BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0199.0008.p (324 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7GLB9.1 B7GLB9_ANOFW ABC-type multidrug transport system, perme... 305 5e-81 A4ILM8.1 A4ILM8_GEOTN ABC transporter (Permease), putative 299 3e-79 Q2B1F3.1 Q2B1F3_9BACI ABC transporter, permease 298 3e-79 B4BI10.1 B4BI10_9BACI ABC-2 type transporter 298 3e-79 C3J332.1 C3J332_9BACI ABC-2 type transporter 298 5e-79 >B7GLB9.1 B7GLB9_ANOFW ABC-type multidrug transport system, permease component Length = 343 Score = 305 bits (780), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 164/326 (50%), Positives = 207/326 (63%), Gaps = 5/326 (1%) Query: 1 MALMFIAPLLVLSLMSLVFNGDAYEPKIGVSGGAVP--FTRALEAQNATVIAYESADEGK 58 +ALM IAP+ VL LM LVFNG+ YEPKI + VP AL+ +A V + + Sbjct: 21 LALMIIAPMFVLFLMDLVFNGETYEPKIAIDSN-VPQQLADALQETDAHVTTM-TKKKAM 78 Query: 59 AALQESELDALITLNGTTPEVMLEGSNPXXXXXXXXXXXXXXXXXQSAGGEGQIQPKISY 118 L + ++DA I ++ T + LEGS+P + + Y Sbjct: 79 DKLDDQQIDAFIEMDKATLRITLEGSDPSVSKQVLMTVQKAAQTLMPPMKQ-TLTIDTVY 137 Query: 119 LYGAEDMKTIDRFGPIMIGXXXXXXXXLIAGVSFLRERTTGTLERLLSTPLKRWEIVLGY 178 +YG+E M D FGP++IG LIAGVSFLRERT+GTLERLL+TPLKRWEIV+GY Sbjct: 138 MYGSEHMALFDNFGPVLIGFFIFFFVFLIAGVSFLRERTSGTLERLLATPLKRWEIVIGY 197 Query: 179 VCGFGIFTVFQALLISWFSIQVLGIMMAGSFGYVXXXXXXXXXXXXXXXXXXXXYASNEL 238 V GFGIFT QA IS F+I VL +MM GSFGYV +A+NEL Sbjct: 198 VIGFGIFTTIQATFISLFAIHVLNMMMEGSFGYVLLVTFLFAMTALTLGTLLSAFANNEL 257 Query: 239 QMIQFIPLVIVPQIFLSGLFPLDTLPLWLQRVGLATPIYYGSEALMNIMIRGKGWSAIAL 298 QMIQFIPLV+VPQ+F SGLF LDT+ WL+ +G+A P+YYG++AL IMIRGKGW AI+ Sbjct: 258 QMIQFIPLVVVPQVFFSGLFNLDTMEPWLRSIGVAMPLYYGADALREIMIRGKGWEAISF 317 Query: 299 DVYALIGFSLLFMLLNVLALRKHRKM 324 DVY L+GFSLLFM+LNVLAL+K+RK+ Sbjct: 318 DVYVLVGFSLLFMILNVLALKKYRKL 343 >A4ILM8.1 A4ILM8_GEOTN ABC transporter (Permease), putative Length = 341 Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 154/325 (47%), Positives = 207/325 (63%), Gaps = 5/325 (1%) Query: 1 MALMFIAPLLVLSLMSLVFNGDAYEPKIGVSGGAVPFTRALEAQNATVIAYE-SADEGKA 59 +ALM +AP+ VL LM VFNG+ Y P I VS VP + + A E SA + + Sbjct: 21 LALMIVAPMFVLLLMDFVFNGEKYTPVIAVSDN-VPDAVVDKLKEAGANVKELSAKQARK 79 Query: 60 ALQESELDALITLNGTTPEVMLEGSNPXXXXXXXXXXXXXXXXXQSAGGEGQIQPKISYL 119 L + E+DA + +NG+ P + LEGS+P QS Q K +Y Sbjct: 80 QLDDQEIDAWLNMNGSAPHITLEGSDPTANQAALATVQKAF---QSMVPTPSFQLKTTYW 136 Query: 120 YGAEDMKTIDRFGPIMIGXXXXXXXXLIAGVSFLRERTTGTLERLLSTPLKRWEIVLGYV 179 +G+ DM + D FGP++IG LIAGVSFLRERT GTLERL++TPL+RWEIV GY+ Sbjct: 137 HGSSDMASFDYFGPVLIGVFIFFFVFLIAGVSFLRERTNGTLERLMATPLRRWEIVAGYM 196 Query: 180 CGFGIFTVFQALLISWFSIQVLGIMMAGSFGYVXXXXXXXXXXXXXXXXXXXXYASNELQ 239 GFG+FT QA LISWF+I VL +MM GSFGYV +A++ELQ Sbjct: 197 IGFGLFTTVQASLISWFAIDVLDMMMEGSFGYVLIITFLLAMTALALGMLLSAFANSELQ 256 Query: 240 MIQFIPLVIVPQIFLSGLFPLDTLPLWLQRVGLATPIYYGSEALMNIMIRGKGWSAIALD 299 M+QFIPLV++PQ+F SGLF LDT+ WL+ + + P+ YG+ AL +IM+RG+GWS IA D Sbjct: 257 MMQFIPLVVIPQVFFSGLFNLDTMEEWLRSLSVVMPLTYGANALRDIMVRGQGWSTIAAD 316 Query: 300 VYALIGFSLLFMLLNVLALRKHRKM 324 +Y L+GF++LFM+LNV+AL+K+RK+ Sbjct: 317 IYVLLGFTVLFMVLNVVALKKYRKL 341 >Q2B1F3.1 Q2B1F3_9BACI ABC transporter, permease Length = 342 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 158/324 (48%), Positives = 211/324 (65%), Gaps = 2/324 (0%) Query: 1 MALMFIAPLLVLSLMSLVFNGDAYEPKIGVSGGAVPFTRALEAQNATVIAYESADEGKAA 60 MALM +AP+L+L+++ LVFNG+ Y PKIG++G ++ LE Q+A V Y+SAD + Sbjct: 21 MALMILAPILILTMLHLVFNGEDYNPKIGLAGIPSEWSERLEFQDAAVTEYDSADHAEDD 80 Query: 61 LQESELDALITLNGTTPEVMLEGSNPXXXXXXXXXXXXXXXXXQSAGGEGQIQPKISYLY 120 L+E +LDA +++N TP V LEGS+P Q G E + KIS L+ Sbjct: 81 LKEGKLDAYLSMNNGTPAVRLEGSDPSISREAAQEVQEAFKQLQPGGQESGL--KISQLH 138 Query: 121 GAEDMKTIDRFGPIMIGXXXXXXXXLIAGVSFLRERTTGTLERLLSTPLKRWEIVLGYVC 180 G+ DM D FGP+++G LIAGVSFLRERTTGTLERLL++PL+RWEIV GY+ Sbjct: 139 GSPDMGQFDYFGPVLVGFFTFFFVFLIAGVSFLRERTTGTLERLLASPLRRWEIVGGYIA 198 Query: 181 GFGIFTVFQALLISWFSIQVLGIMMAGSFGYVXXXXXXXXXXXXXXXXXXXXYASNELQM 240 GFGIFT+ QA +I+ F++ VL + M GSF YV +A+NELQM Sbjct: 199 GFGIFTMLQASIIASFAVYVLDMRMEGSFLYVLLTVLLLSLTALTLGIFLSAFANNELQM 258 Query: 241 IQFIPLVIVPQIFLSGLFPLDTLPLWLQRVGLATPIYYGSEALMNIMIRGKGWSAIALDV 300 IQFIPL +VPQIF SGLF L+T+ WL +G TP+YYG+ AL ++M+RG G+ I D+ Sbjct: 259 IQFIPLAVVPQIFFSGLFNLETISGWLSWIGPLTPLYYGANALRDVMVRGYGFGEICPDL 318 Query: 301 YALIGFSLLFMLLNVLALRKHRKM 324 L GFSL F LLNVLAL+++RK+ Sbjct: 319 IVLAGFSLAFALLNVLALKRYRKI 342 >B4BI10.1 B4BI10_9BACI ABC-2 type transporter Length = 341 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 154/325 (47%), Positives = 207/325 (63%), Gaps = 5/325 (1%) Query: 1 MALMFIAPLLVLSLMSLVFNGDAYEPKIGVSGGAVPFTRALEAQNATVIAYE-SADEGKA 59 +ALM +AP+ VL LM VFNG+ Y P I VS VP + + A E SA + + Sbjct: 21 LALMIVAPMFVLLLMDFVFNGEEYTPVIAVSDN-VPDAVVDKLKEAGANVKELSAKQARK 79 Query: 60 ALQESELDALITLNGTTPEVMLEGSNPXXXXXXXXXXXXXXXXXQSAGGEGQIQPKISYL 119 L + E+DA + +NG+ P + LEGS+P QS Q K +Y Sbjct: 80 QLDDQEIDAWLNMNGSAPHITLEGSDPTANQAALATVQKAF---QSMVPTPSFQLKTTYW 136 Query: 120 YGAEDMKTIDRFGPIMIGXXXXXXXXLIAGVSFLRERTTGTLERLLSTPLKRWEIVLGYV 179 +G+ DM + D FGP++IG LIAGVSFLRERT GTLERL++TPL+RWEIV GY+ Sbjct: 137 HGSSDMASFDYFGPVLIGVFIFFFVFLIAGVSFLRERTNGTLERLMATPLRRWEIVAGYM 196 Query: 180 CGFGIFTVFQALLISWFSIQVLGIMMAGSFGYVXXXXXXXXXXXXXXXXXXXXYASNELQ 239 GFG+FT QA LISWF+I VL +MM GSFGYV +A++ELQ Sbjct: 197 IGFGLFTTVQASLISWFAIDVLDMMMEGSFGYVLIITFLLAMTALALGMLLSAFANSELQ 256 Query: 240 MIQFIPLVIVPQIFLSGLFPLDTLPLWLQRVGLATPIYYGSEALMNIMIRGKGWSAIALD 299 M+QFIPLV++PQ+F SGLF LDT+ WL+ + + P+ YG+ AL +IM+RG+GWS IA D Sbjct: 257 MMQFIPLVVIPQVFFSGLFNLDTMEEWLRSLSVVMPLTYGANALRDIMVRGQGWSTIAAD 316 Query: 300 VYALIGFSLLFMLLNVLALRKHRKM 324 +Y L+GF++LFM+LNV+AL+K+RK+ Sbjct: 317 IYVLLGFTVLFMVLNVVALKKYRKL 341 >C3J332.1 C3J332_9BACI ABC-2 type transporter Length = 341 Score = 298 bits (762), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 154/325 (47%), Positives = 209/325 (64%), Gaps = 5/325 (1%) Query: 1 MALMFIAPLLVLSLMSLVFNGDAYEPKIGVSGGAVPFTRALEAQNATVIAYE-SADEGKA 59 +ALM +AP+ VL LM LVFNG+ Y+P I VS VP + + A E S + + Sbjct: 21 LALMIVAPMFVLLLMDLVFNGEEYKPAIAVSEH-VPEAVVDKLKEAGAKVKELSVKQARK 79 Query: 60 ALQESELDALITLNGTTPEVMLEGSNPXXXXXXXXXXXXXXXXXQSAGGEGQIQPKISYL 119 L + ++DA + +NG+ V LEGS+P QS + Q K +Y Sbjct: 80 QLDDQDIDAWLDMNGSALHVTLEGSDPTANQAVMAAVQKAF---QSMAPKPPFQLKTTYW 136 Query: 120 YGAEDMKTIDRFGPIMIGXXXXXXXXLIAGVSFLRERTTGTLERLLSTPLKRWEIVLGYV 179 +G+ DM + D FGP++IG LIAGVSFLRERT GT+ERL++TPL+RWE+V GY+ Sbjct: 137 HGSSDMASFDYFGPVLIGFFVFFFVFLIAGVSFLRERTNGTIERLMATPLRRWEMVAGYM 196 Query: 180 CGFGIFTVFQALLISWFSIQVLGIMMAGSFGYVXXXXXXXXXXXXXXXXXXXXYASNELQ 239 GFG+FT QA LISWF+I VL +MM GSF YV +A+NELQ Sbjct: 197 IGFGLFTTIQASLISWFAIDVLDMMMEGSFWYVLLITFLLAMTALALGMLLSAFANNELQ 256 Query: 240 MIQFIPLVIVPQIFLSGLFPLDTLPLWLQRVGLATPIYYGSEALMNIMIRGKGWSAIALD 299 M+QFIPLV+VPQ+F SGLF LDT+ WL+ + + P+ YG++AL +IM+RG+G+ AIA+D Sbjct: 257 MVQFIPLVVVPQVFFSGLFNLDTMEEWLRSLSVIMPLTYGADALRDIMVRGEGFGAIAVD 316 Query: 300 VYALIGFSLLFMLLNVLALRKHRKM 324 VY L+GF+LLFMLLNV+AL+K+RK+ Sbjct: 317 VYVLLGFTLLFMLLNVVALKKYRKL 341 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.141 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,589,580,662 Number of extensions: 55645233 Number of successful extensions: 170549 Number of sequences better than 1.0e-05: 664 Number of HSP's gapped: 170180 Number of HSP's successfully gapped: 676 Length of query: 324 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 188 Effective length of database: 1,779,438,163 Effective search space: 334534374644 Effective search space used: 334534374644 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)