BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0197.0025.p (179 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value O31780.1 YMCC_BACSU Uncharacterized membrane protein ymcC 193 5e-48 B3Z436.1 B3Z436_BACCE Putative uncharacterized protein 190 6e-47 Q81NH0.1 Q81NH0_BACAN Putative uncharacterized protein 188 2e-46 C3P126.1 C3P126_BACAA Putative uncharacterized protein 188 2e-46 C3LCQ5.1 C3LCQ5_BACAC Putative uncharacterized protein 188 2e-46 >O31780.1 YMCC_BACSU Uncharacterized membrane protein ymcC Length = 185 Score = 193 bits (491), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 90/179 (50%), Positives = 114/179 (63%) Query: 1 MNFVAWAIVACEVLFWVVILAGFSARYLFKRQKLGLFFLALTPVXXXXXXXXXXXXXYNG 60 MN +AW IV CE+ FWVVI+ G + RY+FKR LGL FLALTPV Y G Sbjct: 1 MNGIAWMIVFCEIAFWVVIVLGLAVRYVFKRHTLGLLFLALTPVIDLILLAATGVDLYRG 60 Query: 61 XXXXXXXXXXXIYISVSIVFGKSMISWADERFRYYVTKQGPPPVKRYGMDHARHYFKSWL 120 +YI +SI +GK MI WADE+F+YYVTK+G P+KR+GMDHA+H K WL Sbjct: 61 ASATAAHGIAAVYIGISIAYGKQMIQWADEKFQYYVTKKGTKPLKRFGMDHAKHGAKGWL 120 Query: 121 KHXXXXXXXXXXXXXXXXWIDDPARTEALFGILKTWTIVVGIDLLISSSYFIWPRKAKA 179 +H +I+D +RTEAL GILK WT+++GID LI++SYFIWP+K KA Sbjct: 121 RHVLAYLIGAGLLAGMIYFINDSSRTEALSGILKLWTVIIGIDFLITASYFIWPKKEKA 179 >B3Z436.1 B3Z436_BACCE Putative uncharacterized protein Length = 179 Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 93/179 (51%), Positives = 111/179 (62%) Query: 1 MNFVAWAIVACEVLFWVVILAGFSARYLFKRQKLGLFFLALTPVXXXXXXXXXXXXXYNG 60 MN +AW IVACE+ FWVVI G RY+FK+ KLGLFFLALTPV Y G Sbjct: 1 MNVIAWLIVACEIGFWVVITLGLLTRYIFKKNKLGLFFLALTPVIDLILLVVTGVDLYRG 60 Query: 61 XXXXXXXXXXXIYISVSIVFGKSMISWADERFRYYVTKQGPPPVKRYGMDHARHYFKSWL 120 IYI +SI FG+SMI WAD RF+YYV KQG PVKR+GMD+A+HYFKSW Sbjct: 61 ATATQVHSIAAIYIGISIAFGRSMIEWADIRFQYYVMKQGAKPVKRFGMDYAKHYFKSWG 120 Query: 121 KHXXXXXXXXXXXXXXXXWIDDPARTEALFGILKTWTIVVGIDLLISSSYFIWPRKAKA 179 +H I+D +RTE L G LK WT+V+GIDLLI+ S FIWP++ K Sbjct: 121 QHVLAFLIGAGILFVLIYLINDSSRTEVLAGFLKVWTLVLGIDLLIAISNFIWPKRKKG 179 >Q81NH0.1 Q81NH0_BACAN Putative uncharacterized protein Length = 179 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/179 (51%), Positives = 110/179 (61%) Query: 1 MNFVAWAIVACEVLFWVVILAGFSARYLFKRQKLGLFFLALTPVXXXXXXXXXXXXXYNG 60 MN +AW IVACE+ FWVVI G RY+ K+ KLGLFFLALTPV Y G Sbjct: 1 MNVIAWLIVACEIGFWVVITLGLLTRYILKKNKLGLFFLALTPVIDLILLVVTGVDLYRG 60 Query: 61 XXXXXXXXXXXIYISVSIVFGKSMISWADERFRYYVTKQGPPPVKRYGMDHARHYFKSWL 120 IYI +SI FG+SMI WAD RF+YYV KQG PVKR+GMD+A+HYFKSW Sbjct: 61 ATATQVHAIAAIYIGISIAFGRSMIEWADIRFQYYVMKQGAKPVKRFGMDYAKHYFKSWG 120 Query: 121 KHXXXXXXXXXXXXXXXXWIDDPARTEALFGILKTWTIVVGIDLLISSSYFIWPRKAKA 179 +H I+D +RTE L G LK WT+V+GIDLLI+ S FIWP++ K Sbjct: 121 QHVLAFLIGAGILFVLIYLINDSSRTEVLAGFLKVWTLVLGIDLLIAISNFIWPKRKKG 179 >C3P126.1 C3P126_BACAA Putative uncharacterized protein Length = 179 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/179 (51%), Positives = 110/179 (61%) Query: 1 MNFVAWAIVACEVLFWVVILAGFSARYLFKRQKLGLFFLALTPVXXXXXXXXXXXXXYNG 60 MN +AW IVACE+ FWVVI G RY+ K+ KLGLFFLALTPV Y G Sbjct: 1 MNVIAWLIVACEIGFWVVITLGLLTRYILKKNKLGLFFLALTPVIDLILLVVTGVDLYRG 60 Query: 61 XXXXXXXXXXXIYISVSIVFGKSMISWADERFRYYVTKQGPPPVKRYGMDHARHYFKSWL 120 IYI +SI FG+SMI WAD RF+YYV KQG PVKR+GMD+A+HYFKSW Sbjct: 61 ATATQVHAIAAIYIGISIAFGRSMIEWADIRFQYYVMKQGAKPVKRFGMDYAKHYFKSWG 120 Query: 121 KHXXXXXXXXXXXXXXXXWIDDPARTEALFGILKTWTIVVGIDLLISSSYFIWPRKAKA 179 +H I+D +RTE L G LK WT+V+GIDLLI+ S FIWP++ K Sbjct: 121 QHVLAFLIGAGILFVLIYLINDSSRTEVLAGFLKVWTLVLGIDLLIAISNFIWPKRKKG 179 >C3LCQ5.1 C3LCQ5_BACAC Putative uncharacterized protein Length = 179 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/179 (51%), Positives = 110/179 (61%) Query: 1 MNFVAWAIVACEVLFWVVILAGFSARYLFKRQKLGLFFLALTPVXXXXXXXXXXXXXYNG 60 MN +AW IVACE+ FWVVI G RY+ K+ KLGLFFLALTPV Y G Sbjct: 1 MNVIAWLIVACEIGFWVVITLGLLTRYILKKNKLGLFFLALTPVIDLILLVVTGVDLYRG 60 Query: 61 XXXXXXXXXXXIYISVSIVFGKSMISWADERFRYYVTKQGPPPVKRYGMDHARHYFKSWL 120 IYI +SI FG+SMI WAD RF+YYV KQG PVKR+GMD+A+HYFKSW Sbjct: 61 ATATQVHAIAAIYIGISIAFGRSMIEWADIRFQYYVMKQGAKPVKRFGMDYAKHYFKSWG 120 Query: 121 KHXXXXXXXXXXXXXXXXWIDDPARTEALFGILKTWTIVVGIDLLISSSYFIWPRKAKA 179 +H I+D +RTE L G LK WT+V+GIDLLI+ S FIWP++ K Sbjct: 121 QHVLAFLIGAGILFVLIYLINDSSRTEVLAGFLKVWTLVLGIDLLIAISNFIWPKRKKG 179 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.142 0.481 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 870,988,474 Number of extensions: 24444515 Number of successful extensions: 61436 Number of sequences better than 1.0e-05: 76 Number of HSP's gapped: 61395 Number of HSP's successfully gapped: 76 Length of query: 179 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 52 Effective length of database: 1,864,227,298 Effective search space: 96939819496 Effective search space used: 96939819496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 126 (53.1 bits)