BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0199.0007.p (254 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7DP86.1 B7DP86_9BACL Transcriptional regulator, TetR family 219 1e-55 C2W898.1 C2W898_BACCE Transcriptional regulator, TetR 217 9e-55 C1PUF9.1 C1PUF9_ALIAC Transcriptional regulator, TetR family 216 2e-54 C3B3R7.1 C3B3R7_BACMY Transcriptional regulator, TetR 211 4e-53 C3ALR5.1 C3ALR5_BACMY Transcriptional regulator, TetR 211 4e-53 >B7DP86.1 B7DP86_9BACL Transcriptional regulator, TetR family Length = 224 Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 100/210 (47%), Positives = 148/210 (70%) Query: 13 EEWISELLAISEEEKMTPKQLAILQAGIEVFSEKGYAAAATSEIAQRAGVAEGTIFRYYK 72 ++W++EL+ ++E++++T +QL+IL+A +EVF+EKG+AAA+TSEIAQRAGVAEGTIFR+YK Sbjct: 6 DQWLTELVRLNEDDRVTDRQLSILRAAVEVFAEKGFAAASTSEIAQRAGVAEGTIFRHYK 65 Query: 73 TKKDLLLSIVSPAMTKMIAPFVLRNFDGVLDVPFDSYEAFMRAFMVNRLEFARKNFKILR 132 TKKDLLLSI P + + + PF+LR+ D +L + +E F+RA + NRL+FA K ++LR Sbjct: 66 TKKDLLLSITVPVIDEFVGPFLLRDLDTILTAQHERFEDFLRAVLFNRLQFANKYAQVLR 125 Query: 133 IFVQEIPFQPALREQFIENVIGKVLERVTAITEHFKAKGEVIDAPTPSIIRFTISSVIGY 192 I QEIPF P L+ Q V VL+R+ I EHF+ KGE+ P P++IR T+S ++ + Sbjct: 126 ILAQEIPFHPELKAQLKPYVTENVLKRLVGIIEHFQEKGEIARIPAPTVIRLTVSVILSH 185 Query: 193 XXXXXXXXPDKDWDDAAEINLTLDFMLHGI 222 D W D EI +T+ F++ G+ Sbjct: 186 VVLRHILFHDAPWQDDEEIEMTVRFIVQGL 215 >C2W898.1 C2W898_BACCE Transcriptional regulator, TetR Length = 217 Score = 217 bits (552), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 99/213 (46%), Positives = 154/213 (72%), Gaps = 1/213 (0%) Query: 12 QEEWISELLAISEEEKMTPKQLAILQAGIEVFSEKGYAAAATSEIAQRAGVAEGTIFRYY 71 +++W+ EL+A ++ +K +QL IL+A +++F EKGYA+ +TSEIA+RAGVAEGTIFRYY Sbjct: 2 KKDWLEELIASADTDKRNERQLRILEAAVDMFGEKGYASTSTSEIAKRAGVAEGTIFRYY 61 Query: 72 KTKKDLLLSIVSPAMTKMIAPFVLRNF-DGVLDVPFDSYEAFMRAFMVNRLEFARKNFKI 130 KTKKDLLL++V P +TK APF ++ F +L+ +++YE F+R + NR EFA+K+F + Sbjct: 62 KTKKDLLLAVVMPTLTKFAAPFFIQAFAKEILEKTYETYEEFLRKAIRNRFEFAKKHFPM 121 Query: 131 LRIFVQEIPFQPALREQFIENVIGKVLERVTAITEHFKAKGEVIDAPTPSIIRFTISSVI 190 L+I +QE+PFQP L+ + + V ++ R I HF+ +G++I+ PTPS+IRFT+S+++ Sbjct: 122 LKILIQEVPFQPELKNEIQQLVEKELFSRFKKIIVHFQEQGQIIEIPTPSVIRFTLSAIM 181 Query: 191 GYXXXXXXXXPDKDWDDAAEINLTLDFMLHGIA 223 G P++ WDD AEI T+ F+L+G+ Sbjct: 182 GLILTRFLLLPEEKWDDEAEIENTIQFILYGLT 214 >C1PUF9.1 C1PUF9_ALIAC Transcriptional regulator, TetR family Length = 224 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 98/210 (46%), Positives = 148/210 (70%) Query: 13 EEWISELLAISEEEKMTPKQLAILQAGIEVFSEKGYAAAATSEIAQRAGVAEGTIFRYYK 72 ++W++EL+ ++E++++T +QL IL+A +EVF+EKG+AAA+TSEIAQRAGVAEGTIFR+YK Sbjct: 6 DQWLTELVRLNEDDRVTDRQLNILRAAVEVFAEKGFAAASTSEIAQRAGVAEGTIFRHYK 65 Query: 73 TKKDLLLSIVSPAMTKMIAPFVLRNFDGVLDVPFDSYEAFMRAFMVNRLEFARKNFKILR 132 TKKDLLLSI P + + + PF+LR+ + +L + +E F+RA + NRL+FA+K ++LR Sbjct: 66 TKKDLLLSITVPVIDEFVGPFLLRDLETILTAQHERFEDFLRAVLFNRLQFAKKYAQVLR 125 Query: 133 IFVQEIPFQPALREQFIENVIGKVLERVTAITEHFKAKGEVIDAPTPSIIRFTISSVIGY 192 I QEIPF P L+ Q + V VL+R+ I EHF+ KGE+ P ++IR T+S ++ + Sbjct: 126 ILAQEIPFHPELKAQLKQYVTENVLKRLVGIIEHFQEKGEIARIPARTVIRLTVSVILSH 185 Query: 193 XXXXXXXXPDKDWDDAAEINLTLDFMLHGI 222 D W D EI +T+ F++ G+ Sbjct: 186 VVLRHILFHDAPWRDDEEIEMTVRFIVQGL 215 >C3B3R7.1 C3B3R7_BACMY Transcriptional regulator, TetR Length = 219 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 95/213 (44%), Positives = 152/213 (71%), Gaps = 1/213 (0%) Query: 12 QEEWISELLAISEEEKMTPKQLAILQAGIEVFSEKGYAAAATSEIAQRAGVAEGTIFRYY 71 +++W+ EL+A ++ +K +Q+ IL+A +++F EKGYA+ +TSEIA+RAGVAEGTIFRYY Sbjct: 2 KKDWLEELIAATDTDKRNERQMRILEAAVDMFGEKGYASTSTSEIAKRAGVAEGTIFRYY 61 Query: 72 KTKKDLLLSIVSPAMTKMIAPFVLRNF-DGVLDVPFDSYEAFMRAFMVNRLEFARKNFKI 130 KTKKDLLL++V P +TK APF ++ F +L+ +++YE F+R + NR EFA+K+F + Sbjct: 62 KTKKDLLLAVVMPTLTKFAAPFFVQAFAKEILENTYETYEEFLRKAIRNRFEFAKKHFPM 121 Query: 131 LRIFVQEIPFQPALREQFIENVIGKVLERVTAITEHFKAKGEVIDAPTPSIIRFTISSVI 190 L+I +QE+PFQP L+ + + V ++ R + HF+ +G++I+ P PS+IRFT+S+++ Sbjct: 122 LKILIQEVPFQPELKNEIQQLVEKELFSRFKKLIVHFQEQGQIIEMPIPSVIRFTLSAIM 181 Query: 191 GYXXXXXXXXPDKDWDDAAEINLTLDFMLHGIA 223 G P++ WDD EI T+ F+L+G+ Sbjct: 182 GLILTRFLLLPEEKWDDEVEIENTIQFILYGLT 214 >C3ALR5.1 C3ALR5_BACMY Transcriptional regulator, TetR Length = 219 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 95/213 (44%), Positives = 152/213 (71%), Gaps = 1/213 (0%) Query: 12 QEEWISELLAISEEEKMTPKQLAILQAGIEVFSEKGYAAAATSEIAQRAGVAEGTIFRYY 71 +++W+ EL+A ++ +K +Q+ IL+A +++F EKGYA+ +TSEIA+RAGVAEGTIFRYY Sbjct: 2 KKDWLEELIAATDTDKRNERQMRILEAAVDMFGEKGYASTSTSEIAKRAGVAEGTIFRYY 61 Query: 72 KTKKDLLLSIVSPAMTKMIAPFVLRNF-DGVLDVPFDSYEAFMRAFMVNRLEFARKNFKI 130 KTKKDLLL++V P +TK APF ++ F +L+ +++YE F+R + NR EFA+K+F + Sbjct: 62 KTKKDLLLAVVMPTLTKFAAPFFVQAFAKEILENTYETYEEFLRKAIRNRFEFAKKHFPM 121 Query: 131 LRIFVQEIPFQPALREQFIENVIGKVLERVTAITEHFKAKGEVIDAPTPSIIRFTISSVI 190 L+I +QE+PFQP L+ + + V ++ R + HF+ +G++I+ P PS+IRFT+S+++ Sbjct: 122 LKILIQEVPFQPELKNEIQQLVEKELFSRFKKLIVHFQEQGQIIEMPIPSVIRFTLSAIM 181 Query: 191 GYXXXXXXXXPDKDWDDAAEINLTLDFMLHGIA 223 G P++ WDD EI T+ F+L+G+ Sbjct: 182 GLILTRFLLLPEEKWDDEVEIENTIQFILYGLT 214 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,319,714,331 Number of extensions: 47118221 Number of successful extensions: 137125 Number of sequences better than 1.0e-05: 514 Number of HSP's gapped: 137278 Number of HSP's successfully gapped: 514 Length of query: 254 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 121 Effective length of database: 1,807,701,208 Effective search space: 218731846168 Effective search space used: 218731846168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)