +D+DY+RR Sbjct: 62 SYTLVQPELRELMKEESFRWGVRAVDVMGPMMQAFVDTFGSSPKRKPGLLHSIDDDYYRR 121 Query: 124 IEAIEFTVACDDGRDLGAMLKADIVLLGMSRTSKTPLSIFLAHRGKKVVNYPIVPEIGPP 183 +EAIEF V DDG+D +++A +VL+G+SRTSKTPLSIFL+H+G K N P++PE+ PP Sbjct: 122 MEAIEFAVKYDDGKDARGLMQAQVVLIGVSRTSKTPLSIFLSHKGIKTANLPLMPEVKPP 181 Query: 184 QQLMSLPPNRLIGLTMKSEYMLKIRSERLKQLGLPAGSQYASLERITEEMEYAAVLFAKL 243 +L P ++GLTMK E++L IR+ERLK LGLP +QYAS+ERI EE+ YA+ + Sbjct: 182 AELTPAPGRLIVGLTMKPEHLLHIRTERLKTLGLPESAQYASMERIMEELAYASSVMEAF 241 Query: 244 GCPVIDITNKAIEETAGIIM 263 CPVID+TN+AIEETAG+I+ Sbjct: 242 QCPVIDVTNRAIEETAGLII 261 >C0GKX1.1 C0GKX1_9FIRM Putative uncharacterized protein Length = 275 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 135/261 (51%), Positives = 185/261 (70%) Query: 8 ITICSDSIGDTAEAVVQAVIHQFQNQRVTIRRYGNVRHEDELRKLMEETAQLQGFVAYTL 67 + + SDSIG+TAE VV+AV QF + V I+R V D + ++EE AQ G +AYTL Sbjct: 10 VYLISDSIGETAEFVVKAVASQFNSGHVDIKRTPFVTDPDTIMDVVEEAAQANGMIAYTL 69 Query: 68 VQPELREMIREEAVRLDLRIVDIMGPMMQAFIDTFDDAPQARPGLLHQLDEDYFRRIEAI 127 V PELR++IREE+ + DL VD+MGPMM AF P PGL+ ++DE+YFRR+ AI Sbjct: 70 VLPELRQVIREESKKRDLITVDVMGPMMDAFGQLLGIDPHLEPGLVRRMDEEYFRRVAAI 129 Query: 128 EFTVACDDGRDLGAMLKADIVLLGMSRTSKTPLSIFLAHRGKKVVNYPIVPEIGPPQQLM 187 EF V DDG+D +L AD+VL+G+SRTSKTPLS++LAH+ K N P+VPE+ PP++L Sbjct: 130 EFAVKYDDGKDPRGLLLADVVLIGVSRTSKTPLSMYLAHKRLKGANLPLVPEVEPPEELF 189 Query: 188 SLPPNRLIGLTMKSEYMLKIRSERLKQLGLPAGSQYASLERITEEMEYAAVLFAKLGCPV 247 +PPN++IGLT+ + + +IR ERLK LGL A + YA++ERI EE+EYA + K+GCP+ Sbjct: 190 WVPPNKVIGLTISPQQLNEIRQERLKALGLHAQANYANMERILEELEYAEAIMRKVGCPI 249 Query: 248 IDITNKAIEETAGIIMGYITD 268 D+TNKA+EE A I+ I + Sbjct: 250 FDVTNKAVEEVANKILQVIRE 270 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,531,303,391 Number of extensions: 61107156 Number of successful extensions: 162394 Number of sequences better than 1.0e-05: 848 Number of HSP's gapped: 161112 Number of HSP's successfully gapped: 848 Length of query: 270 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 137 Effective length of database: 1,807,701,208 Effective search space: 247655065496 Effective search space used: 247655065496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)