BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0197.0015.p (330 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q88JP7.1 Q88JP7_PSEPK Oxidoreductase, putative 106 3e-21 A5W541.1 A5W541_PSEP1 Oxidoreductase domain protein 105 6e-21 B0KIH8.1 B0KIH8_PSEPG Oxidoreductase domain protein 100 2e-19 B1J7C2.1 B1J7C2_PSEPW Oxidoreductase domain protein 94 1e-17 Q5LEV0.1 Q5LEV0_BACFN Putative GFO/IDH/MocA-family oxidoreductase 92 7e-17 >Q88JP7.1 Q88JP7_PSEPK Oxidoreductase, putative Length = 350 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 140/304 (46%), Gaps = 42/304 (13%) Query: 52 GLP-YSDYRKMLQDTECDGVVVVAQPQDQTALVLDCIHAGKNVYVDKPLGWNGPXXXXXX 110 G+P ++D+R+ML+ + V+V A LDC+ AG V V+KP+G N Sbjct: 49 GVPCFADHRQMLEQVRPEAVIVANPNTLHVATALDCVEAGVPVLVEKPVGVNLDEVRALV 108 Query: 111 XXXXXXGVVLMVGFMKRYAPVYLKLKELIAEGTLGAARSFQARFAVD------STPFCKD 164 GV ++VG +R+ P+ K ++I EG LG + A + + TP+ ++ Sbjct: 109 EASRRRGVPVLVGHHRRHNPLIAKAHQVINEGKLGRLINVTALWQLQKPDSYFETPWRRE 168 Query: 165 E-EQFLKLAAIHIVDLLRFLFGEAVQISGFTNND-----NERIAQSISLKFANGVVGSVY 218 FL IH +DLLR+L GE VQ+ FT ND NE A ++ L+FANG +GS+ Sbjct: 169 PGAGFLLTNLIHDLDLLRYLCGEVVQVQAFTRNDVRGFANEDSA-AVLLQFANGALGSLT 227 Query: 219 FAGMSA--WSRE---SESLTVTFDHGFVC---ADEVVKLSV------HHSLAGSGLPWQS 264 + A WS E ES G C A LS+ H++ AGSG W + Sbjct: 228 GSDAVAAPWSWELDAGESPVYPRQDGQPCYLLAGTQGALSIPQLKRWHYAEAGSG--WHT 285 Query: 265 LAEQDMVFTPSASAMSGGYRDLYLRGFAGEMAHFMKCCREGLTPVSSGRDNVKTMELCDA 324 Q P+ A++ ++ HF++ R P+ D +T+ L +A Sbjct: 286 PLLQSSESIPAGEALT------------LQLQHFVRVARGEQAPLIDAADGGRTLALIEA 333 Query: 325 ILSA 328 I A Sbjct: 334 IRQA 337 >A5W541.1 A5W541_PSEP1 Oxidoreductase domain protein Length = 350 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 139/304 (45%), Gaps = 42/304 (13%) Query: 52 GLP-YSDYRKMLQDTECDGVVVVAQPQDQTALVLDCIHAGKNVYVDKPLGWNGPXXXXXX 110 G+P ++D+R+ML + V+V A LDC+ AG V V+KP+G N Sbjct: 49 GVPCFADHRQMLAHVRPEAVIVANPNNLHVATALDCVEAGVPVLVEKPVGVNLDEVRALV 108 Query: 111 XXXXXXGVVLMVGFMKRYAPVYLKLKELIAEGTLGAARSFQARFAVD------STPFCKD 164 GV ++VG +R+ P+ K ++I EG LG + A + + TP+ ++ Sbjct: 109 EASRRRGVPVLVGHHRRHNPLITKAHQVINEGKLGRLINVTALWQLQKPDSYFETPWRRE 168 Query: 165 E-EQFLKLAAIHIVDLLRFLFGEAVQISGFTNND-----NERIAQSISLKFANGVVGSVY 218 FL IH +DLLR+L GE VQ+ FT ND NE A ++ L+FANG +GS+ Sbjct: 169 PGAGFLLTNLIHDLDLLRYLCGEVVQVQAFTRNDVRGFANEDSA-AVLLQFANGALGSLT 227 Query: 219 FAGMSA--WSRE---SESLTVTFDHGFVC---ADEVVKLSV------HHSLAGSGLPWQS 264 + A WS E ES G C A LS+ H++ AGSG W + Sbjct: 228 GSDAVAAPWSWELDAGESPVYPRQDGQPCYLLAGTQGALSIPQLKRWHYAEAGSG--WHT 285 Query: 265 LAEQDMVFTPSASAMSGGYRDLYLRGFAGEMAHFMKCCREGLTPVSSGRDNVKTMELCDA 324 Q P+ A++ ++ HF++ R P+ D +T+ L +A Sbjct: 286 PLLQSSESIPAGEALT------------LQLQHFVRVARGEQAPLIDAADGGRTLALIEA 333 Query: 325 ILSA 328 I A Sbjct: 334 IRQA 337 >B0KIH8.1 B0KIH8_PSEPG Oxidoreductase domain protein Length = 350 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 98/351 (27%), Positives = 156/351 (44%), Gaps = 46/351 (13%) Query: 5 KLSFIGAGFHASTNIYPSAIQAGAEIVAVATRKLERSRAALQRFGSSGLP-YSDYRKMLQ 63 +++ IGAG + A++ AVA + A + G+P ++D+R+ML+ Sbjct: 6 RIALIGAGIMGRQHYQHLRNVPQAQLCAVADPGPQAEAFAAE----CGVPCFADHRQMLE 61 Query: 64 DTECDGVVVVAQPQDQTALVLDCIHAGKNVYVDKPLGWNGPXXXXXXXXXXXXGVVLMVG 123 + V++ A LDC+ AG V V+KP+G + V ++VG Sbjct: 62 RVRPEAVIIANPNNQHVATALDCVEAGVPVLVEKPVGVHLDEARALVEASHRRNVPVLVG 121 Query: 124 FMKRYAPVYLKLKELIAEGTLGAARSFQARFAVD------STPFCKDE-EQFLKLAAIHI 176 +R+ P+ K ++I+EG LG + A + + TP+ ++ FL IH Sbjct: 122 HHRRHNPLIAKAHQVISEGKLGRLINVTALWQLQKPDSYFETPWRREPGAGFLLTNLIHD 181 Query: 177 VDLLRFLFGEAVQISGFTNND-----NERIAQSISLKFANGVVGSVYFAGMSA--WSRE- 228 +DLLR L GE VQ+ FT ND NE A ++ L+FANG +GS+ + A WS E Sbjct: 182 LDLLRHLCGEVVQVQAFTRNDVRGFANEDSA-AVLLQFANGALGSLTGSDAVAAPWSWEL 240 Query: 229 --SESLTVTFDHGFVC---ADEVVKLSV------HHSLAGSGLPWQSLAEQDMVFTPSAS 277 ES G C A LS+ H++ AGSG W + Q P+ Sbjct: 241 DSGESPIYPRQDGQPCYMLAGTQGALSIPQLKRWHYAEAGSG--WHTPLLQCEESIPAGE 298 Query: 278 AMSGGYRDLYLRGFAGEMAHFMKCCREGLTPVSSGRDNVKTMELCDAILSA 328 A++ ++ HF++ R P+ D +T+ L +AI A Sbjct: 299 ALT------------LQLQHFVRVARGEQAPLIDAADGGRTLALIEAIRQA 337 >B1J7C2.1 B1J7C2_PSEPW Oxidoreductase domain protein Length = 350 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 133/298 (44%), Gaps = 37/298 (12%) Query: 55 YSDYRKMLQDTECDGVVVVAQPQDQTALVLDCIHAGKNVYVDKPLGWNGPXXXXXXXXXX 114 ++D+R+MLQ + V+V A LDC+ AG V V+KP+G + Sbjct: 53 FADHRQMLQTVRPEAVIVANPNNLHVATALDCVEAGVPVLVEKPIGVHLDEVRALVEASR 112 Query: 115 XXGVVLMVGFMKRYAPVYLKLKELIAEGTLGAARSFQARFAVDS------TPFCKDE-EQ 167 V ++VG +R+ P+ + +IAEG LG + A + + TP+ ++ Sbjct: 113 RCRVPVLVGHHRRHNPLIASARGVIAEGALGRLVNVTALWQLQKPDSYFDTPWRREPGAG 172 Query: 168 FLKLAAIHIVDLLRFLFGEAVQISGFTNND-----NERIAQSISLKFANGVVGSVY---- 218 FL IH +DLLR+L GE VQ+ FT N NE A ++ L+FANG +GS+ Sbjct: 173 FLLTNLIHDLDLLRYLCGEVVQVQAFTRNQVRGFANEDSA-AVLLEFANGALGSLTGSDA 231 Query: 219 FAGMSAW---SRESESLTVTFDHG-FVCADEVVKLSV----HHSLAGSGLPWQSLAEQDM 270 A +W S ES D ++ A LS+ H A + W + Q Sbjct: 232 VAAPWSWELSSGESPVYPRQADQPCYLLAGTRGALSIPQLKHWQYAEANSGWHTPLLQSE 291 Query: 271 VFTPSASAMSGGYRDLYLRGFAGEMAHFMKCCREGLTPVSSGRDNVKTMELCDAILSA 328 P+ +A++ ++ HF++ R P++ D +T+ L +AI A Sbjct: 292 AGIPAGAALT------------LQLQHFVRVARGQEAPLTDAADGGRTLALIEAIRQA 337 >Q5LEV0.1 Q5LEV0_BACFN Putative GFO/IDH/MocA-family oxidoreductase Length = 328 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 25/262 (9%) Query: 2 NIAKLSFIGAGFHASTNIYPSAIQA-GAEIVAVATRKLERSRAALQRFGSSGLP--YSDY 58 I K FIG G P+ + G+++VAV +R ++++A + +P Y D Sbjct: 4 KIIKWGFIGCGEVTKYKSGPAFQKVEGSKVVAVMSRDGKKAKAYAK---ERNIPKWYDDA 60 Query: 59 RKMLQDTECDGVVVVAQPQDQTALVLDCIHAGKNVYVDKPLGWNGPXXXXXXXXXXXXGV 118 ++++ D E + V + P + + AGK VY++KP+ GV Sbjct: 61 QELIDDPEVNAVYIATPPSSHATYAIMSMKAGKPVYIEKPMAQTYEECARINRISQETGV 120 Query: 119 VLMVGFMKRYAPVYLKLKELIAEGTLGAARSFQARFAVDSTPFCKDEEQ----------- 167 V + +RY P ++K+KEL+ +GT+G + Q RFA + E Sbjct: 121 PCFVAYYRRYLPYFMKVKELVDKGTIGNVINVQIRFAQPPRDLDYNRENLPWRVQADIAG 180 Query: 168 ---FLKLAAIHIVDLLRFLFGEAVQISGFTNNDN----ERIAQSISLKFANGVVGSVYFA 220 F LA H +DLL+ +FG ++ SG+ +N S +F NG+VGS + Sbjct: 181 GGYFYDLAP-HQIDLLQEMFGCILEASGYKSNRGGLYPAEDTLSACFQFDNGLVGSGSWC 239 Query: 221 GMSAWSRESESLTVTFDHGFVC 242 ++ S + + + D G +C Sbjct: 240 FVAHDSAREDRIEIIGDKGMIC 261 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,777,626,003 Number of extensions: 68531809 Number of successful extensions: 146867 Number of sequences better than 1.0e-05: 788 Number of HSP's gapped: 148196 Number of HSP's successfully gapped: 788 Length of query: 330 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 194 Effective length of database: 1,779,438,163 Effective search space: 345211003622 Effective search space used: 345211003622 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)