BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0199.0005.p (1113 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZFV6.1 C0ZFV6_BREBN Putative uncharacterized protein 1230 0.0 B3KGW0.1 B3KGW0_9BACI Non-specific serine/threonine protein kina... 1212 0.0 B1D803.1 B1D803_9BACL Non-specific serine/threonine protein kina... 1138 0.0 B3ZDS8.1 B3ZDS8_BACCE Putative helicase 1104 0.0 B3YRS5.1 B3YRS5_BACCE Putative helicase 1104 0.0 >C0ZFV6.1 C0ZFV6_BREBN Putative uncharacterized protein Length = 1090 Score = 1230 bits (3182), Expect = 0.0, Method: Compositional matrix adjust. Identities = 621/1119 (55%), Positives = 794/1119 (70%), Gaps = 39/1119 (3%) Query: 1 VPERVIRLLCGKAAFERGSEDYEAGKVRLAAVENYEGLEYSKYQATVY-GREPYDITLTI 59 V ++I+ CG+ ++ERG Y +G V VE+++ E + + TV G+ Y +T+ + Sbjct: 5 VSHQMIKEWCGRLSYERGKTFYRSGNV---LVEHFQP-EPAWIRTTVNAGKNNYQVTIEL 60 Query: 60 DSDGDVNGKCSCPAYRNGGPFCKHIAAVLVA---ILYEEDGDGPLSAQGTTAGRNKPEVF 116 D G + CSCP + +C+HIAA L+ +L +E D S TT Sbjct: 61 DESG-MAAVCSCPTLASYDQYCQHIAASLLTMRDLLVDEHPDS-FSTSMTT--------- 109 Query: 117 TGKTGVLFPRDLPDRNTSGATAGPSSRHLVSSMLGLFENPRQRPSGAGAYVDIRTPLQVE 176 +G T P S+ L + GLF + R S +D RT L +E Sbjct: 110 ---------------KQAGMTDQPDSQ-LTEGLFGLFVDRPLRTSHHRVLLDSRTTLALE 153 Query: 177 VICRPFSYNFGSRLLGIELKVGPKRLYIVQKIRAFLERVHRGEPFEFSKHFVYDPALHSF 236 +IC+ Y F ++GIELK+GPKRLYIV+ IRAFLERV + + ++FS F YDP LH F Sbjct: 154 IICKIVRYGFRKSMIGIELKLGPKRLYIVKDIRAFLERVDKQQVYQFSSQFTYDPNLHRF 213 Query: 237 TKEDNAVLLKLIEILLNERVYRDNIGPYSSYSINLGGERLLAIPPFFWESLLPALAASPS 296 E A+L +L++I E++YR+ ++GGER+L +PPF WE L ++PS Sbjct: 214 LPEHEAILRELLQIYRTEKLYRETASDRYQEQKHVGGERILLVPPFTWERFFALLLSAPS 273 Query: 297 VYLQIGDTLTPGIQIADELLPLSFQFDQADSDGYHLDIQGLAQITVMEDYGLVLSEGRLM 356 V++Q + + P D+ PL F+FDQ +D Y L++QG ITV+E YGL+L +G+ Sbjct: 274 VHIQDHEQIYPTFVCLDDRPPLHFEFDQTKTDQYQLEVQGFKHITVLEAYGLLLVDGKWH 333 Query: 357 KLPVQECRRLSELKKMLAKSRTSGIDIAPGQMEPFMDKVIPGLKKLGQVHIADSIADRIV 416 +LP ++C L+ELK +L + I I ++EPFM +++P L KLG VHIA ++++R+V Sbjct: 334 RLPKEQCHSLAELKHLLESHSSERIHIPAEKIEPFMVQIVPALMKLGNVHIAKAVSERVV 393 Query: 417 QTQLQAXXXXXXXXXXXXAGLEFQYGTIVINPLD--EQARERGHEVILMRDGEAERRILE 474 Q QL+A AGLEFQYG IVINPL+ E +RG E+ILMRDGE ER+ILE Sbjct: 394 QFQLKAKLYLDRVRDRLLAGLEFQYGDIVINPLEGHEGGGQRGSELILMRDGEKERQILE 453 Query: 475 LMAHESFARTESGYIMSDEEGEYDFLYHTIPLLEPLLQVYATTAVKERLVTGMYTPKASL 534 LM +F RTE GY + DEE EYDFLYH +P LE LL+VYATT+VK R+ PK + Sbjct: 454 LMEESAFTRTEEGYFLDDEEAEYDFLYHVVPKLEKLLKVYATTSVKIRIQPLHIPPKVKV 513 Query: 535 TWNEKTDWLDFKFAMDGIPESEIVLVLKSLQEKRKYYRLPDGALLPLETAELQEIIALMN 594 NE+T+WLDF+F MDGIPESEI V++S++EKR+Y+RL +GALLPLET E ++I ++ Sbjct: 514 DVNERTNWLDFRFDMDGIPESEIRGVIQSVEEKRRYHRLSNGALLPLETKEFEQINRFLD 573 Query: 595 ELGVHAADIKSPEFSLPLVRGLHMNAEAGKGGTDAVSIGRSFRRLLANMHSPENLDFPVP 654 E+G+ AD F LP + GL + +G +V +G+S R+ L NM +P+NLDFPVP Sbjct: 574 EMGMQYADQMGSGFQLPAIYGLRLMDIPMQG--QSVQLGKSLRQFLENMRNPDNLDFPVP 631 Query: 655 ETLAPVLRDYQQYGFQWMKTLAHYRFGGILADDMGLGKTLQSIAFLLSELEDIRQTGQPA 714 E+L LRDYQ+YG+QWMKTLAHY FGGILADDMGLGKTLQS+ FLLS L +IR+ PA Sbjct: 632 ESLQGTLRDYQKYGYQWMKTLAHYGFGGILADDMGLGKTLQSVTFLLSVLPEIREQKLPA 691 Query: 715 LIVAPASLLYNWQNELKRFAPQISAAIVDGNLAVRSKTVRNAAGCDVLITSYPLLRRDVE 774 +IVAPASLLYNW NE+K+FAP I + IVDG R++ V + DVLITSYPLLRRD Sbjct: 692 IIVAPASLLYNWHNEIKKFAPMIRSVIVDGTKEERTQIVNEQSEIDVLITSYPLLRRDHA 751 Query: 775 LYVKRSFHTLILDEAQMIKNHATQTAQAVKALQARYRFALTGTPVENALEDLWSIYGVVF 834 + + SFHTLILDEAQ KN+ TQTAQ VK ++A++RFALTGTPVEN +E+LWSIY VF Sbjct: 752 QFEEHSFHTLILDEAQTFKNYVTQTAQTVKRIKAKHRFALTGTPVENRIEELWSIYDAVF 811 Query: 835 PGLFPGKKAFHDLPRETVAKRIRPFLLRRLKSDVLKELPDKIETLQASELLPEQKKLYVA 894 P LFP +K F DLPRET+AKR RPFLLRRLKS+VLKELP KIETLQ+++LLPEQKKLYVA Sbjct: 812 PELFPARKEFLDLPRETIAKRTRPFLLRRLKSEVLKELPPKIETLQSAKLLPEQKKLYVA 871 Query: 895 YLARLRKEALKHLDSDGFGKGRIKVLAGLTRLRQLCCHPALFVDGYAGGSGKFEQLLEII 954 YLA+L++E +KHL + GF K RIK+LAGLTRLRQ+CCHPALFV Y GGS K EQL EI+ Sbjct: 872 YLAQLQQETVKHLYNKGFQKNRIKILAGLTRLRQICCHPALFVKEYDGGSAKLEQLFEIL 931 Query: 955 GECRSSGKRVLIFSQFTEMLGMISRELGLLAVPHFYLDGHTPSFKRVELCGRFNEGERDL 1014 GEC+++GKRVL+FSQFTEMLGMI RELG VP FYLDG TP +R++LC RFNEGERDL Sbjct: 932 GECKNAGKRVLLFSQFTEMLGMIGRELGYHGVPFFYLDGQTPVAERLDLCNRFNEGERDL 991 Query: 1015 FLISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQKKVVQVIRLIAQGTVE 1074 FL+SLKAGGTGLN+TGADTVILYDLWWNPAVEQQAADRAHRIGQK VVQVIRL+A+GTVE Sbjct: 992 FLMSLKAGGTGLNVTGADTVILYDLWWNPAVEQQAADRAHRIGQKNVVQVIRLVAEGTVE 1051 Query: 1075 DKMYELQQKKKNLIDEVIEPGQEALSALSEQDIREILMI 1113 +KMYELQQKKKNLI+E+I PGQEA+S+L+EQ+IRE+LMI Sbjct: 1052 EKMYELQQKKKNLIEEIITPGQEAISSLTEQEIRELLMI 1090 >B3KGW0.1 B3KGW0_9BACI Non-specific serine/threonine protein kinase EC=2.7.11.1 Length = 1111 Score = 1212 bits (3137), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/1118 (55%), Positives = 797/1118 (71%), Gaps = 22/1118 (1%) Query: 3 ERVIRLLCGKAAFERGSEDYEAGKVRLAAVENYEGLEYSKYQATVYGREPYDITLTIDSD 62 ERVI+LLCGK +++RG Y G V + + + KY+A V +E IDS+ Sbjct: 7 ERVIKLLCGKTSYDRGGVLYRDGYVSMLK----QDPDARKYEAEVKDQESGIAYAEIDSN 62 Query: 63 GDVNGKCSCPAYRNGGPFCKHIAAVLVAIL-YEEDGDGPL----SAQGTTAGRNKPEVFT 117 GDV +CSC Y C+HIAA+L+ I E+ + P+ S +A N E Sbjct: 63 GDVYTECSCIDYGFSRKRCRHIAALLLNIRDIEQTVEAPMRPFPSLLHPSANVNMEE--- 119 Query: 118 GKTGVLFPRDLPDRNTSGATAGPSSRH--LVSSMLGLFENPRQRPSGAGAYVDIRTPLQV 175 G L PR P+ G ++ R L S +LGLF R + A + D R L++ Sbjct: 120 ---GQLTPRHSPE---YGRSSNERERDALLSSQLLGLFSYSGGRRAAATSRFDTREVLEM 173 Query: 176 EVICRPFSYNFGSRLLGIELKVGPKRLYIVQKIRAFLERVHRGEPFEFSKHFVYDPALHS 235 E I + + Y L G+EL+VG KRLYIVQ+IR FL V RG F+K+F YDP +HS Sbjct: 174 ECIFKLYPYGDRKYLFGVELRVGNKRLYIVQRIREFLACVKRGAACVFTKNFTYDPEVHS 233 Query: 236 FTKEDNAVLLKLIEILLNERVYRDNIGPYSSYSINLGGERLLAIPPFFWESLLPALAASP 295 F KED+A+L +LI I +E +Y+ ++ Y+ G+R+L IPP FW + AL +S Sbjct: 234 FKKEDDALLQELIRISDHESMYQQSVNIYAPLGKKGNGDRMLIIPPAFWPQVREALGSSV 293 Query: 296 SVYLQIGDTLTPGIQIADELLPLSFQFDQADSDGYHLDIQGLAQITVMEDYGLVLSEGRL 355 L + +T ++ A E +PL F+FD+A D Y + I GL ++TV+E YG+V+++GRL Sbjct: 294 RPLLSMDGIMTDKLEFAQEPIPLQFEFDEAADDHYLMKIDGLERMTVLEGYGVVIADGRL 353 Query: 356 MKLPVQECRRLSELKKMLAKSRTSGIDIAPGQMEPFMDKVIPGLKKLGQVHIADSIADRI 415 ++L + C+RL+E+K +L S T I I P ME M++V+PGL KLG VH+A +++DRI Sbjct: 354 IQLEMDACKRLAEMKLLLEPSNTPHIRIQPEMMESIMERVVPGLMKLGSVHVAQTVSDRI 413 Query: 416 VQTQLQAXXXXXXXXXXXXAGLEFQYGTIVINPLDEQARERGHEVILMRDGEAERRILEL 475 V+T L+A AGLEFQYG I+INPL+ +R IL+RDGE E+RILEL Sbjct: 414 VKTPLKAKLFLDRVRGRLLAGLEFQYGDIIINPLEGHRAKRSSSSILVRDGETEQRILEL 473 Query: 476 MAHESFARTESGYIMSDEEGEYDFLYHTIPLLEPLLQVYATTAVKERLVTGMYTPKASLT 535 M + SFART+ G+ M+DE+ EY+FLYHTIP LE LL VYATTAVKER++T K + Sbjct: 474 MENASFARTDGGFFMNDEDAEYEFLYHTIPRLEKLLVVYATTAVKERVLTEPMGAKVRVE 533 Query: 536 WNEKTDWLDFKFAMDGIPESEIVLVLKSLQEKRKYYRLPDGALLPLETAELQEIIALMNE 595 +E+TDWL+ KF M+GI E+EI ++KSL+EKRKY+RL +GALLPLE+AE Q ++ALMN Sbjct: 534 VDERTDWLELKFDMEGIREAEIREIVKSLEEKRKYHRLRNGALLPLESAEFQAMVALMNR 593 Query: 596 LGVHAADIKSPEFSLPLVRGLHMNAEAGKGGTDAVSIGRSFRRLLANMHSPENLDFPVPE 655 +G + + F LP V+GL + G + V +GRS RR+L N+ +P++LDF VP Sbjct: 594 VGPWLYEDEGTRFKLPAVQGLQLLDWEDSGSS--VQLGRSLRRMLQNVKNPDHLDFAVPA 651 Query: 656 TLAPVLRDYQQYGFQWMKTLAHYRFGGILADDMGLGKTLQSIAFLLSELEDIRQTGQPAL 715 +L VLRDYQ++GFQWMKT+AHYRFGGILADDMGLGKT+QSIAF+LS L +IR+ +PAL Sbjct: 652 SLETVLRDYQKFGFQWMKTMAHYRFGGILADDMGLGKTIQSIAFILSLLPEIRERKEPAL 711 Query: 716 IVAPASLLYNWQNELKRFAPQISAAIVDGNLAVRSKTVRNAAGCDVLITSYPLLRRDVEL 775 IVAPASLLYNW NELK+FAP+I A I DG L+ R+K ++N DV+ITSYPLLRRD++ Sbjct: 712 IVAPASLLYNWFNELKKFAPEIKAVIADGTLSERAKVIQNIGKADVVITSYPLLRRDIQR 771 Query: 776 YVKRSFHTLILDEAQMIKNHATQTAQAVKALQARYRFALTGTPVENALEDLWSIYGVVFP 835 Y K F TLILDEAQ KN+ATQTAQ VK L ARYRFALTGTPVEN LE+LWSIY VFP Sbjct: 772 YAKLPFLTLILDEAQAFKNYATQTAQVVKTLHARYRFALTGTPVENRLEELWSIYDAVFP 831 Query: 836 GLFPGKKAFHDLPRETVAKRIRPFLLRRLKSDVLKELPDKIETLQASELLPEQKKLYVAY 895 LF +KAFH+LP+E V KR+RPFLLRRLKSDVLKELP+KIET+QAS LL EQKKLY AY Sbjct: 832 ALFGDRKAFHELPKEAVVKRVRPFLLRRLKSDVLKELPEKIETIQASGLLIEQKKLYTAY 891 Query: 896 LARLRKEALKHLDSDGFGKGRIKVLAGLTRLRQLCCHPALFVDGYAGGSGKFEQLLEIIG 955 LA+LR+E LKHL DGF K RI++LAG+TRLRQ+CCHPALFV+GY GGS K EQLLE I Sbjct: 892 LAKLRQETLKHLAQDGFQKNRIRILAGITRLRQICCHPALFVEGYEGGSAKLEQLLETIE 951 Query: 956 ECRSSGKRVLIFSQFTEMLGMISRELGLLAVPHFYLDGHTPSFKRVELCGRFNEGERDLF 1015 ECR +G+R+L+FSQFT ML +I+ ELG +P FYLDG TP +RVELC RFNEGER++F Sbjct: 952 ECRLAGRRMLVFSQFTGMLNLIAGELGYRGIPFFYLDGQTPGSERVELCERFNEGEREVF 1011 Query: 1016 LISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQKKVVQVIRLIAQGTVED 1075 LISLKAGGTGLNLTGADTVILYDLWWNPAVEQQA DRAHRIGQKKVVQVIR ++Q T+ED Sbjct: 1012 LISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAMDRAHRIGQKKVVQVIRFVSQDTIED 1071 Query: 1076 KMYELQQKKKNLIDEVIEPGQEALSALSEQDIREILMI 1113 KM LQQKKK+LI+E+++PG+E+LS+ SE +IRE+L + Sbjct: 1072 KMVALQQKKKDLIEELVQPGEESLSSWSEAEIRELLAL 1109 >B1D803.1 B1D803_9BACL Non-specific serine/threonine protein kinase EC=2.7.11.1 Length = 1088 Score = 1138 bits (2943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/1114 (52%), Positives = 761/1114 (68%), Gaps = 48/1114 (4%) Query: 6 IRLLCGKAAFERGSEDYEAGKVRLAAVENYEGLEYSKYQATVYGREPYDITLTIDS-DGD 64 +R+LCG+ AFE G ++AG V + + + +A V R D+ +T G+ Sbjct: 10 VRVLCGRFAFEEGEAIWQAGGVTILRYDPDKPF----CEANV--RTNRDLIVTAARIRGE 63 Query: 65 VNGKCSCPAYRNGGPFCKHIAAVLVAILYEEDGDGPLSAQGTTAGRNKPEVFTGKTGVLF 124 + C+CP + +C+H+AA+L+ +L + Sbjct: 64 IVATCTCPDFDPEDKYCEHVAAMLLHLLELPEE--------------------------- 96 Query: 125 PRDLPDRNTSGATAGPSSRHLVSSMLGLFENPRQRPS---GAGAYV-DIRTPLQVEVICR 180 + A S + L SS+L LF + + S G+ YV D R P++++ C Sbjct: 97 -------ALNLARISASDQLLSSSILDLFGSRERGQSTLLGSTRYVRDTRIPVEIQFTCV 149 Query: 181 PFSYNFGSRLLGIELKVGPKRLYIVQKIRAFLERVHRGEPFEFSKHFVYDPALHSFTKED 240 FS + + +GIEL+ G RLY+V IRAF+E + FSK F ++PA H F ED Sbjct: 150 IFSSGYRNYRIGIELRTGLGRLYVVPDIRAFIEGIALNVTRTFSKQFTFNPADHRFRNED 209 Query: 241 NAVLLKLIEILLNERVYRDNIGPYSSYSINLGGERLLAIPPFFWESLLPALAASPSVYLQ 300 A+L +L I NE +Y++ P S + R+L IPP W ++LP LAA PSV + Sbjct: 210 YALLGELARISKNEALYQEEAAPLSGKTRGKQNNRMLMIPPADWPTVLPLLAACPSVLID 269 Query: 301 IGDTLTPGIQIADELLPLSFQFDQADSDGYHLDIQGLAQITVMEDYGLVLSEGRLMKLPV 360 T+T G+QI DE P+ F+F + D G+ L+++GL QITV+ Y +VLSEGR+ +LP Sbjct: 270 QEGTVTAGLQINDEASPVRFEFGEQDESGFQLNVEGLDQITVLTAYNMVLSEGRMKQLPE 329 Query: 361 QECRRLSELKKMLAKSRTSGIDIAPGQMEPFMDKVIPGLKKLGQVHIADSIADRIVQTQL 420 C++L++ K ML S + I+P Q+EPFM+KV+P L KLGQV + S++++IVQT L Sbjct: 330 ASCKQLADFKNMLDASHRQHVVISPEQIEPFMEKVVPELMKLGQVQVTRSVSEKIVQTPL 389 Query: 421 QAXXXXXXXXXXXXAGLEFQYGTIVINPLDEQARERGHEVILMRDGEAERRILELMAHES 480 QA A LEFQYG I INPL + + IL+RDG+ E RIL++M Sbjct: 390 QARLYLDRIRDRLLAELEFQYGDIKINPLAAHTDYKTEDRILLRDGDRENRILDIMEQSG 449 Query: 481 FARTESGYIMSDEEGEYDFLYHTIPLLEPLLQVYATTAVKERLVTGMYTPKASLTWNEKT 540 F TE GY M DEE EY+FL HTIP LE LLQV+AT+AVK R+V P + +E+T Sbjct: 450 FITTELGYYMQDEESEYEFLRHTIPKLEKLLQVHATSAVKTRIVVPNTPPLLKVEVDERT 509 Query: 541 DWLDFKFAMDGIPESEIVLVLKSLQEKRKYYRLPDGALLPLETAELQEIIALMNELGVHA 600 +WL+FKF + GI + EI VL+S+ EKR+Y+RL +GALLPLE E + I ++NE G Sbjct: 510 NWLEFKFELTGISDDEIRSVLRSIVEKRRYHRLQEGALLPLEGKEYEAITRIINETGFLR 569 Query: 601 ADIKSPEFSLPLVRGLHMNAEAGKGGTDAVSIGRSFRRLLANMHSPENLDFPVPETLAPV 660 D+ F +P+ RGLH+ +G T + +G+S R+LLA++ +P++L+F VP TL V Sbjct: 570 TDLNQSVFRIPVARGLHLGDFENEGRT--IQLGKSLRKLLAHIRNPDHLEFEVPATLRHV 627 Query: 661 LRDYQQYGFQWMKTLAHYRFGGILADDMGLGKTLQSIAFLLSELEDIRQTGQPALIVAPA 720 LRDYQ YGFQWMKTLAHYRFGGILADDMGLGKT+QSIAFLLS L +IR+ QPA+IV PA Sbjct: 628 LRDYQIYGFQWMKTLAHYRFGGILADDMGLGKTIQSIAFLLSCLPEIREMEQPAIIVTPA 687 Query: 721 SLLYNWQNELKRFAPQISAAIVDGNLAVRSKTVRNAAGCDVLITSYPLLRRDVELYVKRS 780 SL+YNW +ELK+FAP+I I DG R+ +R+ G DV+ITSYPLLRRD++LYV+R Sbjct: 688 SLMYNWLSELKKFAPEIQVVIADGTRPERAAKLRSLKGIDVVITSYPLLRRDIDLYVQRF 747 Query: 781 FHTLILDEAQMIKNHATQTAQAVKALQARYRFALTGTPVENALEDLWSIYGVVFPGLFPG 840 +HT+ILDEAQ KNH TQTAQAVKALQA+ RF LTGTP+EN +E+LWSI+G VFP LFP Sbjct: 748 YHTVILDEAQAFKNHTTQTAQAVKALQAKNRFGLTGTPLENRVEELWSIFGAVFPELFPA 807 Query: 841 KKAFHDLPRETVAKRIRPFLLRRLKSDVLKELPDKIETLQASELLPEQKKLYVAYLARLR 900 +K F DLPRE +A+R RPFLLRRLKSDVLKELP+KIETLQA+ LLPEQKKLYV+YLA+LR Sbjct: 808 RKVFSDLPRENIARRARPFLLRRLKSDVLKELPEKIETLQATSLLPEQKKLYVSYLAKLR 867 Query: 901 KEALKHLDSD-GFGKGRIKVLAGLTRLRQLCCHPALFVDGYAGGSGKFEQLLEIIGECRS 959 E +KHLD+D + RIK+LAGLTRLRQ+CCHPALF+ Y G S KFEQL EI+ ECRS Sbjct: 868 TETVKHLDNDRSLQQNRIKILAGLTRLRQICCHPALFITDYEGSSAKFEQLFEIVEECRS 927 Query: 960 SGKRVLIFSQFTEMLGMISRELGLLAVPHFYLDGHTPSFKRVELCGRFNEGERDLFLISL 1019 +GKR+LIFSQFTEML +IS+EL + +FYLDG T + +RVELC RFN+GE+D+FL SL Sbjct: 928 TGKRMLIFSQFTEMLSLISKELVRQGISYFYLDGSTKASERVELCNRFNDGEKDIFLASL 987 Query: 1020 KAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQKKVVQVIRLIAQGTVEDKMYE 1079 KAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQ KVVQVIRL A GTVEDKMY Sbjct: 988 KAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQTKVVQVIRLAAHGTVEDKMYA 1047 Query: 1080 LQQKKKNLIDEVIEPGQEALSALSEQDIREILMI 1113 LQ++KKN+ID++I PG+E LS+L++ DIREIL I Sbjct: 1048 LQERKKNMIDDIIRPGEEQLSSLTDADIREILAI 1081 >B3ZDS8.1 B3ZDS8_BACCE Putative helicase Length = 1064 Score = 1104 bits (2856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 562/1110 (50%), Positives = 750/1110 (67%), Gaps = 55/1110 (4%) Query: 5 VIRLLCGKAAFERGSEDYEAGKVRLAAVENYEGLEYSKYQATVYGREPYDITLTIDSDGD 64 +I+ +CG+ +++RG Y++ KV + N+ +ATV G E + +T+ GD Sbjct: 9 IIKEVCGETSYKRGEAYYKSNKV----IVNHYDETKEICEATVKGNEDFHVTVEKAKKGD 64 Query: 65 VNGKCSCPAYRNGGPFCKHIAAVLVAILYEEDGDGPLSAQGTTAGRNKPEVFTGKTGVLF 124 V +CSCP+ + +C+H+AAVL+ I Y + G G+ + RN Sbjct: 65 VVARCSCPSLASFQTYCQHVAAVLIQINYNQQTGG----MGSVSSRN------------- 107 Query: 125 PRDLPDRNTSGATAGPSSRHLVSSMLGLFENPRQRPSGAGAYVDIRTPLQVEVICRPFSY 184 D+ T+G M LF + RP D R L V IC P + Sbjct: 108 -----DQLTNG-------------MFQLFADKPLRPKSKQHRFDTREILDVAFICSPVAT 149 Query: 185 NFGSRLLGIELKVGPKRLYIVQKIRAFLERVHRGEPFEFSKHFVYDPALHSFTKEDNAVL 244 G LLGI+LK+ + Y++ IR FL +V + E F +S F Y P +HSF +E + ++ Sbjct: 150 KSGGALLGIQLKLA--KTYLINHIREFLSKVEKRETFHYSNEFTYTPDIHSFKQETDVII 207 Query: 245 LKLIEILLNERVYRDNIGPYSSYSINLGGERLLAIPPFFWESLLPALAASPSVYLQIGDT 304 LI+I NE++Y D + ++ E ++ IPP W +L AL+ + V L+ + Sbjct: 208 QHLIKIYHNEKMYEDALEVHAKQD-----ESMIFIPPASWNDMLSALSRAEYVQLKQNEQ 262 Query: 305 LTPGIQIADELLPLSFQFDQADSDGYHLDIQGLAQITVMEDYGLVLSEGRLMKLPVQECR 364 L G+QI+ LLPL F+F + ++ G+ L I GL ++ VME Y L +G+L LP+++C Sbjct: 263 LFHGLQISKGLLPLHFEFTKGNNGGFTLHIAGLNRVRVMEMYNNALYDGKLYHLPMEDCM 322 Query: 365 RLSELKKMLAKSRTSGIDIAPGQMEPFMDKVIPGLKKLGQVHIADSIADRIVQTQLQAXX 424 RL EL+KM+++S ++ I +ME F+ KV+PGL KLG V I + I+DR+ L+A Sbjct: 323 RLIELQKMMSRSNSNQFYIPENKMEHFVAKVVPGLMKLGTVRIDEGISDRVETPSLKAKL 382 Query: 425 XXXXXXXXXXAGLEFQYGTIVINPLDEQARERGHEVILMRDGEAERRILELMAHESFART 484 AGLEF YG +VINPL+E G + RD + E+ IL++M+ +FA+T Sbjct: 383 YLDRVKNRLLAGLEFHYGNVVINPLEED----GQPSVFNRDEKKEKEILDIMSESAFAKT 438 Query: 485 ESGYIMSDEEGEYDFLYHTIPLLEPLLQVYATTAVKERLVTGMYTPKASLTWNEKTDWLD 544 E GY M +EE EY+FLYH +P L+ L+ VYATTA+K R+ G P + E+ DWL Sbjct: 439 EGGYFMHNEEAEYNFLYHIVPTLKGLVDVYATTAIKLRIHKGDTAPLIRVRRKERIDWLS 498 Query: 545 FKFAMDGIPESEIVLVLKSLQEKRKYYRLPDGALLPLETAELQEIIALMNELGVHAADIK 604 F+F + GIPE+EI VL +L+EKRKYYRL +G+LL LE+ E EI + E G+ + Sbjct: 499 FRFDIKGIPEAEIKGVLVALEEKRKYYRLANGSLLSLESKEFNEINQFVKESGIRKEFLH 558 Query: 605 SPEFSLPLVRGLH-MNAEAGKGGTDAVSIGRSFRRLLANMHSPENLDFPVPETLAPVLRD 663 E ++PL+R + MN G + +S+ S + L+ ++ +P+ L F VP+TL V+R+ Sbjct: 559 GEEVNVPLIRSVKWMN---GLHEGNVLSLDESVQDLVESIQNPKKLKFTVPQTLRAVMRE 615 Query: 664 YQQYGFQWMKTLAHYRFGGILADDMGLGKTLQSIAFLLSELEDIRQTGQPALIVAPASLL 723 YQ YGF+WMKTLA+YRFGGILADDMGLGKTLQSIA++ S L +IR+ P L+V+P+SL+ Sbjct: 616 YQVYGFEWMKTLAYYRFGGILADDMGLGKTLQSIAYIDSVLPEIREKKLPILVVSPSSLV 675 Query: 724 YNWQNELKRFAPQISAAIVDGNLAVRSKTVRNAAGCDVLITSYPLLRRDVELYVKRSFHT 783 YNW +ELK+FAP I A I DGN A R K +++ A DV+ITSYPLLRRD+ Y R FHT Sbjct: 676 YNWLSELKKFAPHIRAVIADGNQAERRKILKDVAEFDVVITSYPLLRRDIRSYA-RPFHT 734 Query: 784 LILDEAQMIKNHATQTAQAVKALQARYRFALTGTPVENALEDLWSIYGVVFPGLFPGKKA 843 L LDEAQ KN TQTA+AVK +QA YRF LTGTPVEN+LE+LWSI+ VVFP L PG+K Sbjct: 735 LFLDEAQAFKNPTTQTARAVKTIQAEYRFGLTGTPVENSLEELWSIFHVVFPELLPGRKE 794 Query: 844 FHDLPRETVAKRIRPFLLRRLKSDVLKELPDKIETLQASELLPEQKKLYVAYLARLRKEA 903 F DL RE +AKR++PF+LRRLK DVLKELPDKIE LQ+SELLP+QK+LY AYLA+LR+E Sbjct: 795 FGDLRREDIAKRVKPFVLRRLKEDVLKELPDKIEHLQSSELLPDQKRLYAAYLAKLREET 854 Query: 904 LKHLDSDGFGKGRIKVLAGLTRLRQLCCHPALFVDGYAGGSGKFEQLLEIIGECRSSGKR 963 LKHLD D K +I++LAGLTRLRQ+CCHPALFVD Y G S KFEQLL+I+ ECRS+GKR Sbjct: 855 LKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYKGSSAKFEQLLDILEECRSTGKR 914 Query: 964 VLIFSQFTEMLGMISRELGLLAVPHFYLDGHTPSFKRVELCGRFNEGERDLFLISLKAGG 1023 +LIFSQFT+ML +I REL A+P+FYLDG+TPS +RVELC RFNEGE DLFLISLKAGG Sbjct: 915 ILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDLFLISLKAGG 974 Query: 1024 TGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQKKVVQVIRLIAQGTVEDKMYELQQK 1083 TGLNLTGADTVILYDLWWNPAVEQQAADRA+R+GQK VQVI+L+A GT+E+KMYELQ+ Sbjct: 975 TGLNLTGADTVILYDLWWNPAVEQQAADRAYRMGQKNTVQVIKLVAHGTIEEKMYELQES 1034 Query: 1084 KKNLIDEVIEPGQEALSALSEQDIREILMI 1113 KKNLI EVIEPG+E LS+++E++IR+ILMI Sbjct: 1035 KKNLIAEVIEPGEEKLSSITEEEIRDILMI 1064 >B3YRS5.1 B3YRS5_BACCE Putative helicase Length = 1064 Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/1110 (50%), Positives = 750/1110 (67%), Gaps = 55/1110 (4%) Query: 5 VIRLLCGKAAFERGSEDYEAGKVRLAAVENYEGLEYSKYQATVYGREPYDITLTIDSDGD 64 +I+ +CG+ +++RG Y++ KV + NY +ATV G E + +T+ GD Sbjct: 9 IIKEVCGETSYKRGEAYYKSNKV----IVNYYDETKEICEATVKGNEDFHVTVEKAKKGD 64 Query: 65 VNGKCSCPAYRNGGPFCKHIAAVLVAILYEEDGDGPLSAQGTTAGRNKPEVFTGKTGVLF 124 V +CSCP+ + +C+H+AAVL+ I Y + G G+ + RN Sbjct: 65 VVARCSCPSLASFQTYCQHVAAVLIQINYNQQTGG----MGSVSSRN------------- 107 Query: 125 PRDLPDRNTSGATAGPSSRHLVSSMLGLFENPRQRPSGAGAYVDIRTPLQVEVICRPFSY 184 D+ T+G M LF + RP D R L V IC P + Sbjct: 108 -----DQLTNG-------------MFQLFADKPLRPKSKQHRFDTREILDVAFICSPVAT 149 Query: 185 NFGSRLLGIELKVGPKRLYIVQKIRAFLERVHRGEPFEFSKHFVYDPALHSFTKEDNAVL 244 G LLGI+LK+ + Y++ IR FL +V + E F +S F Y P +HSF +E + ++ Sbjct: 150 KSGGALLGIQLKLA--KTYLINHIREFLSKVEKRETFHYSNEFTYTPDIHSFKQETDVII 207 Query: 245 LKLIEILLNERVYRDNIGPYSSYSINLGGERLLAIPPFFWESLLPALAASPSVYLQIGDT 304 LI+I NE++Y D + ++ E ++ IPP W +L AL+ + V L+ + Sbjct: 208 QHLIKIYHNEKMYEDALEVHAKQD-----ESMIFIPPASWNDMLSALSRAEYVQLKQNEQ 262 Query: 305 LTPGIQIADELLPLSFQFDQADSDGYHLDIQGLAQITVMEDYGLVLSEGRLMKLPVQECR 364 L G+QI+ LLPL F+F + ++ G+ L I GL ++ VME Y L +G+L LP+++C Sbjct: 263 LFHGLQISKGLLPLHFEFTKGNNGGFTLHIAGLNRVRVMEMYNNALYDGKLYHLPMEDCM 322 Query: 365 RLSELKKMLAKSRTSGIDIAPGQMEPFMDKVIPGLKKLGQVHIADSIADRIVQTQLQAXX 424 RL EL+KM+++S ++ I +ME F+ KV+PGL KLG V I + I+DR+ L+A Sbjct: 323 RLIELQKMMSRSNSNQFYIPENKMEHFVAKVVPGLMKLGTVRIDEGISDRVETPSLKAKL 382 Query: 425 XXXXXXXXXXAGLEFQYGTIVINPLDEQARERGHEVILMRDGEAERRILELMAHESFART 484 AGLEF YG +VINPL+E G + RD + E+ IL++M+ +FA+T Sbjct: 383 YLDRVKNRLLAGLEFHYGNVVINPLEED----GQPSVFNRDEKKEKEILDIMSESAFAKT 438 Query: 485 ESGYIMSDEEGEYDFLYHTIPLLEPLLQVYATTAVKERLVTGMYTPKASLTWNEKTDWLD 544 E GY M +EE EY+FLYH +P L+ L+ +YATTA+K R+ G P + E+ DWL Sbjct: 439 EGGYFMHNEEAEYNFLYHIVPTLKGLVDIYATTAIKLRIHKGDTAPLIRVRRKERIDWLS 498 Query: 545 FKFAMDGIPESEIVLVLKSLQEKRKYYRLPDGALLPLETAELQEIIALMNELGVHAADIK 604 F+F + GIPE+EI VL +L+EKRKYYRL +G+LL LE+ E EI + E G+ + Sbjct: 499 FRFDIKGIPEAEIKGVLVALEEKRKYYRLANGSLLSLESKEFNEINQFVKESGIRKEFLH 558 Query: 605 SPEFSLPLVRGLH-MNAEAGKGGTDAVSIGRSFRRLLANMHSPENLDFPVPETLAPVLRD 663 E ++PL+R + MN G + +S+ S + L+ ++ +P+ L F VP+TL V+R+ Sbjct: 559 GEEVNVPLIRSVKWMN---GLHEGNVLSLDESVQDLVESIQNPKKLKFTVPQTLRAVMRE 615 Query: 664 YQQYGFQWMKTLAHYRFGGILADDMGLGKTLQSIAFLLSELEDIRQTGQPALIVAPASLL 723 YQ YGF+WMKTLA+YRFGGILADDMGLGKTLQSIA++ S L +IR+ P L+V+P+SL+ Sbjct: 616 YQVYGFEWMKTLAYYRFGGILADDMGLGKTLQSIAYIDSVLPEIREKKLPILVVSPSSLV 675 Query: 724 YNWQNELKRFAPQISAAIVDGNLAVRSKTVRNAAGCDVLITSYPLLRRDVELYVKRSFHT 783 YNW +ELK+FAP I A I DGN A R K +++ A DV+ITSYPLLRRD+ Y R FHT Sbjct: 676 YNWLSELKKFAPHIRAVIADGNQAERRKILKDVAEFDVVITSYPLLRRDIRSYA-RPFHT 734 Query: 784 LILDEAQMIKNHATQTAQAVKALQARYRFALTGTPVENALEDLWSIYGVVFPGLFPGKKA 843 L LDEAQ KN TQTA+AVK +QA YRF LTGTPVEN+LE+LWSI+ VVFP L PG+K Sbjct: 735 LFLDEAQAFKNPTTQTARAVKTIQAEYRFGLTGTPVENSLEELWSIFHVVFPELLPGRKE 794 Query: 844 FHDLPRETVAKRIRPFLLRRLKSDVLKELPDKIETLQASELLPEQKKLYVAYLARLRKEA 903 F DL RE +AKR++PF+LRRLK DVLKELPDKIE LQ+SELLP+QK+LY AYLA+LR+E Sbjct: 795 FGDLRREDIAKRVKPFVLRRLKEDVLKELPDKIEHLQSSELLPDQKRLYAAYLAKLREET 854 Query: 904 LKHLDSDGFGKGRIKVLAGLTRLRQLCCHPALFVDGYAGGSGKFEQLLEIIGECRSSGKR 963 LKHLD D K +I++LAGLTRLRQ+CCHPALFVD Y G S KFEQLL+I+ ECRS+GKR Sbjct: 855 LKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYKGSSAKFEQLLDILEECRSTGKR 914 Query: 964 VLIFSQFTEMLGMISRELGLLAVPHFYLDGHTPSFKRVELCGRFNEGERDLFLISLKAGG 1023 +LIFSQFT+ML +I REL A+P+FYLDG+TPS +RVELC RFNEGE DLFLISLKAGG Sbjct: 915 ILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDLFLISLKAGG 974 Query: 1024 TGLNLTGADTVILYDLWWNPAVEQQAADRAHRIGQKKVVQVIRLIAQGTVEDKMYELQQK 1083 TGLNLTGADTVILYDLWWNPAVEQQAADRA+R+GQK VQVI+L+A GT+E+KM+ELQ+ Sbjct: 975 TGLNLTGADTVILYDLWWNPAVEQQAADRAYRMGQKNTVQVIKLVAHGTIEEKMHELQES 1034 Query: 1084 KKNLIDEVIEPGQEALSALSEQDIREILMI 1113 KKNLI EVIEPG+E LS+++E++IR+ILMI Sbjct: 1035 KKNLIAEVIEPGEEKLSSITEEEIRDILMI 1064 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 6,628,929,897 Number of extensions: 291423773 Number of successful extensions: 728254 Number of sequences better than 1.0e-05: 4468 Number of HSP's gapped: 711879 Number of HSP's successfully gapped: 6089 Length of query: 1113 Length of database: 3,060,696,203 Length adjustment: 147 Effective length of query: 966 Effective length of database: 1,675,806,998 Effective search space: 1618829560068 Effective search space used: 1618829560068 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 137 (57.4 bits)