BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0199.0013.p (337 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJ18.1 B1DJ18_9BACL Phosphate ABC transporter, inner membrane ... 278 7e-73 C3IZC7.1 C3IZC7_9BACI Phosphate ABC transporter, inner membrane ... 256 2e-66 B7Y764.1 B7Y764_9BACI Phosphate ABC transporter, inner membrane ... 256 2e-66 Q5KUB4.1 Q5KUB4_GEOKA Phosphate ABC transporter (Permease) 249 3e-64 Q3ADZ6.1 Q3ADZ6_CARHZ Phosphate ABC transporter, permease protein 229 2e-58 >B1DJ18.1 B1DJ18_9BACL Phosphate ABC transporter, inner membrane subunit PstC Length = 316 Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 141/279 (50%), Positives = 184/279 (65%), Gaps = 1/279 (0%) Query: 36 GSLAEG-GISAKRHNRHLFSNTMFRYYFLFSILALCLVLGLVIVFIGKTALLLFDNISPL 94 GSL G G R R N +FRY + +CL+L L++ + +T +L F ++S Sbjct: 15 GSLLTGSGKPFDRRKRLFVMNRLFRYVCIACAGFVCLILFLILALMFRTGVLTFGDVSFS 74 Query: 95 DFFFSFNWSPEEEAFGAAAFIVNXXXXXXXXXXIAVPVSVGMAVLCAEIAPKWLTSFIRP 154 +FF S WSPE E +G FI I+VP+S+ +AV + P WL + +RP Sbjct: 75 EFFLSTEWSPETEQYGGLLFIFGTFALTLLTLIISVPLSLLIAVFLSTFVPAWLKNMLRP 134 Query: 155 VLDLLVGIPSIVYGYLGLTVLLPFLRRVSXXXXXXXXXXXXXXXXXXXXPTICRISDDAI 214 V+DLLVGIPS+VYGYLGLTVL+P +R V+ PTI RISDD+I Sbjct: 135 VMDLLVGIPSVVYGYLGLTVLIPLIRNVTGTGMGDGLLAASLVLTIMVLPTISRISDDSI 194 Query: 215 VAVPRKYRDAAYALGSTRLQVIMRVVLPAASRGIISAVILGMTRAVGETMAVVMVIGNTP 274 AVP+K+ DA+YALG+TR Q +++V++P+A GI+ AVILGM RA+GETMAVVMVIGNTP Sbjct: 195 TAVPKKFSDASYALGATRFQTVVKVLIPSARSGIMYAVILGMARAIGETMAVVMVIGNTP 254 Query: 275 QLAKSLFTPSSVLTSNIVMQISNVEFDSTWNYALHMMAF 313 Q+A SL P+SVLTSNIVMQI+NV FDSTWNYAL++M F Sbjct: 255 QIADSLLKPTSVLTSNIVMQIANVPFDSTWNYALYLMGF 293 >C3IZC7.1 C3IZC7_9BACI Phosphate ABC transporter, inner membrane subunit PstC Length = 310 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 138/274 (50%), Positives = 178/274 (64%), Gaps = 5/274 (1%) Query: 40 EGGISAKRHNRHLFSNTMFRYYFLFSILALCLVLGLVIVFIGKTALLLFDNISPLDFFFS 99 + G SAK ++ FR+ L SI+ L VL +++F+ +T L+F ++S +FFFS Sbjct: 20 QSGWSAKYA-----ADRFFRFLCLGSIIFLVGVLSAIVLFVSETGFLVFRDVSLWEFFFS 74 Query: 100 FNWSPEEEAFGAAAFIVNXXXXXXXXXXIAVPVSVGMAVLCAEIAPKWLTSFIRPVLDLL 159 W PE +GAA FI IA P+S+ +AV AEIAP WL ++R +LDLL Sbjct: 75 SRWDPEHGKYGAAVFIAGTLYLTLVTLLIATPISICVAVFIAEIAPPWLRQWLRTLLDLL 134 Query: 160 VGIPSIVYGYLGLTVLLPFLRRVSXXXXXXXXXXXXXXXXXXXXPTICRISDDAIVAVPR 219 VGIPSIVYGYLG T+L+P++R + PTI RI+DDA+ AVP Sbjct: 135 VGIPSIVYGYLGATLLIPWIREHTGAPVGDGFLAAAIVLSIMILPTITRITDDALCAVPN 194 Query: 220 KYRDAAYALGSTRLQVIMRVVLPAASRGIISAVILGMTRAVGETMAVVMVIGNTPQLAKS 279 ++R+A YALG T Q+I+RVVLPAA GI +AVILGM RA+GETMAVVMVIGN Q Sbjct: 195 EWREANYALGGTTFQMIVRVVLPAAKSGIAAAVILGMARAIGETMAVVMVIGNVAQFGFD 254 Query: 280 LFTPSSVLTSNIVMQISNVEFDSTWNYALHMMAF 313 L TP+SVLTS+IVMQI NV+F ST N+AL+MMAF Sbjct: 255 LVTPTSVLTSHIVMQILNVDFQSTTNHALYMMAF 288 >B7Y764.1 B7Y764_9BACI Phosphate ABC transporter, inner membrane subunit PstC Length = 310 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 138/274 (50%), Positives = 178/274 (64%), Gaps = 5/274 (1%) Query: 40 EGGISAKRHNRHLFSNTMFRYYFLFSILALCLVLGLVIVFIGKTALLLFDNISPLDFFFS 99 + G SAK ++ FR+ L SI+ L VL +++F+ +T L+F ++S +FFFS Sbjct: 20 QSGWSAKYA-----ADRFFRFLCLGSIIFLVGVLSAIVLFVSETGFLVFRDVSLWEFFFS 74 Query: 100 FNWSPEEEAFGAAAFIVNXXXXXXXXXXIAVPVSVGMAVLCAEIAPKWLTSFIRPVLDLL 159 W PE +GAA FI IA P+S+ +AV AEIAP WL ++R +LDLL Sbjct: 75 SRWDPEHGKYGAAVFIAGTLYLTLVTLLIATPISICVAVFIAEIAPPWLRQWLRTLLDLL 134 Query: 160 VGIPSIVYGYLGLTVLLPFLRRVSXXXXXXXXXXXXXXXXXXXXPTICRISDDAIVAVPR 219 VGIPSIVYGYLG T+L+P++R + PTI RI+DDA+ AVP Sbjct: 135 VGIPSIVYGYLGATLLIPWIREHTGAPVGDGFLAAAIVLSIMILPTITRITDDALCAVPN 194 Query: 220 KYRDAAYALGSTRLQVIMRVVLPAASRGIISAVILGMTRAVGETMAVVMVIGNTPQLAKS 279 ++R+A YALG T Q+I+RVVLPAA GI +AVILGM RA+GETMAVVMVIGN Q Sbjct: 195 EWREANYALGGTTFQMIVRVVLPAAKSGIAAAVILGMARAIGETMAVVMVIGNVAQFGFD 254 Query: 280 LFTPSSVLTSNIVMQISNVEFDSTWNYALHMMAF 313 L TP+SVLTS+IVMQI NV+F ST N+AL+MMAF Sbjct: 255 LVTPTSVLTSHIVMQILNVDFQSTTNHALYMMAF 288 >Q5KUB4.1 Q5KUB4_GEOKA Phosphate ABC transporter (Permease) Length = 311 Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 126/252 (50%), Positives = 171/252 (67%) Query: 55 NTMFRYYFLFSILALCLVLGLVIVFIGKTALLLFDNISPLDFFFSFNWSPEEEAFGAAAF 114 + +FR++ L SI+ L +VL +++F+ KT LL+F ++SP +FFFS W PE +GAA F Sbjct: 29 DRLFRFFCLTSIVFLIVVLSAIVLFVSKTGLLVFRDVSPWEFFFSSRWDPEHHRYGAAVF 88 Query: 115 IVNXXXXXXXXXXIAVPVSVGMAVLCAEIAPKWLTSFIRPVLDLLVGIPSIVYGYLGLTV 174 I IA P+S+ AV AE+AP L ++R +LDLLVGIPSIVYGYLG T+ Sbjct: 89 ITGTLYVTFVTLLIATPISISTAVFIAEMAPPRLQQWLRTLLDLLVGIPSIVYGYLGATL 148 Query: 175 LLPFLRRVSXXXXXXXXXXXXXXXXXXXXPTICRISDDAIVAVPRKYRDAAYALGSTRLQ 234 L+P++R+++ PTI RI+DDA+ AVP ++R+A YALG T+++ Sbjct: 149 LVPWIRKLTGAPVGDGILAAAIVLSMMILPTITRITDDALCAVPNEWREANYALGGTKIE 208 Query: 235 VIMRVVLPAASRGIISAVILGMTRAVGETMAVVMVIGNTPQLAKSLFTPSSVLTSNIVMQ 294 +I +++LPAA GI +AVILGM RA+GETMAVVMVIGN Q L TPSSVLTS+IVMQ Sbjct: 209 MISKILLPAAKSGIAAAVILGMARAIGETMAVVMVIGNVAQWGFDLVTPSSVLTSHIVMQ 268 Query: 295 ISNVEFDSTWNY 306 I NV+F ST N+ Sbjct: 269 ILNVDFQSTTNH 280 >Q3ADZ6.1 Q3ADZ6_CARHZ Phosphate ABC transporter, permease protein Length = 289 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 111/257 (43%), Positives = 165/257 (64%) Query: 57 MFRYYFLFSILALCLVLGLVIVFIGKTALLLFDNISPLDFFFSFNWSPEEEAFGAAAFIV 116 + +Y F + + +C + ++VF+GK L F +SPL+FF S W+P++ FGA FI Sbjct: 9 LIQYIFFLTAMVVCFTIAAIVVFVGKQGLKTFLAVSPLEFFGSTKWAPDQNQFGALTFIS 68 Query: 117 NXXXXXXXXXXIAVPVSVGMAVLCAEIAPKWLTSFIRPVLDLLVGIPSIVYGYLGLTVLL 176 + + P+ + A+ A+I P WLT ++R V+DLL GIPS+VYG++GLT+++ Sbjct: 69 SSFFVTLLALLLGGPLGIAGAMFSAKIVPSWLTGYLRTVVDLLAGIPSVVYGWVGLTIIV 128 Query: 177 PFLRRVSXXXXXXXXXXXXXXXXXXXXPTICRISDDAIVAVPRKYRDAAYALGSTRLQVI 236 P +R++S PT+ +++DA+ +VPR +A+YALG+TR Q I Sbjct: 129 PAIRQISPNQNGFGLLAAGIILAIMILPTVLSLAEDALRSVPRSLEEASYALGATRWQTI 188 Query: 237 MRVVLPAASRGIISAVILGMTRAVGETMAVVMVIGNTPQLAKSLFTPSSVLTSNIVMQIS 296 V+LPAA+ GII+ ++LGM RA+GETMAV MVIGNTP +SLF P++ LTS IVM++ Sbjct: 189 WHVLLPAAAPGIITGLVLGMARAIGETMAVQMVIGNTPLFPRSLFQPTATLTSEIVMEMG 248 Query: 297 NVEFDSTWNYALHMMAF 313 N F+STWN AL +MAF Sbjct: 249 NTAFNSTWNNALFLMAF 265 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,568,803,527 Number of extensions: 54764275 Number of successful extensions: 217053 Number of sequences better than 1.0e-05: 3161 Number of HSP's gapped: 214114 Number of HSP's successfully gapped: 3588 Length of query: 337 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 201 Effective length of database: 1,779,438,163 Effective search space: 357667070763 Effective search space used: 357667070763 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)