BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0197.0026.p
         (226 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D889.1 B1D889_9BACL Putative uncharacterized protein                259   9e-68
B1D890.1 B1D890_9BACL Putative uncharacterized protein                155   2e-36

>B1D889.1 B1D889_9BACL Putative uncharacterized protein
          Length = 208

 Score =  259 bits (663), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 120/185 (64%), Positives = 147/185 (79%), Gaps = 2/185 (1%)

Query: 44  LVKAVHHNGIVALKMHFNEVQGQVMNMEVYGPVFVFHVLDEAKDVYSCGFFLHELVTRFQ 103
           LVKAV HNG VAL+ HF +VQGQV+N E+YGPVFV+ V DE+ + Y CGFFL EL+  FQ
Sbjct: 24  LVKAVQHNGFVALRQHFEDVQGQVLNQELYGPVFVYKVKDESGNDYVCGFFLRELIANFQ 83

Query: 104 TNNSPNV-WMASFFIDLMKVKGGKPLTPPPASEEEAKAMIDNVLVPHCIEAVREEFAPEQ 162
             N     WMASFF +LMK +GGKPL  PPASE++AKA+ID VL+PHCI++V +EF  E+
Sbjct: 84  AGNEEATEWMASFFYELMKTEGGKPLPQPPASEDDAKALIDKVLIPHCIKSVEDEFPEEK 143

Query: 163 VHAGLAWNET-HGPVFEAGFPAVTEGNNVCAIPLHMLLIHLQLNRDPSELLLQGLYNIRK 221
           VHAGLAWNE   GPVFE GFPA+++GNNVCA  LH+L  HL +NRDP+ELLL+GLY IR+
Sbjct: 144 VHAGLAWNEELKGPVFETGFPAISDGNNVCAFSLHLLYTHLLINRDPAELLLRGLYKIRE 203

Query: 222 EHGME 226
           EHGM+
Sbjct: 204 EHGMD 208


>B1D890.1 B1D890_9BACL Putative uncharacterized protein
          Length = 209

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 111/185 (60%), Gaps = 4/185 (2%)

Query: 44  LVKAVHHNGIVALKMHFNEVQGQVMNMEVYGPVFVFHVLDEAKDVYSCGFFLHELVTRFQ 103
           L+K +   G+  L+  F  V+G V+N E +G +F++ V ++ K  Y CGFFL EL  +FQ
Sbjct: 27  LMKTIFQKGLSTLRPFFPHVEGLVVNDEKFGQIFIYRVTNDFKKSYDCGFFLRELAEQFQ 86

Query: 104 TN-NSPNVWMASFFIDLMKV-KGGKPLTPPPASEEEAKAMIDNVLVPHCIEAVREEFAPE 161
                   WMASFF +LMK  KGGK L  PP SE++ +  ID+VL PHC+ AV EEFAP 
Sbjct: 87  DGGREAGEWMASFFYELMKENKGGKELPAPPESEQKEEQFIDDVLFPHCLSAVSEEFAPL 146

Query: 162 QVHAGLAWNETHGPVFEAGFPAVTEGNNVCAIPLHMLLIHLQLNRDPSELLLQGLYNIRK 221
            +      +E   PV E GF  ++E    C  P+H L   +QLNRDPS+ +L  L  +R+
Sbjct: 147 AITGNRGLDENLTPVLELGFKDISEEK--CVFPIHYLYKMMQLNRDPSDTILVQLAKLRQ 204

Query: 222 EHGME 226
           ++G+E
Sbjct: 205 KYGVE 209


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,317,725,275
Number of extensions: 51769775
Number of successful extensions: 101552
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 101546
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 3,060,696,203
Length adjustment: 131
Effective length of query: 95
Effective length of database: 1,826,543,238
Effective search space: 173521607610
Effective search space used: 173521607610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)