BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0199.0004.p
         (106 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2B889.1 Q2B889_9BACI Putative uncharacterized protein                 98   2e-19
B8FYI1.1 B8FYI1_DESHD Collagen triple helix repeat protein             89   1e-16
Q24PD9.1 Q24PD9_DESHY Putative uncharacterized protein                 89   1e-16
B8FX63.1 B8FX63_DESHD Putative uncharacterized protein                 87   3e-16
B8FYI0.1 B8FYI0_DESHD Collagen triple helix repeat protein             86   1e-15

>Q2B889.1 Q2B889_9BACI Putative uncharacterized protein
          Length = 118

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 67/100 (67%)

Query: 1   VLGVRPTQLLTVKVLCRNTVDAVSVTIQGYVLDATRTLYVNEVLHIAPNEVVTRNYFADL 60
           + G R    +TV    RN+++A ++ IQGY+L+ TRTLYV+EV+++ PN+V TRNYF ++
Sbjct: 14  ISGARQVTQITVIADNRNSMNASTILIQGYILNGTRTLYVSEVVNLGPNQVATRNYFGNV 73

Query: 61  DGFEFIFATGPAAAEAVGISLWGKQSSGQLVDAHRVVEHE 100
           D FE++F T   A  +  ISLWG+ ++G +    R+V  E
Sbjct: 74  DAFEYVFTTSGPAEASTQISLWGRSAAGAITFTQRLVSDE 113


>B8FYI1.1 B8FYI1_DESHD Collagen triple helix repeat protein
          Length = 380

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 11/104 (10%)

Query: 1   VLGVRPTQLLTVKVLCRNTVDAVS---VTIQGYVLDAT-RTLYVNEVLHIAPNEVVTRNY 56
           V G RP+    V V  R T D  S   V I GY  + + + +YV E++++ PNEV+TR Y
Sbjct: 14  VNGARPS----VSVALRITNDGDSTETVRITGYYPNGSFKEVYVLEIVNVNPNEVITREY 69

Query: 57  FADLDGFEFIFATGPAAAEAVGISLWGKQSSGQLVDAHRVVEHE 100
           FADLD FEF+F+T   ++E V IS+WGK + G LVDAHRV+  E
Sbjct: 70  FADLDAFEFVFST---SSETVAISVWGKDAEGNLVDAHRVLPAE 110


>Q24PD9.1 Q24PD9_DESHY Putative uncharacterized protein
          Length = 384

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 69/102 (67%), Gaps = 7/102 (6%)

Query: 1   VLGVRPTQLLTVKVLCRNTVDAV-SVTIQGYVLDAT-RTLYVNEVLHIAPNEVVTRNYFA 58
           V G RP+  ++V +   N  D+  +V I GY  + + + +YV E++++ PNEV+TR YFA
Sbjct: 24  VNGARPS--VSVAIRITNDGDSTETVRITGYYPNGSFKEVYVLEIVNVNPNEVITREYFA 81

Query: 59  DLDGFEFIFATGPAAAEAVGISLWGKQSSGQLVDAHRVVEHE 100
           DLD FEF+F+T   ++E V IS+WGK + G LVDAHRV+  E
Sbjct: 82  DLDAFEFVFST---SSEMVAISVWGKDAEGNLVDAHRVLPAE 120


>B8FX63.1 B8FX63_DESHD Putative uncharacterized protein
          Length = 116

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 7/102 (6%)

Query: 1   VLGVRPTQLLTVKVLCRNTVDAV-SVTIQGYVLDA-TRTLYVNEVLHIAPNEVVTRNYFA 58
           V GVRP+   ++ VL  N VD + SV ++GY L   T+ LYV E+ +I P EVV RNYFA
Sbjct: 14  VFGVRPSS--SLSVLVTNNVDTLESVLLRGYYLSGNTKILYVEELFNIGPAEVVLRNYFA 71

Query: 59  DLDGFEFIFATGPAAAEAVGISLWGKQSSGQLVDAHRVVEHE 100
           D DG EF F     +++ V  +LWGK + G L  AHRVV  E
Sbjct: 72  DFDGIEFQFI---VSSQGVNATLWGKDAEGNLQTAHRVVAQE 110


>B8FYI0.1 B8FYI0_DESHD Collagen triple helix repeat protein
          Length = 445

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 11/104 (10%)

Query: 1   VLGVRPTQLLTVKVLCRNTVDAVS---VTIQGYVLDAT-RTLYVNEVLHIAPNEVVTRNY 56
           V G RP+    V V  R T D  S   VTI GY L+ T + +YV E++ + PNEV+ R Y
Sbjct: 14  VDGARPS----VSVALRITNDGDSTETVTITGYYLNGTIKEVYVLELVTVNPNEVIIREY 69

Query: 57  FADLDGFEFIFATGPAAAEAVGISLWGKQSSGQLVDAHRVVEHE 100
           +A+LD FEF+F+T   ++E V IS+WGK + G LVDAHRV+  E
Sbjct: 70  YANLDAFEFVFST---SSETVVISVWGKDAEGNLVDAHRVLPAE 110


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 577,704,277
Number of extensions: 19126424
Number of successful extensions: 43092
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 43084
Number of HSP's successfully gapped: 10
Length of query: 106
Length of database: 3,060,696,203
Length adjustment: 74
Effective length of query: 32
Effective length of database: 2,363,541,093
Effective search space: 75633314976
Effective search space used: 75633314976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)