BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0199.0006.p (1336 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DHB5.1 B1DHB5_9BACL Fibronectin type III domain protein 512 e-143 B1D8T5.1 B1D8T5_9BACL S-layer domain protein 301 2e-79 Q0B064.1 Q0B064_SYNWW Putative uncharacterized protein 283 1e-73 B8I5B9.1 B8I5B9_CLOCE Glycoside hydrolase family 10 252 2e-64 B1D969.1 B1D969_9BACL Cellulosome anchoring protein cohesin region 247 5e-63 >B1DHB5.1 B1DHB5_9BACL Fibronectin type III domain protein Length = 893 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 290/627 (46%), Positives = 391/627 (62%), Gaps = 21/627 (3%) Query: 713 APGAPVLQTAVPGNGTVSLNWEPAAGASGYTVYQSTVPGNY-DQPAGTVAGSVYSYNAAG 771 AP P AV GN V+LNW AGA+ Y +Y +T G Y D TV S +YN Sbjct: 285 APANPQELNAVGGNRQVTLNWSTVAGATYYNIYMATASGQYTDDEVATVTAS--TYNVED 342 Query: 772 LINGTTYYFTVKAANPGGGSALSNEVSATPRTVPAAPAILSTTAGDGQVTVAFAAPADNG 831 L+NGTTYYF VKA N GG A SNE SATP PAAP ++ TAGDGQVT+ F APAD+G Sbjct: 343 LVNGTTYYFVVKAGNAGGLGAKSNEASATPAIAPAAPTNVTATAGDGQVTLTFTAPADDG 402 Query: 832 GSSVTSYEITASPGGXXXXXXXXXXXXXGLVNGTAYTFTVKAKNGAGTGPASGPSNAVIP 891 GS +T YE+T PG GL NGT+YTFTVKA N AG +S SN V+P Sbjct: 403 GSPITRYEVTVVPGNVVVSGTSSTIVVTGLSNGTSYTFTVKAINAAGVSVSSAESNPVVP 462 Query: 892 MAPASGEGYPAEPAPPVISRVXXXXXXXXXXXXVLTYVNGKIEDLGAMSTVLADNRRHSI 951 + + P P P V +NGK+E+ G +T +++ Sbjct: 463 KSSS-----PTVPTTP-----------NTVNNSVDVLINGKVENAGTATTSKRNDQNVIT 506 Query: 952 VTLDQGKLDRILAEHQPGAKISVEFNNLSEVQTVELNGXXXXXXXXXXAAISVHTPKAAY 1011 +++DQ KL+ LA GA I++ N+ S++ ELNG A + + T +A Y Sbjct: 507 ISVDQKKLEDKLAAEGQGAVITIPVNSKSDIVIGELNGQMVKSMENKQAVVVIKTDQATY 566 Query: 1012 TIPLQLIRWDTAAGQPGTNASAADVRIQIEIAAPDXXXXXXXXXXXXXXXXXFLAGPLDF 1071 TIP Q I+ A + G S D+++QIEIA+P + P+ F Sbjct: 567 TIPAQQIQIGAIADKWGNTVSLQDIKVQIEIASPTADTLKVVENAAANGMFTLVVPPVGF 626 Query: 1072 SVKIVSGSQTSGLAGFSAYVQRSFSLPAGTDTSR-ATGIVMEPDGTVRHVPTRFVLQNGE 1130 ++K G+++ ++ F+ YV+R+ +PAG D S+ TG+V+EPDGTVRHVPT+ VL +G Sbjct: 627 TIKATYGNESIEISKFNVYVERTLPIPAGVDPSKITTGVVVEPDGTVRHVPTKIVLIDGM 686 Query: 1131 YAAVISSLTNSTYAIVSHPVEFKDMAGHWAQAAVDDLGTRLVVNGSGNGLFLPDRGITRA 1190 Y A I+SLTNSTY+IV HP+EF D+A HWA+AA++D+G+R+V+NG+G+GLF PDR ITRA Sbjct: 687 YYAQINSLTNSTYSIVWHPLEFLDVANHWAKAAINDMGSRMVINGTGDGLFSPDRDITRA 746 Query: 1191 EFAAVLVRGLGLQATGGTSPFTDVSSSDWYSSAVQTASRHQLITGFEDGSFRPDDAITRE 1250 EFAA+LVRGLGL+ +S F+DV++SDW+SSA+ TA +QLI GFEDG+FRP+D ITRE Sbjct: 747 EFAAILVRGLGLKPENRSSAFSDVNASDWFSSAINTAYVYQLINGFEDGTFRPNDRITRE 806 Query: 1251 QAVTMLAQAMQLTGLASEVS-SPPADLMKKFTDADQASAWALDSIAASLQAGLITGRSGT 1309 +A+TML++AM +TGL + +S A ++ F DA S WA+ A S+QAGL+TGRS Sbjct: 807 EAMTMLSRAMAITGLKATLSDQSEAAILYPFGDASNVSDWAIGGAADSIQAGLVTGRSAA 866 Query: 1310 GLAPQSHVTRAEVAVLLQRLLQKSGLI 1336 LAP++ +TRAEVA ++QRLLQ S LI Sbjct: 867 ELAPKAFITRAEVATIIQRLLQASELI 893 Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 85/212 (40%), Positives = 109/212 (51%), Gaps = 20/212 (9%) Query: 634 NGQVHLVWAPVSGATGYNVYTSTTSGEYXXXXXXXXXXXYSYDAVGLTNGTTYYFVVKAV 693 N QV L W+ V+GAT YN+Y +T SG+Y +Y+ L NGTTYYFVVKA Sbjct: 298 NRQVTLNWSTVAGATYYNIYMATASGQYTDDEVATVTAS-TYNVEDLVNGTTYYFVVKAG 356 Query: 694 NGGGDSAASAEVSATPQVPAPGAPVLQTAVPGNGTVSLNWEPAA--GASGYTVYQSTVPG 751 N GG A S E SATP + + TA G+G V+L + A G S T Y+ TV Sbjct: 357 NAGGLGAKSNEASATPAIAPAAPTNV-TATAGDGQVTLTFTAPADDGGSPITRYEVTVVP 415 Query: 752 NYDQPAGTVAGSVYSYNAAGLINGTTYYFTVKAANPGG---GSALSNEV---SATPRTVP 805 +GT + V + GL NGT+Y FTVKA N G SA SN V S++P TVP Sbjct: 416 GNVVVSGTSSTIVVT----GLSNGTSYTFTVKAINAAGVSVSSAESNPVVPKSSSP-TVP 470 Query: 806 AAPAILSTTAGDGQVTVAFAAPADNGGSSVTS 837 P + + V V +N G++ TS Sbjct: 471 TTPNTV-----NNSVDVLINGKVENAGTATTS 497 Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 82/183 (44%), Gaps = 10/183 (5%) Query: 541 GDAAVTLTWTPVSGATGYKVFASTVPGTYXXXXXXXXXXXDSYSAAGLTNGTTYYFVVKA 600 G+ VTL W+ V+GAT Y ++ +T G Y +Y+ L NGTTYYFVVKA Sbjct: 297 GNRQVTLNWSTVAGATYYNIYMATASGQYTDDEVATVTAS-TYNVEDLVNGTTYYFVVKA 355 Query: 601 VNGGGDSAASAEVSXXXXXXXXXXXXXXXXXXXNGQVHLVW-APV-SGATGYNVYTSTTS 658 N GG A S E + +GQV L + AP G + Y T Sbjct: 356 GNAGGLGAKSNE-ASATPAIAPAAPTNVTATAGDGQVTLTFTAPADDGGSPITRYEVTVV 414 Query: 659 GEYXXXXXXXXXXXYSYDAVGLTNGTTYYFVVKAVNGGGDSAASAEVSATPQVPAPGAPV 718 + GL+NGT+Y F VKA+N G S +SAE + P VP +P Sbjct: 415 PGNVVVSGTSSTIVVT----GLSNGTSYTFTVKAINAAGVSVSSAE--SNPVVPKSSSPT 468 Query: 719 LQT 721 + T Sbjct: 469 VPT 471 >B1D8T5.1 B1D8T5_9BACL S-layer domain protein Length = 835 Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 165/412 (40%), Positives = 241/412 (58%), Gaps = 7/412 (1%) Query: 929 VNGKIEDLGAMSTVLADNRRHSIVTLDQGKLDRILAEHQPGAKISVEFNNLSEVQTVELN 988 ++GK LG + + + S + L +L ILA + + ++V E+ Sbjct: 427 IDGKSYRLGELKSSTRGEQTVSTLHLSTDQLKEILASSDQQVTVVLPIKTGADVSIGEIP 486 Query: 989 GXXXXXXXXXXAAISVHTPKAAYTIPLQLIRWDTAAGQPGTNASAADVRIQIEIAAPDXX 1048 G A + + T A Y +P LI A ++ +A DV + +EI P Sbjct: 487 GDLLQLLIQKQATLRIETEYAVYALPTGLIDL---AKLFNSSVNAKDVTVSVEIGKPTAA 543 Query: 1049 XXXXXXXXXXXXXXXFLAGPLDFSVKIVSGSQTSGLAGFSAYVQRSFSLPAGTDTSRA-T 1107 A P+ FS+ I G + L F++YV+R ++P + T Sbjct: 544 MTALTQKAALQNQLNLAASPVQFSITISYGDKKVELTAFASYVKRMIAIPDNIAQNPGLT 603 Query: 1108 GIVMEPDGTVRHVPTRFVLQNGEYAAVISSLTNSTYAIVSHPVEFKDMAGHWAQAAVDDL 1167 IV+EPDG VR VPT+ V +G+ A+ISSLTNS YA+V+ V F DM+ HW++ AV+D+ Sbjct: 604 AIVVEPDGAVRPVPTKLVTIDGKRYALISSLTNSLYALVNKNVSFSDMSNHWSKNAVNDM 663 Query: 1168 GTRLVVNGSGNGLFLPDRGITRAEFAAVLVRGLGLQATGGTSPFTDVSSSDWYSSAVQTA 1227 +RL+V G+G+GLF PD+ ITRAEFAA++VR LGL+ G S F+DV +S WYS VQTA Sbjct: 664 ASRLIVGGAGDGLFYPDKAITRAEFAAIIVRALGLRMENGASSFSDVKASAWYSDDVQTA 723 Query: 1228 SRHQLITGFEDGSFRPDDAITREQAVTMLAQAMQLTGLASEVSSPPAD---LMKKFTDAD 1284 HQLI G+ DG+F P+D+ITREQA+T++A+AM LTG+ +E ++ L+ F+D Sbjct: 724 YSHQLINGYPDGNFHPNDSITREQAMTIIAKAMTLTGIQTETDLQESNANALINVFSDKS 783 Query: 1285 QASAWALDSIAASLQAGLITGRSGTGLAPQSHVTRAEVAVLLQRLLQKSGLI 1336 + SAWA IAA LQAG+++G+S + LAP +++TRAE V++QRLL KS LI Sbjct: 784 KISAWASSGIAACLQAGIVSGQSASILAPAANITRAEAVVMIQRLLSKSDLI 835 >Q0B064.1 Q0B064_SYNWW Putative uncharacterized protein Length = 1260 Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 141/408 (34%), Positives = 229/408 (56%), Gaps = 1/408 (0%) Query: 930 NGKIEDLGAMSTVLADNRRHSIVTLDQGKLDRILAEHQPGAKISVEFNNLSEVQTVELNG 989 NGK E ++T ++ + V ++ K++ LA A +++ + ++V LNG Sbjct: 851 NGKSETADTVTTTQEGDKTVTTVVINDKKVEEKLAREGNNAVVTIPVMSGADVVIGTLNG 910 Query: 990 XXXXXXXXXXAAISVHTPKAAYTIPLQLIRWDTAAGQPGTNASAADVRIQIEIAAPDXXX 1049 A + + T + YT+P I D +GQ G D+ + ++I+ P Sbjct: 911 HTVKNMESKNAVLEIKTGQLTYTLPASQINIDAVSGQFGKQVEFKDIAVSVKISKPAADT 970 Query: 1050 XXXXXXXXXXXXXXFLAGPLDFSVKIVSGSQTSGLAGFSAYVQRSFSLPAGTDTSR-ATG 1108 + P++F + SGS+T ++ FS YV+R ++P G D S+ TG Sbjct: 971 VKIVEDTADKSNYQIIVKPIEFEITCSSGSKTVEVSKFSTYVERMIAIPEGVDPSKITTG 1030 Query: 1109 IVMEPDGTVRHVPTRFVLQNGEYAAVISSLTNSTYAIVSHPVEFKDMAGHWAQAAVDDLG 1168 +++ DGT HVPT + +G+Y A I+SLTNS Y ++ P FKD+ HWA+ V+D+ Sbjct: 1031 VILNSDGTFSHVPTVITMIDGKYYAKINSLTNSAYLLIYSPKTFKDVGKHWAEKDVNDMA 1090 Query: 1169 TRLVVNGSGNGLFLPDRGITRAEFAAVLVRGLGLQATGGTSPFTDVSSSDWYSSAVQTAS 1228 +RL+++G GN LF P+R ITRAEF+AV+VR LGL+ + F DV + +WYS + +S Sbjct: 1091 SRLIISGVGNDLFEPERNITRAEFSAVMVRALGLRPEEYKNNFFDVKAGEWYSEYISASS 1150 Query: 1229 RHQLITGFEDGSFRPDDAITREQAVTMLAQAMQLTGLASEVSSPPADLMKKFTDADQASA 1288 + L+ G++DG F+PD ITR++A+ +LA+AM T L E+ + ++ F D S Sbjct: 1151 YYGLVRGYDDGIFKPDGNITRQEAMAILARAMDTTKLGEELEIDASHILAAFNDNADVSG 1210 Query: 1289 WALDSIAASLQAGLITGRSGTGLAPQSHVTRAEVAVLLQRLLQKSGLI 1336 WA DS + ++ G++TGR +AP ++TRAE ++++RLL SGLI Sbjct: 1211 WAKDSASKCVKTGVVTGRDNGRIAPLDNITRAETTIMVRRLLLNSGLI 1258 >B8I5B9.1 B8I5B9_CLOCE Glycoside hydrolase family 10 Length = 1495 Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 135/411 (32%), Positives = 235/411 (57%), Gaps = 6/411 (1%) Query: 929 VNGKIEDLGAMSTVLADNRRHSIVTLDQGKLDRILAEHQPGAKISVEFNNLSEVQTVELN 988 VNGK + + D ++ + + +D K+ +L + + + +E + S+V +LN Sbjct: 1088 VNGKEVPIAKAAIEYKDGKKVTSIVVDDTKVSELLGQK---SVVVLEPSTKSDVVIGQLN 1144 Query: 989 GXXXXXXXXXXAAISVHTPKAAYTIPLQLIRWDTAAGQPGTNASAADVRIQIEIAAPDXX 1048 A + + T +YT+P I + A G N D+++ + I+ Sbjct: 1145 AQTIKNMADKEAILEIKTENISYTMPASKINIEKVASALGNNIDLTDIKVNVSISGVSDS 1204 Query: 1049 XXXXXXXXXXXXXXXFLAGPLDFSVKIVSGSQTSGLAGFSAYVQRSFSLPAGTD-TSRAT 1107 + P++F++ +G++T ++ F+ Y++R+ ++P G + T Sbjct: 1205 VNNIVKDSAEKNNYKLASTPVEFNLTCSNGTKTVEISKFNGYIERTIAIPDGVNPNGVIT 1264 Query: 1108 GIVMEPDGTVRHVPTRFVLQNGEYAAVISSLTNSTYAIVSHPVEFKDMAGHWAQAAVDDL 1167 IV+ DG+ H+PT VL++G+Y A I+SLTNSTYA++S+ FKD+ HW++ AV ++ Sbjct: 1265 AIVLNKDGSFSHIPTAIVLKDGKYYAKINSLTNSTYALISNTKTFKDVENHWSKNAVKNI 1324 Query: 1168 GTRLVVNGSGNGLFLPDRGITRAEFAAVLVRGLGLQATG-GTSPFTDVSSSDWYSSAVQT 1226 +RL++NG+ N F+PD ITR EF +V+ +GL T G F DVSSS+ Y AV Sbjct: 1325 ASRLIMNGADNDSFVPDMAITRGEFIESIVKAIGLYRTDEGKDIFADVSSSNSYYDAVSI 1384 Query: 1227 ASRHQLITGFEDGSFRPDDAITREQAVTMLAQAMQLTGLASEVSSPP-ADLMKKFTDADQ 1285 AS + +I+G+ +G FRP ITR++A+T++A+ M++TGL + ++ AD + F D+D+ Sbjct: 1385 ASEYGIISGYGNGEFRPMSTITRQEAMTIVAKTMKITGLKVDYTTDEIADSLIGFKDSDK 1444 Query: 1286 ASAWALDSIAASLQAGLITGRSGTGLAPQSHVTRAEVAVLLQRLLQKSGLI 1336 + WA +S AA ++AG++ G+S T +AP+ ++TRAE A ++ +LL S LI Sbjct: 1445 LAVWARNSTAACVKAGIVAGKSLTVIAPEDNITRAETASVINKLLINSNLI 1495 >B1D969.1 B1D969_9BACL Cellulosome anchoring protein cohesin region Length = 611 Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 145/416 (34%), Positives = 228/416 (54%), Gaps = 8/416 (1%) Query: 925 VLTYVNGKIEDLGA-MSTVLADNRRHSIVTLDQGKLDRILAEHQPGAKISVEFNNLSEVQ 983 V V+GK + A +S+V+ + R + +++D K+ L ++Q +++ EV Sbjct: 198 VKVIVDGKEQGESATLSSVVVNGRVVTTISVDNEKVAEQLQQNQIKT-LTLPVEGSREVV 256 Query: 984 TVELNGXXXXXXXXXXAAISVHTPKAAYTIPLQLIRWDTAAGQPGTNASAADVRIQIEIA 1043 ELNG A++ + T +A+YT+ + D AGQ G + D++IQ+ I+ Sbjct: 257 VGELNGQLVKLMENRAASLVIQTNQASYTLSASQLNIDQVAGQLGAGTALQDIKIQVTIS 316 Query: 1044 APDXXXXXXXXXXXXXXXXXFLAGPLDFSVKIVSGSQTSGLAGFSAYVQRSFSLPAGTDT 1103 +A P+ F V ++ + FS YV R+ ++P G D Sbjct: 317 V--MKDKQSVEQAAANSEADLIATPVQFEVTASYRGKSVTIDRFSNYVNRTIAIPDGVDP 374 Query: 1104 SR-ATGIVMEPDGTVRHVPTRFVLQNGEYAAVISSLTNSTYAIVSHPVEFKDMAGHWAQA 1162 S TG+VM DGT+ HVPT G Y A I+SLTNSTYA+V H F D+ HWA+A Sbjct: 375 SHITTGVVMAGDGTITHVPTVITQSEGHYYAQINSLTNSTYAVVWHSKTFADVTNHWAKA 434 Query: 1163 AVDDLGTRLVVNGSGNGLFLPDRGITRAEFAAVLVRGLGLQATGGTSP--FTDVSSSDWY 1220 ++DL +R+V+ G F PDR +TRAEF A+L+R LG+ A + F DV ++ WY Sbjct: 435 DINDLASRMVIQGVSADRFAPDRSVTRAEFTAILLRALGIHAPKDDTKVSFRDVGATAWY 494 Query: 1221 SSAVQTASRHQLITGFEDGSFRPDDAITREQAVTMLAQAMQLTGLASEVSSPPADLMKKF 1280 AV A + LITG+ DGSF P+ +I+R++A+ M+ ++ +TGL +S A L+ F Sbjct: 495 HDAVVNAVSYGLITGYSDGSFHPNASISRQEAIVMINRSSAITGLVQASASETAGLISPF 554 Query: 1281 TDADQASAWALDSIAASLQAGLITGRSGTGLAPQSHVTRAEVAVLLQRLLQKSGLI 1336 D +WAL ++A+ + G++ G +G L P+ +TRAE AV+++R+L +GLI Sbjct: 555 NDKKNIDSWALAAVASGAKQGIVKGTNGK-LLPKQPITRAESAVIMKRVLVAAGLI 609 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.127 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 7,098,483,057 Number of extensions: 284310598 Number of successful extensions: 699226 Number of sequences better than 1.0e-05: 1945 Number of HSP's gapped: 692263 Number of HSP's successfully gapped: 2763 Length of query: 1336 Length of database: 3,060,696,203 Length adjustment: 148 Effective length of query: 1188 Effective length of database: 1,666,385,983 Effective search space: 1979666547804 Effective search space used: 1979666547804 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 138 (57.8 bits)