BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0197.0021.p (278 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGZ2.1 B3KGZ2_9BACI Oligoendopeptidase, M3 family 355 2e-96 B1D716.1 B1D716_9BACL Oligoendopeptidase, M3 family 352 2e-95 C5D7V8.1 C5D7V8_9BACI Oligoendopeptidase, M3 family 320 1e-85 Q4W803.1 Q4W803_9BACI Oligopeptidase 319 2e-85 A7GMM9.1 A7GMM9_BACCN Oligoendopeptidase, M3 family 301 3e-80 >B3KGZ2.1 B3KGZ2_9BACI Oligoendopeptidase, M3 family Length = 564 Score = 355 bits (912), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 177/254 (69%), Positives = 209/254 (82%), Gaps = 1/254 (0%) Query: 14 MKFSEYRYERPDVSKLKVRFAELLKGL-NADSLEEQRAAFSEINKLRNEFDTMSTLVNIR 72 MKFSEYRYERPDV + +F E L +A + EEQ A + INKLR+E DT+S LV IR Sbjct: 1 MKFSEYRYERPDVKAFEQKFKEQLNAFTSAGTYEEQDEAMTRINKLRSEMDTLSQLVYIR 60 Query: 73 HSINTEDEFYKAEQEYMDEAGPVIQEYVTDFYRALVQSRFRGEFEQEWGTQLLQIAEISL 132 HSI+T DEFYKAEQ++ DE GPVIQEY+TD+YRALV S+FR + E +WG QL Q+AE+SL Sbjct: 61 HSIDTNDEFYKAEQDFFDENGPVIQEYITDYYRALVDSKFRAQLEDKWGRQLFQLAELSL 120 Query: 133 RTFSPEIIEDLQLENKLSTEYSQIIASAKIPFEGEERTLPQLAPFELSTDRGMRKRASEA 192 +TFSPEIIEDLQ ENKL+TEY+++IASAKI FEGEERTL QL PF+ STDR MRKRA EA Sbjct: 121 KTFSPEIIEDLQQENKLTTEYAKLIASAKIQFEGEERTLSQLIPFQQSTDRDMRKRAMEA 180 Query: 193 RYQFMAEHEAEFDRIFDELVKVRTGIAKKLGYNSFVELGYDRMLRTDYNAEMVANFRKQV 252 FMAE+EA FDRI+D+LVKVRT IAKKLG+N++VELGY RM RTDYNAEMVANFR QV Sbjct: 181 SSGFMAENEATFDRIYDDLVKVRTKIAKKLGFNNYVELGYARMARTDYNAEMVANFRNQV 240 Query: 253 QDYIVPVSRKLKER 266 ++IVPV+ KLKER Sbjct: 241 LEHIVPVASKLKER 254 >B1D716.1 B1D716_9BACL Oligoendopeptidase, M3 family Length = 564 Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 173/254 (68%), Positives = 211/254 (83%), Gaps = 1/254 (0%) Query: 14 MKFSEYRYERPDVSKLKVRFAELLKGLNADS-LEEQRAAFSEINKLRNEFDTMSTLVNIR 72 MKF+EYRYERP+V+ + +F ELL NA S EEQ AA + +NKLR+EFDTM + +IR Sbjct: 1 MKFNEYRYERPEVASFEKQFKELLSAFNAASRFEEQDAAMTGLNKLRSEFDTMQQIASIR 60 Query: 73 HSINTEDEFYKAEQEYMDEAGPVIQEYVTDFYRALVQSRFRGEFEQEWGTQLLQIAEISL 132 HSI+T DEFYKAEQ++ DE GPV+QEY+TD+YRALV S +R E E +WG QL Q+AE+SL Sbjct: 61 HSIDTNDEFYKAEQDFFDENGPVVQEYITDYYRALVNSAYRSELEAKWGRQLFQLAELSL 120 Query: 133 RTFSPEIIEDLQLENKLSTEYSQIIASAKIPFEGEERTLPQLAPFELSTDRGMRKRASEA 192 +TFSPE+IEDLQ ENKLSTEY+++IASAKI F+GEERTL QL+PF+ STDR +RK+ASEA Sbjct: 121 KTFSPEVIEDLQQENKLSTEYTKLIASAKILFDGEERTLSQLSPFQQSTDRSVRKQASEA 180 Query: 193 RYQFMAEHEAEFDRIFDELVKVRTGIAKKLGYNSFVELGYDRMLRTDYNAEMVANFRKQV 252 FM+ +EAEFDRI+DELVKVRT IAKKLG+ +FVELGY RM RTDY AEMVANFR QV Sbjct: 181 SSGFMSGNEAEFDRIYDELVKVRTRIAKKLGFKNFVELGYARMSRTDYTAEMVANFRNQV 240 Query: 253 QDYIVPVSRKLKER 266 ++IVPV+ KLKER Sbjct: 241 LEHIVPVASKLKER 254 >C5D7V8.1 C5D7V8_9BACI Oligoendopeptidase, M3 family Length = 564 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 155/254 (61%), Positives = 199/254 (78%), Gaps = 1/254 (0%) Query: 14 MKFSEYRYERPDVSKLKVRFAELLKGLN-ADSLEEQRAAFSEINKLRNEFDTMSTLVNIR 72 MKFSE+RYERP++ KLK F + L+ A S+EEQ A EINKLRN+F TM+ + IR Sbjct: 1 MKFSEFRYERPNIEKLKTSFQQALQSFQKASSVEEQDEAMKEINKLRNDFSTMAQICYIR 60 Query: 73 HSINTEDEFYKAEQEYMDEAGPVIQEYVTDFYRALVQSRFRGEFEQEWGTQLLQIAEISL 132 H+I+T DEFYK EQ++ DE P+++ V D+YRALV S FR + E++WG QL +AE L Sbjct: 61 HTIDTNDEFYKQEQDFFDEVEPIVKGLVNDYYRALVSSPFRSQLEEKWGKQLFALAETEL 120 Query: 133 RTFSPEIIEDLQLENKLSTEYSQIIASAKIPFEGEERTLPQLAPFELSTDRGMRKRASEA 192 +T+SP+I+EDLQLENKL++EY++++ASAKI FEGEERTL QL PF S DR MRKRASEA Sbjct: 121 KTYSPDIVEDLQLENKLTSEYTKLVASAKIFFEGEERTLAQLQPFVESPDREMRKRASEA 180 Query: 193 RYQFMAEHEAEFDRIFDELVKVRTGIAKKLGYNSFVELGYDRMLRTDYNAEMVANFRKQV 252 R+ F EH +FD I+D+LVKVRT IA+KLG+ +FVELGY R+ RTDYNAEMVA FRKQV Sbjct: 181 RFAFFQEHGEKFDEIYDQLVKVRTAIAQKLGFKNFVELGYARLGRTDYNAEMVAKFRKQV 240 Query: 253 QDYIVPVSRKLKER 266 + +IVP++ KL+ER Sbjct: 241 EKHIVPIAVKLRER 254 >Q4W803.1 Q4W803_9BACI Oligopeptidase Length = 564 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 154/254 (60%), Positives = 198/254 (77%), Gaps = 1/254 (0%) Query: 14 MKFSEYRYERPDVSKLKVRFAELLKGLN-ADSLEEQRAAFSEINKLRNEFDTMSTLVNIR 72 MKFSE+RYERP++ KLK F + L+ A + EEQ A EIN+LRN+F TM+ + IR Sbjct: 1 MKFSEFRYERPNIEKLKASFQQALQSFQKASNAEEQNEAMKEINQLRNDFSTMAQICYIR 60 Query: 73 HSINTEDEFYKAEQEYMDEAGPVIQEYVTDFYRALVQSRFRGEFEQEWGTQLLQIAEISL 132 H+I+T DEFYK EQ++ DE P+++ V D+YRALV S FR + E +WG QL +AE L Sbjct: 61 HTIDTNDEFYKQEQDFFDEVEPIVKGLVNDYYRALVSSPFRSQLEGKWGKQLFALAEAEL 120 Query: 133 RTFSPEIIEDLQLENKLSTEYSQIIASAKIPFEGEERTLPQLAPFELSTDRGMRKRASEA 192 +T+SP+I+EDLQLENKL++EY++++ASAKI FEGEERTL QL PF S DR MRKRASEA Sbjct: 121 KTYSPDIVEDLQLENKLTSEYTKLVASAKIFFEGEERTLAQLQPFVESPDRDMRKRASEA 180 Query: 193 RYQFMAEHEAEFDRIFDELVKVRTGIAKKLGYNSFVELGYDRMLRTDYNAEMVANFRKQV 252 R+ F EHE +FD I+D+LVKVRT IA+KLG+ +FVELGY R+ RTDYNAEMVA FRKQV Sbjct: 181 RFTFFQEHEEKFDEIYDQLVKVRTAIAQKLGFKNFVELGYARLGRTDYNAEMVAKFRKQV 240 Query: 253 QDYIVPVSRKLKER 266 + +IVP++ KL+ER Sbjct: 241 EKHIVPIAVKLRER 254 >A7GMM9.1 A7GMM9_BACCN Oligoendopeptidase, M3 family Length = 564 Score = 301 bits (772), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 146/254 (57%), Positives = 190/254 (74%), Gaps = 1/254 (0%) Query: 14 MKFSEYRYERPDVSKLKVRFAELLKGL-NADSLEEQRAAFSEINKLRNEFDTMSTLVNIR 72 M F EY Y+RPD+ + + F L+ A ++EEQ+ A IN++RN+F TMSTL +IR Sbjct: 1 MSFKEYEYKRPDIEEFQTNFTAALERFEKAKTVEEQKEAIGFINRIRNDFGTMSTLCSIR 60 Query: 73 HSINTEDEFYKAEQEYMDEAGPVIQEYVTDFYRALVQSRFRGEFEQEWGTQLLQIAEISL 132 HSI+T D FYK EQ++ DE PV Q YVT +Y+AL+ S FR E E +G QL +AE + Sbjct: 61 HSIDTTDTFYKEEQDFFDEYEPVAQGYVTKYYKALLSSPFRAELEDYYGNQLFSLAECDV 120 Query: 133 RTFSPEIIEDLQLENKLSTEYSQIIASAKIPFEGEERTLPQLAPFELSTDRGMRKRASEA 192 +T+S E+++DLQ+ENKLS++Y+Q++ASAKIPF+GEERTL QL PF +R RK+ASE Sbjct: 121 KTYSDEVVKDLQIENKLSSQYTQLLASAKIPFQGEERTLSQLIPFMQGNERDTRKQASEV 180 Query: 193 RYQFMAEHEAEFDRIFDELVKVRTGIAKKLGYNSFVELGYDRMLRTDYNAEMVANFRKQV 252 Y F+AEHE DRI+DELVKVRT IAK LG+ +FVELGY RM RTDYNAEMVA++RKQV Sbjct: 181 YYGFLAEHEEALDRIYDELVKVRTKIAKALGFKNFVELGYARMYRTDYNAEMVASYRKQV 240 Query: 253 QDYIVPVSRKLKER 266 DYIVPV+ +L+ R Sbjct: 241 LDYIVPVATELRNR 254 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,455,231,962 Number of extensions: 54484843 Number of successful extensions: 173441 Number of sequences better than 1.0e-05: 304 Number of HSP's gapped: 173251 Number of HSP's successfully gapped: 304 Length of query: 278 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 144 Effective length of database: 1,798,280,193 Effective search space: 258952347792 Effective search space used: 258952347792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)