BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0199.0001.p (620 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLU0.1 B3KLU0_9BACI Arginyl-tRNA synthetase EC=6.1.1.19 827 0.0 Q5WFN7.1 Q5WFN7_BACSK Arginyl-tRNA synthetase EC=6.1.1.19 621 e-176 Q01U38.1 Q01U38_SOLUE Arginyl-tRNA synthetase EC=6.1.1.19 392 e-107 Q1IQ17.1 Q1IQ17_ACIBL Arginyl-tRNA synthetase EC=6.1.1.19 358 8e-97 C1F3Q4.1 C1F3Q4_ACIC5 Arginine--tRNA ligase EC=6.1.1.19 342 5e-92 >B3KLU0.1 B3KLU0_9BACI Arginyl-tRNA synthetase EC=6.1.1.19 Length = 620 Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/621 (62%), Positives = 478/621 (76%), Gaps = 2/621 (0%) Query: 1 MLSQWIKNQLEQCAANVINSLGEASAEPATVLLEQPPNADFGDYSSNIAMQLAKKLRKTP 60 MLS I + L+Q V + G E + +EQP + + GDY++N+AMQLAK LRK P Sbjct: 1 MLSHKIISSLQQAVNQVCEAYGTKLPESTPIRIEQPASMEHGDYATNVAMQLAKVLRKAP 60 Query: 61 MAVAGLITAEFQRIGAAGGIVQRIEIANPGFINLYINWQEWAGQTFKLPPGSGEKVIIEH 120 + +A LI AE ++ + +V+ EI PGF+NL I+W+ WA F+LPP + EK++IEH Sbjct: 61 LQIAELIQAELEQDASYKQLVRSTEIVAPGFMNLRIDWEYWASHQFELPPAANEKIVIEH 120 Query: 121 TSVNPNKSLHIGHLRNSCIGDALVRILRKTGHNVEVHNYVDDLGNQLADTVVGLLRVPLA 180 TS+NPNKS HIGHLRNSCIGD LVR++RK G+ VEVHNY+DDLGNQLADTVVGLL PL Sbjct: 121 TSINPNKSAHIGHLRNSCIGDTLVRLMRKLGYEVEVHNYIDDLGNQLADTVVGLLHTPLT 180 Query: 181 GEHVRFGDYCWDIYAAVNKKYAEQPEMIRQRTEILHELEEGHGNTAWLGQLAAERIVREH 240 EH RFGDYCWD+Y++ NK Y +P +++ RTE+LH LEEG+ N +W+G L AERIV+EH Sbjct: 181 KEHARFGDYCWDVYSSTNKAYEREPGLVQHRTEVLHALEEGNQNLSWIGLLVAERIVKEH 240 Query: 241 VAEMRSFGIEYDLLVWESSIVQAGFWSSASGLLKETDMFVQETEGKLAGCWILKQPAAEG 300 + EM+ FGIEYDLLVWESSIV+ GFW+SA LLK T +F QETEGKLAGCW+LKQ E Sbjct: 241 LEEMKQFGIEYDLLVWESSIVREGFWASAFELLKNTPLFHQETEGKLAGCWVLKQSGTEA 300 Query: 301 MENGSEDHQKDKVLVRSNGILTYTAKDIAYHLWKFGLLDKDFTYSEFNAGLWTTGLTGAP 360 + DH DKVLVRSNGILTYTAKDIAYHLWK+G+L DF Y +F +WTT G Sbjct: 301 GDEPESDHSIDKVLVRSNGILTYTAKDIAYHLWKYGVLSNDFVYKKFTDEVWTTSSHGEE 360 Query: 361 KSFGKADRVVNVIDYRQEYPQAMVKQALEVLGFTAQAEKLHHVSYGVVSLSPASAAGLGI 420 +++GKAD V+NVIDYRQ+YPQAMVKQALE LGF +AEKL HVSYGVVSLSP++AA LGI Sbjct: 361 RTYGKADMVINVIDYRQQYPQAMVKQALEGLGFQQEAEKLRHVSYGVVSLSPSAAADLGI 420 Query: 421 DTSDGKSSYAMSGRQGIGVKVADLVQLMESSIEAARSDVTGLSSRLIATAAIRYYLLRFN 480 DTSDGK+SYAMSGRQGIG+K+ +L+ + IE RSD GLSS IATA+IRYYLLRF Sbjct: 421 DTSDGKASYAMSGRQGIGIKITELIHQVAKVIEDTRSDKNGLSSHAIATASIRYYLLRFA 480 Query: 481 LGTEIVFDFKQATEISGNTGVYLMYTYARAGRVLSKAEDPAELTAVP-RFPAQLDTAELA 539 L TE+VFD KQATEISGNTGVYL+Y+YARA VL+KA + +VP RFPA ++ AE A Sbjct: 481 LQTEVVFDLKQATEISGNTGVYLLYSYARALSVLNKAREAEVTPSVPARFPA-MEKAEHA 539 Query: 540 LLRQLSTWEDTLYTAGRELTPNTICSYAHTLASLFNNFYSSCPILKGEESSIRFRLWLTL 599 LLR +STW DTLY+AGR+L+P+ IC++ + L SLFNNFYS+CPILK E ++FR+WLT Sbjct: 540 LLRHISTWYDTLYSAGRDLSPSAICNFTYELCSLFNNFYSACPILKAAEEMLQFRVWLTS 599 Query: 600 RFQSTLGEVLELLGLPKPERM 620 F++TLGE LE+LGLP P RM Sbjct: 600 LFKNTLGEALEVLGLPTPSRM 620 >Q5WFN7.1 Q5WFN7_BACSK Arginyl-tRNA synthetase EC=6.1.1.19 Length = 608 Score = 621 bits (1601), Expect = e-176, Method: Compositional matrix adjust. Identities = 307/594 (51%), Positives = 401/594 (67%), Gaps = 13/594 (2%) Query: 31 VLLEQPPNADFGDYSSNIAMQLAKKLRKTPMAVAGLITA--EFQRIGAAGGIVQRIEIAN 88 V LEQP GDYS+N+AM+LA+ RK P+ +A I E QR+ G IE+ Sbjct: 24 VELEQPAQLIHGDYSTNVAMKLARVARKNPLTIAETIKEKLERQRLPVTG-----IEVVK 78 Query: 89 PGFINLYINWQEW--AGQTFKLPPGSGEKVIIEHTSVNPNKSLHIGHLRNSCIGDALVRI 146 PGFIN +I W E G + SG K +IEHTS+NPNKS HIGHLRN+CIGD L R+ Sbjct: 79 PGFINFFIEWDEALADGDEPQALSSSG-KTVIEHTSINPNKSAHIGHLRNACIGDTLARL 137 Query: 147 LRKTGHNVEVHNYVDDLGNQLADTVVGLLRVPLAGEHVRFGDYCWDIYAAVNKKYAEQPE 206 L+ G NVEVHNYVDDLGNQLADT+ LL E RFGDYCW++Y+ +N+ Y + Sbjct: 138 LKTCGENVEVHNYVDDLGNQLADTLTALLHTNSDSEATRFGDYCWNVYSRLNEAYDKGTI 197 Query: 207 MIRQRTEILHELEEGHGNTAWLGQLAAERIVREHVAEMRSFGIEYDLLVWESSIVQAGFW 266 R E+LH+LEEG+ +TAWLG + A++I EH+ EM FGI+YDLLVWE IVQ GFW Sbjct: 198 STSIRDEVLHKLEEGNNSTAWLGYVVADKITSEHIEEMGQFGIDYDLLVWERDIVQKGFW 257 Query: 267 SSASGLLKETDMFVQETEGKLAGCWILKQPAAEGMENGSEDHQKDKVLVRSNGILTYTAK 326 +A LK++D+FV++ G AGCW+L+ E E GSE HQ DKVLVRSNG+LTYTAK Sbjct: 258 QTAFQKLKQSDVFVKQDSGPQAGCWVLRMSDNES-EEGSE-HQSDKVLVRSNGVLTYTAK 315 Query: 327 DIAYHLWKFGLLDKDFTYSEFNAGLWTTGLTGAPKSFGKADRVVNVIDYRQEYPQAMVKQ 386 DIAYH+WKFGLLD DF Y E GLWTT +G P +FG+ D V+NVIDYRQEYPQ +VKQ Sbjct: 316 DIAYHMWKFGLLDDDFAYKEKWPGLWTTASSGVPAAFGRGDAVINVIDYRQEYPQKVVKQ 375 Query: 387 ALEVLGFTAQAEKLHHVSYGVVSLSPASAAGLGIDTSDGKSSYAMSGRQGIGVKVADLVQ 446 AL +G+ +AE+L HV YGVVSLS +A+ LG++T DGKS YAMSGR+GIG+K+++L+Q Sbjct: 376 ALAAVGYEKEAERLFHVPYGVVSLSKQTASQLGLETEDGKSVYAMSGRKGIGIKISELIQ 435 Query: 447 LMESSIEAARSDVTGLSSRLIATAAIRYYLLRFNLGTEIVFDFKQATEISGNTGVYLMYT 506 M+ ++ A +D + + +A AAIRY +LR+N ++IVFD +AT+++GNTG+YL+YT Sbjct: 436 HMKEAVRAQSTDASEATVEALAFAAIRYNMLRYNTTSDIVFDLTEATQVTGNTGIYLIYT 495 Query: 507 YARAGRVLSKAEDPAELTAVPRFPAQLDTAELALLRQLSTWEDTLYTAGRELTPNTICSY 566 YARA +++KA+ F D AE ALL+ L+ W+ A PN IC++ Sbjct: 496 YARANSIITKAKQAGLSPEGATFKGAED-AERALLKHLAGWDTVKRKAAASFEPNLICTF 554 Query: 567 AHTLASLFNNFYSSCPILKGEESSIRFRLWLTLRFQSTLGEVLELLGLPKPERM 620 A LASL+N FYS CP+LK + RL +T R L V +LGLP +++ Sbjct: 555 AFELASLYNRFYSQCPVLKADPLEQAKRLAITERVSQQLERVFMILGLPSLKKI 608 >Q01U38.1 Q01U38_SOLUE Arginyl-tRNA synthetase EC=6.1.1.19 Length = 642 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 251/635 (39%), Positives = 341/635 (53%), Gaps = 64/635 (10%) Query: 31 VLLEQPPNADFGDYSSNIAMQLAKKLRKTPMAVAGLITAEFQRIGAAGGIVQRIEIANPG 90 V +EQP +DFG+ + A QLAK+LR+ P +A + E IG G+ +E+A G Sbjct: 27 VSIEQPRQSDFGEIAVPAAFQLAKQLRQAPKKIAAELVDE---IGPIAGVAS-LEVAGNG 82 Query: 91 FINLYINWQEWAG----QTFKLPPGSGEKVIIEHTSVNPNKSLHIGHLRNSCIGDALVRI 146 +IN+ ++ +A + GSG K+I+EHT++NPNK+ HIGHLRN+ +GD VR+ Sbjct: 83 YINIRLDRGAYAAALVSGAGEAAAGSGGKIIVEHTNINPNKAAHIGHLRNATLGDTFVRM 142 Query: 147 LRKTGHNVEVHNYVDDLGNQLADTVVGL----------LRVPLAGEHVRFGDYCWDIYAA 196 LR G VEV NY+D+ G Q+AD VVG +R L VRF YCWD+YA Sbjct: 143 LRAGGKQVEVQNYIDNTGVQVADVVVGFHYLEKKSPADVRALLGDPAVRFDYYCWDLYAR 202 Query: 197 VNKKYAEQPEMIRQRTEILHELEEGHGNTAWLGQLAAERIVREHVAEMRSFGIEYDLLVW 256 + Y + E ++ R+ LH +E G G A L L A+ IV+ H+ M +EYD+L Sbjct: 203 TSSYYKDNAEALKWRSATLHAIEAGEGEVAELAHLVADAIVKAHLKTMLRLDVEYDVLPR 262 Query: 257 ESSIVQAGFWSSASGLLKETDMFVQETEGKLAGCWILKQPAAEGMENGSEDHQKDKVLVR 316 ES I+ FW+SA LLKE ETEGK +GCW++ + EG KV+VR Sbjct: 263 ESEILHLKFWASAFELLKERKAIYFETEGKNSGCWVMPGLSEEG-----------KVIVR 311 Query: 317 SNGILTYTAKDIAYHLWKFGLLDKDFTYSEFNAG-----LWTTG--LTGAPKSFGKADRV 369 S+G +TY KDIAY LWKFGLL KDF Y F LW T A FG +V Sbjct: 312 SDGTVTYVGKDIAYQLWKFGLLGKDFFYRPFQTYADGRVLWVTTDEPADAGHQFGHGTQV 371 Query: 370 VNVIDYRQEYPQAMVKQALEVLGFTAQAEKLHHVSYGVVSLSPASAAGLGIDTS--DGKS 427 NVID RQ Y Q +V L LG+ QA++ H +Y +V+LSP A LGI S D K Sbjct: 372 FNVIDARQSYLQDVVVAGLRALGYGEQADQSIHFNYEMVALSPRCCADLGIPLSEEDRKR 431 Query: 428 SYA-MSGRQGIGVKVADLVQ-LMESSIEAARS---DVTGLSSRLIAT----AAIRYYLLR 478 Y +SGR+G+GVK DL+ L+ ++E S D ++R +AT AA+RY+LL+ Sbjct: 432 PYVEVSGRKGLGVKADDLMDSLIAKALEEVVSRHPDDDAAANRQVATQIAIAALRYFLLK 491 Query: 479 FNLGTEIVFDFKQATEISGNTGVYLMYTYARAGRVLSKAEDPAELTAVPRFPAQLDTAEL 538 + T I FD ++A G TG YL Y RAGRVLSK + E +P F +L + Sbjct: 492 YTRNTVIAFDLQEALSFVGETGPYLQYIAVRAGRVLSKLTERGE--ELPDFTKELGAEAM 549 Query: 539 ALLRQLST---W---------EDTLYTAGRELTPNTICSYAHTLASLFNNFYSSCPILKG 586 A RQ++T W + L A P + Y + LA F+NFY PIL Sbjct: 550 A--RQMATEDFWQMLLAASKADSALENAISAGEPAHMARYGYQLAQAFSNFYEKYPILNE 607 Query: 587 EESSIR-FRLWLTLRFQSTLGEVLELLGLPKPERM 620 E + F LW+T F+ L ++LG+ P M Sbjct: 608 ENREKKVFLLWMTDFFRRQLERTADVLGIQIPAYM 642 >Q1IQ17.1 Q1IQ17_ACIBL Arginyl-tRNA synthetase EC=6.1.1.19 Length = 647 Score = 358 bits (920), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 225/633 (35%), Positives = 326/633 (51%), Gaps = 54/633 (8%) Query: 30 TVLLEQPPNADFGDYSSNIAMQLAKKLRKTPMAVAGLITAEFQRIGAAGGIVQRIEIANP 89 T++++ PP + G+Y+ + +LAK+LRK P +A + E I ++ E+A Sbjct: 27 TLVVDAPPKVEMGEYALPFSFELAKRLRKAPRKIAEEVATELPPIEG----FEKPEVAGA 82 Query: 90 GFINLYINWQEWAGQTFK---LPPGSGEKVIIEHTSVNPNKSLHIGHLRNSCIGDALVRI 146 G+IN + + A K P K+++EHTS+NPNK+ HIGHLRNS +GD VR+ Sbjct: 83 GYINFRLKRGDAATALAKGESTPVTHDGKILVEHTSINPNKAAHIGHLRNSILGDTFVRL 142 Query: 147 LRKTGHNVEVHNYVDDLGNQLADTVVGLLRVPLAG--------EHVRFGDYCWDIYAAVN 198 LR G V++ NY+D+ G Q+AD VVG + E +F YCWD+YA + Sbjct: 143 LRAAGRTVDIQNYIDNTGVQVADVVVGFTHIENKSKAEITALTEQPKFDYYCWDLYAHTS 202 Query: 199 KKYAEQPEMIRQRTEILHELEEGHGNTAWLGQLAAERIVREHVAEMRSFGIEYDLLVWES 258 + Y + E + R E+LH +E G + + ++ + ++R H+ M GIEYD L ES Sbjct: 203 QWYEQAAENKKIRLEVLHAIEHGGNELSEIAEIISRAVLRRHLETMDRLGIEYDFLPRES 262 Query: 259 SIVQAGFWSSASGLLKETDMFVQETEGKLAGCWILKQPAAEGMENGSEDHQKDKVLVRSN 318 I++ FW+ A LKE + ETEGK GCW++ +P E + +G D + KV+VRSN Sbjct: 263 EILRLNFWALAFEQLKEKGVLYFETEGKNKGCWVMTRPGRERV-DGQPD-EDAKVIVRSN 320 Query: 319 GILTYTAKDIAYHLWKFGLLDKDFTYSEF-----NAGLWTT-----GLTGAPKSFGKADR 368 G + Y KDIAYHLWKFGLL +DF Y +F +W + G + P FG Sbjct: 321 GTVGYVGKDIAYHLWKFGLLGRDFGYKKFYLYPNGQQVWISCDPAEGESDHP-HFGGVSE 379 Query: 369 VVNVIDYRQEYPQAMVKQALEVLGFTAQAEKLHHVSYGVVSLSPASAAGLGIDTSD---G 425 + NVID RQ PQ VK+A+ +LG+ +A+ H SY +V+L+P A LG D S+ Sbjct: 380 IYNVIDTRQSDPQETVKEAIRLLGYNDKADHYTHFSYEMVALTPRCAIDLGYDVSEDDRA 439 Query: 426 KSSYAMSGRQGIGVKVADLVQLMESSIEAARSDVTGLSSRL-----------IATAAIRY 474 KS +SGR+G GVK DL+ + I+AA +V L IA A+RY Sbjct: 440 KSYIEVSGRKGFGVKADDLIDKL---IDAATKEVDSRHPELTESERREIGTQIAIGALRY 496 Query: 475 YLLRFNLGTEIVFDFKQATEISGNTGVYLMYTYARAGRVLSKAE-DPAELTA-----VPR 528 ++L++ + I FDFK+A G TG Y Y RA + KA P + A Sbjct: 497 FMLKYTKASVIAFDFKEALAFEGETGPYAQYAVVRATNIFRKAGIAPGDALAYNVDFTKH 556 Query: 529 FPAQLDTAELALLRQLSTWEDTLYTAGRELTPNTICSYAHTLASLFNNFYSSCPILKGE- 587 F + E+ L+ ++ L + E P +A LA LFNNFY IL E Sbjct: 557 FAETAEIWEVWLMAGKTSQILELCISQSE--PAYAAKHAFQLAQLFNNFYHRHHILTEED 614 Query: 588 ESSIRFRLWLTLRFQSTLGEVLELLGLPKPERM 620 E +F L + L VL +G+ P M Sbjct: 615 EGRKKFLLATAAVMRRELIAVLAAMGISVPPVM 647 >C1F3Q4.1 C1F3Q4_ACIC5 Arginine--tRNA ligase EC=6.1.1.19 Length = 689 Score = 342 bits (878), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 241/670 (35%), Positives = 334/670 (49%), Gaps = 89/670 (13%) Query: 29 ATVLLEQPPNADFGDYSSNIAMQLAKKLRKTPMAVAGLITAEFQRIGAAGGIVQRIEIAN 88 A + +EQPP + FGDY+ +A +LA+ LRK P +A I A G E+A Sbjct: 31 AILKVEQPPESKFGDYALPLAFELARALRKAPRKIAEEIVAALAVHPIPG--FAAFEVAG 88 Query: 89 PGFINLYINW----QEWAGQTFKLPPGSGEKVIIEHTSVNPNKSLHIGHLRNSCIGDALV 144 G+IN ++ +++ + G +++EHTS+NPNK+ H+GHLRN+ +GD V Sbjct: 89 AGYINARLDRAAFVRDFVKRRMYWKQGLA-YILVEHTSINPNKAAHVGHLRNAILGDTFV 147 Query: 145 RILRKTGHNVEVHNYVDDLGNQLADTVVGL-------------LRVPLAGEHVRFGDYCW 191 R+L G V V NY+D+ G Q+AD VV L L LA E R YCW Sbjct: 148 RLLEAQGFLVGVQNYIDNTGVQVADIVVALQHLEGLNLAAVQSLMQRLAAEGQRIDFYCW 207 Query: 192 DIYAAVNKKYAEQPEMI---RQ-RTEILHELEEGHGNTAWLGQLAAERIVREHVAEMRSF 247 D+YA V++ Y PE RQ R + LH +E G ++A +G L A ++R H+ M Sbjct: 208 DLYARVSQWYEADPEQKTARRQLRLDTLHAIEHGGNDSAAIGDLIATAVLRRHLETMLRL 267 Query: 248 GIEYDLLVWESSIVQAGFWSSASGLLKETDMFVQETEGKLAGCWILKQP----------A 297 GIEYD L ES I+ FW A L+K + ETEGK GCW++ +P A Sbjct: 268 GIEYDFLPRESEILHLHFWEEAFELMKAKGVLYFETEGKNKGCWVMTRPGTSRTGEPLRA 327 Query: 298 AEGMENGSEDHQKD---KVLVRSNGILTYTAKDIAYHLWKFGLLDKDFTYSEF------- 347 + +E D KV+VRSNG +TY KDIAYHLWKFGLL+KDF Y +F Sbjct: 328 TDDTSPATESAAPDEDAKVIVRSNGTVTYVGKDIAYHLWKFGLLEKDFKYKKFFQYPPST 387 Query: 348 ----NAGLWTTGLTGA---PKSFGKADRVVNVIDYRQEYPQAMVKQALEVLGFTAQAEKL 400 W + + + P+ FGKA+ + NVID RQ PQA V +AL +G+T QA + Sbjct: 388 KFEDGRECWISAVESSEFRPR-FGKAEAIYNVIDARQSDPQANVIEALRGMGYTEQAARY 446 Query: 401 HHVSYGVVSLSPASAAGLG--IDTSDGKSSY-AMSGRQGIGVKVADLVQLMESSIEAARS 457 H SY +V+L+P A LG + D Y +SGR+G GVK DL+ + I+A +S Sbjct: 447 THFSYEMVALTPRCALDLGYQVPEEDLTRPYIEVSGRKGFGVKADDLIDKL---IDATQS 503 Query: 458 DVT-----------GLSSRLIATAAIRYYLLRFNLGTEIVFDFKQATEISGNTGVYLMYT 506 +V ++R IA A+RY++L++ T I FDFK A G TG YL Y Sbjct: 504 EVASRHPELPEEEQAQTARQIAVGALRYFMLKYTRNTVIAFDFKDALSFEGETGPYLQYA 563 Query: 507 YARAGRVLSKAE-DPAELTA----------VPRFPAQLDTAELAL-LRQLST---WEDTL 551 R + KA+ P E + P + A A+ LR T E + Sbjct: 564 AVRTRSIFRKADMTPDEALSALAALPADRIAPFLSGEDAEAIWAVWLRAGKTALLLEQCI 623 Query: 552 YTAGRELTPNTICSYAHTLASLFNNFYSSCPILKGEESSIRFRLWLTLRF-QSTLGEVLE 610 TA P + +A LA F+NFY IL E+++ + L T Q L L Sbjct: 624 QTA----EPAYLAKHAFQLAQDFSNFYRRHHILTEEDAAKKTLLLATAAVAQRELIRSLA 679 Query: 611 LLGLPKPERM 620 LG+ PE M Sbjct: 680 WLGIDAPEVM 689 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,742,638,181 Number of extensions: 157618830 Number of successful extensions: 396263 Number of sequences better than 1.0e-05: 1887 Number of HSP's gapped: 390190 Number of HSP's successfully gapped: 2869 Length of query: 620 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 478 Effective length of database: 1,722,912,073 Effective search space: 823551970894 Effective search space used: 823551970894 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)