BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0197.0022.p (306 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D716.1 B1D716_9BACL Oligoendopeptidase, M3 family 508 e-142 B3KGZ2.1 B3KGZ2_9BACI Oligoendopeptidase, M3 family 501 e-140 C2V904.1 C2V904_BACCE Oligoendopeptidase, M3 478 e-133 C2USK6.1 C2USK6_BACCE Oligoendopeptidase, M3 478 e-133 C2XR67.1 C2XR67_BACCE Oligoendopeptidase, M3 478 e-133 >B1D716.1 B1D716_9BACL Oligoendopeptidase, M3 family Length = 564 Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust. Identities = 233/306 (76%), Positives = 262/306 (85%) Query: 1 LGLEQLKYYDESLNFNNGNATPKGDPDWIIANGAKMYKELSPETDEFFGFMLENELMDLV 60 +G++ L YYDE+L F GNA PKG PDWI+ NGA+MY ELSPETDEFF FML+N LMDLV Sbjct: 259 IGVDHLYYYDENLAFLTGNAKPKGSPDWIVENGARMYAELSPETDEFFRFMLDNGLMDLV 318 Query: 61 SKKGKQGGGYCTYLSLHEAPFIFSNFNGTSGDIDVLTHEVGHAFQVYQSRHIHVPEYAFP 120 +KKGKQGGGYCTY+S + APFIFSNFNGTSGDIDVLTHE GHAFQVY+SR VPEYAFP Sbjct: 319 AKKGKQGGGYCTYISEYGAPFIFSNFNGTSGDIDVLTHEAGHAFQVYESRSFAVPEYAFP 378 Query: 121 TYEAAEIHSMSMEFFAWPWMDLFFEEDAAKYRFNHLGDSLQFIPYGVSVDEFQHYVYANP 180 TYEA EIHSMSMEFF WPWM+LFF+ED KYRF HL +L F+PYGV+VDEFQH+VY NP Sbjct: 379 TYEACEIHSMSMEFFTWPWMELFFKEDVDKYRFQHLASALLFLPYGVTVDEFQHFVYENP 438 Query: 181 DATPAERKHAWREIEKKYLPLRDYEDNTYLEQGGFWQKQAHIFRSPFYYIDYTLAQLCAF 240 DATPAERK AWREIEKKYLP RDYE+N+YLE G FWQ+Q HIF SPFYYIDYTLAQ+CAF Sbjct: 439 DATPAERKAAWREIEKKYLPHRDYEENSYLEHGAFWQRQGHIFGSPFYYIDYTLAQICAF 498 Query: 241 QFWKRSNEDFTLAWADYLRLCQAGGSLSFLQLVELAGLKSPFEDGSIRSVIGNIENWLNS 300 QFWKR +ED T AWADY +LCQ GGSLSF +LV++AGL SPFEDG + SVIG+I+ WL S Sbjct: 499 QFWKRMHEDRTSAWADYHKLCQQGGSLSFTELVKVAGLISPFEDGCVTSVIGSIDGWLES 558 Query: 301 VDDKQL 306 VDDK L Sbjct: 559 VDDKAL 564 >B3KGZ2.1 B3KGZ2_9BACI Oligoendopeptidase, M3 family Length = 564 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 230/306 (75%), Positives = 261/306 (85%) Query: 1 LGLEQLKYYDESLNFNNGNATPKGDPDWIIANGAKMYKELSPETDEFFGFMLENELMDLV 60 + ++QL YYDE+ +F +GNATPKGDPDWI+ NGAKMY+ELSPET EFF FM EN LMDLV Sbjct: 259 IDVDQLLYYDENFSFKSGNATPKGDPDWIVNNGAKMYEELSPETHEFFTFMQENGLMDLV 318 Query: 61 SKKGKQGGGYCTYLSLHEAPFIFSNFNGTSGDIDVLTHEVGHAFQVYQSRHIHVPEYAFP 120 +KKGKQ GGYCTY+S + APFIFSNFNGTSGDIDVLTHE GHAFQVY+SR VPEY FP Sbjct: 319 AKKGKQSGGYCTYISEYGAPFIFSNFNGTSGDIDVLTHEAGHAFQVYESRGFEVPEYGFP 378 Query: 121 TYEAAEIHSMSMEFFAWPWMDLFFEEDAAKYRFNHLGDSLQFIPYGVSVDEFQHYVYANP 180 TYEA EIHSMSMEFF WPWMD FFE++A KYRF+HL L FIPYGV+VDEFQH+VY NP Sbjct: 379 TYEACEIHSMSMEFFTWPWMDRFFEDEADKYRFDHLASGLIFIPYGVTVDEFQHFVYENP 438 Query: 181 DATPAERKHAWREIEKKYLPLRDYEDNTYLEQGGFWQKQAHIFRSPFYYIDYTLAQLCAF 240 DATPAERK AWREIE+KYLP R+Y+DN YLEQGGFW KQ HIF SPFYYIDYTLAQ+CAF Sbjct: 439 DATPAERKQAWREIERKYLPHRNYDDNAYLEQGGFWHKQGHIFNSPFYYIDYTLAQICAF 498 Query: 241 QFWKRSNEDFTLAWADYLRLCQAGGSLSFLQLVELAGLKSPFEDGSIRSVIGNIENWLNS 300 QFWK+ +ED + AWADYL LC+ GGS SF +LV++AGL SPFEDG + SVIG+IE WL+S Sbjct: 499 QFWKKMHEDQSAAWADYLHLCRQGGSESFTELVKVAGLISPFEDGCVTSVIGSIEAWLDS 558 Query: 301 VDDKQL 306 VDD L Sbjct: 559 VDDTAL 564 >C2V904.1 C2V904_BACCE Oligoendopeptidase, M3 Length = 564 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 216/306 (70%), Positives = 254/306 (83%) Query: 1 LGLEQLKYYDESLNFNNGNATPKGDPDWIIANGAKMYKELSPETDEFFGFMLENELMDLV 60 +G+E+L YYDE+ F GN TPKGD DWII +G MYKELS ETDEFF FML+N+L+DLV Sbjct: 259 IGVEKLAYYDENFEFATGNPTPKGDADWIINHGKTMYKELSAETDEFFNFMLDNDLLDLV 318 Query: 61 SKKGKQGGGYCTYLSLHEAPFIFSNFNGTSGDIDVLTHEVGHAFQVYQSRHIHVPEYAFP 120 +KKGK GGGYCTY+ ++APFIFSNFNGTSGDIDVLTHE GHAFQVY+SR +PEY +P Sbjct: 319 AKKGKAGGGYCTYIENYKAPFIFSNFNGTSGDIDVLTHEAGHAFQVYESRKFEIPEYNWP 378 Query: 121 TYEAAEIHSMSMEFFAWPWMDLFFEEDAAKYRFNHLGDSLQFIPYGVSVDEFQHYVYANP 180 TYEA EIHSMSMEFF WPWM LFFEEDA KY F+HL +L F+PYGVSVDE+QHYVY NP Sbjct: 379 TYEACEIHSMSMEFFTWPWMKLFFEEDADKYYFSHLSSALLFLPYGVSVDEYQHYVYENP 438 Query: 181 DATPAERKHAWREIEKKYLPLRDYEDNTYLEQGGFWQKQAHIFRSPFYYIDYTLAQLCAF 240 +A+PAERK AWR IEKKYLP RDYEDN YLE+GGFWQ+Q HI+ SPFYYIDYTLAQ+CA Sbjct: 439 EASPAERKTAWRNIEKKYLPHRDYEDNDYLERGGFWQRQGHIYSSPFYYIDYTLAQICAL 498 Query: 241 QFWKRSNEDFTLAWADYLRLCQAGGSLSFLQLVELAGLKSPFEDGSIRSVIGNIENWLNS 300 QFWKR+ ++ AW DY+ LCQ GGS SFL+LVE+A L SPF +G ++SVI IE WL++ Sbjct: 499 QFWKRARDNRQEAWEDYVNLCQQGGSKSFLELVEVANLTSPFAEGCVKSVITEIEAWLHA 558 Query: 301 VDDKQL 306 +DD +L Sbjct: 559 IDDTKL 564 >C2USK6.1 C2USK6_BACCE Oligoendopeptidase, M3 Length = 564 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 216/306 (70%), Positives = 254/306 (83%) Query: 1 LGLEQLKYYDESLNFNNGNATPKGDPDWIIANGAKMYKELSPETDEFFGFMLENELMDLV 60 +G+E+L YYDE+ F GN TPKGD DWII +G MYKELS ETDEFF FML+N+L+DLV Sbjct: 259 IGVEKLAYYDENFEFATGNPTPKGDADWIINHGKTMYKELSAETDEFFNFMLDNDLLDLV 318 Query: 61 SKKGKQGGGYCTYLSLHEAPFIFSNFNGTSGDIDVLTHEVGHAFQVYQSRHIHVPEYAFP 120 +KKGK GGGYCTY+ ++APFIFSNFNGTSGDIDVLTHE GHAFQVY+SR +PEY +P Sbjct: 319 AKKGKAGGGYCTYIENYKAPFIFSNFNGTSGDIDVLTHEAGHAFQVYESRKFEIPEYNWP 378 Query: 121 TYEAAEIHSMSMEFFAWPWMDLFFEEDAAKYRFNHLGDSLQFIPYGVSVDEFQHYVYANP 180 TYEA EIHSMSMEFF WPWM LFFEEDA KY F+HL +L F+PYGVSVDE+QHYVY NP Sbjct: 379 TYEACEIHSMSMEFFTWPWMKLFFEEDADKYYFSHLSSALLFLPYGVSVDEYQHYVYENP 438 Query: 181 DATPAERKHAWREIEKKYLPLRDYEDNTYLEQGGFWQKQAHIFRSPFYYIDYTLAQLCAF 240 +A+PAERK AWR IEKKYLP RDYEDN YLE+GGFWQ+Q HI+ SPFYYIDYTLAQ+CA Sbjct: 439 EASPAERKTAWRNIEKKYLPHRDYEDNDYLERGGFWQRQGHIYSSPFYYIDYTLAQICAL 498 Query: 241 QFWKRSNEDFTLAWADYLRLCQAGGSLSFLQLVELAGLKSPFEDGSIRSVIGNIENWLNS 300 QFWKR+ ++ AW DY+ LCQ GGS SFL+LVE+A L SPF +G ++SVI IE WL++ Sbjct: 499 QFWKRARDNRQEAWEDYVNLCQQGGSKSFLELVEVANLTSPFAEGCVKSVITEIEAWLHA 558 Query: 301 VDDKQL 306 +DD +L Sbjct: 559 IDDTKL 564 >C2XR67.1 C2XR67_BACCE Oligoendopeptidase, M3 Length = 564 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 217/306 (70%), Positives = 253/306 (82%) Query: 1 LGLEQLKYYDESLNFNNGNATPKGDPDWIIANGAKMYKELSPETDEFFGFMLENELMDLV 60 +G+E+L YYDE+ F GN TPKGD DWII +G MYKELS ETDEFF FML+N+L+DLV Sbjct: 259 IGVEKLAYYDENFEFATGNPTPKGDADWIINHGKTMYKELSAETDEFFNFMLDNDLLDLV 318 Query: 61 SKKGKQGGGYCTYLSLHEAPFIFSNFNGTSGDIDVLTHEVGHAFQVYQSRHIHVPEYAFP 120 +KKGK GGGYCTY+ ++APFIFSNFNGTSGDIDVLTHE GHAFQVY+SR +PEY +P Sbjct: 319 AKKGKAGGGYCTYIENYKAPFIFSNFNGTSGDIDVLTHEAGHAFQVYESRKYEIPEYNWP 378 Query: 121 TYEAAEIHSMSMEFFAWPWMDLFFEEDAAKYRFNHLGDSLQFIPYGVSVDEFQHYVYANP 180 TYEA EIHSMSMEFF WPWM LFFEEDA KY F+HL +L F+PYGVSVDE+QHYVY NP Sbjct: 379 TYEACEIHSMSMEFFTWPWMKLFFEEDADKYYFSHLSSALLFLPYGVSVDEYQHYVYENP 438 Query: 181 DATPAERKHAWREIEKKYLPLRDYEDNTYLEQGGFWQKQAHIFRSPFYYIDYTLAQLCAF 240 +A+PAERK AWR IEKKYLP RDYEDN YLE+GGFWQ+Q HI+ SPFYYIDYTLAQ+CA Sbjct: 439 EASPAERKSAWRNIEKKYLPHRDYEDNDYLERGGFWQRQGHIYSSPFYYIDYTLAQICAL 498 Query: 241 QFWKRSNEDFTLAWADYLRLCQAGGSLSFLQLVELAGLKSPFEDGSIRSVIGNIENWLNS 300 QFWKR+ ++ AW DY+ LCQ GGS SFL+LVE+A L SPF +G ++SVI IE WL + Sbjct: 499 QFWKRARDNRQEAWEDYVNLCQQGGSKSFLELVEVANLTSPFAEGCVKSVITEIEAWLRA 558 Query: 301 VDDKQL 306 VDD +L Sbjct: 559 VDDTKL 564 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,114,105,406 Number of extensions: 93271635 Number of successful extensions: 181762 Number of sequences better than 1.0e-05: 449 Number of HSP's gapped: 181549 Number of HSP's successfully gapped: 449 Length of query: 306 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 171 Effective length of database: 1,788,859,178 Effective search space: 305894919438 Effective search space used: 305894919438 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)