BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0197.0017.p (251 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K943.1 B3K943_9BACI Regulatory protein MerR 254 6e-66 A6LZ12.1 A6LZ12_CLOB8 Putative transcriptional regulator, MerR f... 221 3e-56 Q24RU3.1 Q24RU3_DESHY Putative uncharacterized protein 218 5e-55 B8FR87.1 B8FR87_DESHD Transcriptional regulator, MerR family 218 5e-55 Q65NF2.1 Q65NF2_BACLD Transcriptional regulator (MerR family) 211 7e-53 >B3K943.1 B3K943_9BACI Regulatory protein MerR Length = 249 Score = 254 bits (648), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 130/239 (54%), Positives = 162/239 (67%), Gaps = 1/239 (0%) Query: 1 VLYTVKEVAVLSGTTVKTLHHYHKTGLLVPAEISEAGYRLYGMAELERLQQIMLYKELDF 60 +LYTVKEV+ LSG T+KTLHHYHK GLL PAEIS+AGYRLYG AELE LQQI Y+E+DF Sbjct: 1 MLYTVKEVSELSGVTIKTLHHYHKIGLLQPAEISDAGYRLYGAAELELLQQIRFYREMDF 60 Query: 61 TLEQIGQLLKEEPDRLSILVXXXXXXXXXXXXIDMIIETLRKSVTSRERGEPMKDTEMFK 120 LEQI +L++E PDRLSIL ++ +++TLR+S+ G M+ EMFK Sbjct: 61 PLEQIKELMEETPDRLSILTEQEKLLLARWNRLERVLQTLRQSIEYVGGGRRMEPEEMFK 120 Query: 121 GLASEQEWKAALQEQGEHLKETYDYDLSAKGAPIDVQHMNDXXXXXXXXXXXXXXXLRSG 180 G SE+EWK AL EQ +HLKE Y+ DL GAP+DV +MN+ L++G Sbjct: 121 GFDSEEEWKDALAEQNQHLKERYEVDL-LDGAPMDVPNMNEQAKEAADFMAGMANALKTG 179 Query: 181 VKAGDVSTAELIRKHLDFMGEHGHPASAADFAAQNRFFLGDDFHLRMLEGQQTGLAYYL 239 ++ D + I +HL FM E GH +AADFA Q +FFL D+FHLRMLE QQTGLAYYL Sbjct: 180 IRHNDERIRDSIHEHLRFMNEQGHAFTAADFAGQTKFFLHDEFHLRMLEEQQTGLAYYL 238 >A6LZ12.1 A6LZ12_CLOB8 Putative transcriptional regulator, MerR family Length = 248 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 113/239 (47%), Positives = 146/239 (61%), Gaps = 2/239 (0%) Query: 1 VLYTVKEVAVLSGTTVKTLHHYHKTGLLVPAEISEAGYRLYGMAELERLQQIMLYKELDF 60 +LYTVKEVA +G TVKTLHHYHK GLL P E++EAGYRLYG ELERLQQI+ Y+ELDF Sbjct: 1 MLYTVKEVAKFTGVTVKTLHHYHKIGLLFPHEVNEAGYRLYGEKELERLQQILFYRELDF 60 Query: 61 TLEQIGQLLKEEPDRLSILVXXXXXXXXXXXXIDMIIETLRKSVTSRERGEPMKDTEMFK 120 +L I + L++EP+RL LV D +++T+ +S+ +RGE M + MFK Sbjct: 61 SLSDIKKALEDEPNRLECLVKQQELLIARKHRTDRLLKTINESIVLGKRGEIMDKSAMFK 120 Query: 121 GLASEQEWKAALQEQGEHLKETYDYDLSAKGAPIDVQHMNDXXXXXXXXXXXXXXXLRSG 180 G E EWK AL Q +LK Y YD+ V +MN+ L++G Sbjct: 121 GFNKE-EWKDALSNQKNYLKGKYGYDMPEVDEA-QVNNMNEAAMEAQQFMNYIKDALKNG 178 Query: 181 VKAGDVSTAELIRKHLDFMGEHGHPASAADFAAQNRFFLGDDFHLRMLEGQQTGLAYYL 239 VKA D S E ++ H+ F+ +HGH A F AQ +FFL DDFH +LE Q TGL+YYL Sbjct: 179 VKANDKSVQETLKSHIKFLNDHGHRVDAKSFVAQTKFFLDDDFHRSILENQLTGLSYYL 237 >Q24RU3.1 Q24RU3_DESHY Putative uncharacterized protein Length = 250 Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 148/240 (61%), Gaps = 2/240 (0%) Query: 1 VLYTVKEVAVLSGTTVKTLHHYHKTGLLVPAEISEAGYRLYGMAELERLQQIMLYKELDF 60 +LYTVKEVA L+G TVKTLHHYHK GLL P EI++AGYRLYG ELERLQQI+ Y+ELDF Sbjct: 2 MLYTVKEVAGLAGVTVKTLHHYHKIGLLKPCEITDAGYRLYGAEELERLQQILFYRELDF 61 Query: 61 TLEQIGQLLKEEPDRLSILVXXXXXXXXXXXXIDMIIETLRKSVTSRERGEPMKDTEMFK 120 +L I + L+++P RL L +D +++T+ +S+ ++GE M+ + MF+ Sbjct: 62 SLSDIQKALEDQPGRLMCLTKQQELLIARRQRLDCLLKTIGESIVLTKKGEIMEKSAMFQ 121 Query: 121 GLASEQEWKAALQEQGEHLKETYDYDLSAKGAPIDVQHMNDXXXXXXXXXXXXXXXLRSG 180 GL ++ W AL EQ ++LK+ Y Y+L K Q MND LR+G Sbjct: 122 GLNAD-AWNTALAEQSQYLKDHYGYELP-KVETEQAQEMNDSAAEAKQFMDFLAEALRAG 179 Query: 181 VKAGDVSTAELIRKHLDFMGEHGHPASAADFAAQNRFFLGDDFHLRMLEGQQTGLAYYLS 240 K D + I +HL F+ +HGHP A FAAQ RFFL DDFH MLE QQ GL YYL Sbjct: 180 WKGNDPRLQKKIEEHLAFLKDHGHPVDAQTFAAQARFFLEDDFHRGMLESQQLGLCYYLC 239 >B8FR87.1 B8FR87_DESHD Transcriptional regulator, MerR family Length = 250 Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 148/240 (61%), Gaps = 2/240 (0%) Query: 1 VLYTVKEVAVLSGTTVKTLHHYHKTGLLVPAEISEAGYRLYGMAELERLQQIMLYKELDF 60 +LYTVKEVA L+G TVKTLHHYHK GLL P EI++AGYRLYG ELERLQQI+ Y+ELDF Sbjct: 2 MLYTVKEVAGLAGVTVKTLHHYHKIGLLKPCEITDAGYRLYGAEELERLQQILFYRELDF 61 Query: 61 TLEQIGQLLKEEPDRLSILVXXXXXXXXXXXXIDMIIETLRKSVTSRERGEPMKDTEMFK 120 +L I + L+++P RL L +D +++T+ +S+ ++GE M+ + MF+ Sbjct: 62 SLSDIQKALEDQPGRLMCLTKQQELLIARRQRLDCLLKTIGESIVLTKKGEIMEKSAMFQ 121 Query: 121 GLASEQEWKAALQEQGEHLKETYDYDLSAKGAPIDVQHMNDXXXXXXXXXXXXXXXLRSG 180 GL ++ W AL EQ ++LK+ Y Y+L K Q MND LR+G Sbjct: 122 GLNAD-AWNTALAEQSQYLKDHYGYELP-KVETEQAQEMNDSAAEAKQFMDFLAEALRAG 179 Query: 181 VKAGDVSTAELIRKHLDFMGEHGHPASAADFAAQNRFFLGDDFHLRMLEGQQTGLAYYLS 240 K D + I +HL F+ +HGHP A FAAQ RFFL DDFH MLE QQ GL YYL Sbjct: 180 WKGNDPRLQKKIEEHLAFLKDHGHPVDAQTFAAQARFFLEDDFHRGMLESQQLGLCYYLC 239 >Q65NF2.1 Q65NF2_BACLD Transcriptional regulator (MerR family) Length = 242 Score = 211 bits (536), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 111/239 (46%), Positives = 145/239 (60%), Gaps = 6/239 (2%) Query: 1 VLYTVKEVAVLSGTTVKTLHHYHKTGLLVPAEISEAGYRLYGMAELERLQQIMLYKELDF 60 +LYTVKEVA L+ T+KTL+HYHK GLL PAE+++AGYRLYG+ ELERLQ I+ Y+EL+F Sbjct: 1 MLYTVKEVARLANITIKTLYHYHKIGLLCPAEVTDAGYRLYGVKELERLQHILFYRELEF 60 Query: 61 TLEQIGQLLKEEPDRLSILVXXXXXXXXXXXXIDMIIETLRKSVTSRERGEPMKDTEMFK 120 L+ I Q+L + DRL+IL I +I T+ S+ +GE M + MFK Sbjct: 61 PLKAIKQILDGKADRLTILSEQKRLFTARLDRIKQLISTIDLSIQQAGKGEAMDQSSMFK 120 Query: 121 GLASEQEWKAALQEQGEHLKETYDYDLSAKGAPIDVQHMNDXXXXXXXXXXXXXXXLRSG 180 G +S +EW+ AL EQ +LKE YD DL KG P+ + MN+ LR G Sbjct: 121 GFSSSREWEDALAEQNRYLKEAYDVDL-LKGEPVIAEEMNEKAEEAARFMNGMAEALRDG 179 Query: 181 VKAGDVSTAELIRKHLDFMGEHGHPASAADFAAQNRFFLGDDFHLRMLEGQQTGLAYYL 239 VK I++HL F+G + DF +Q RFF+ DDFH MLE QQTGL+YYL Sbjct: 180 VKHDHEQVKTAIKRHLKFLG-----ITPDDFQSQTRFFIEDDFHRGMLENQQTGLSYYL 233 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,196,355,119 Number of extensions: 40593140 Number of successful extensions: 108517 Number of sequences better than 1.0e-05: 758 Number of HSP's gapped: 108997 Number of HSP's successfully gapped: 758 Length of query: 251 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 119 Effective length of database: 1,817,122,223 Effective search space: 216237544537 Effective search space used: 216237544537 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)