BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0197.0012.p (147 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LZQ8.1 A6LZQ8_CLOB8 Response regulator receiver protein 197 2e-49 C0FZH8.1 C0FZH8_9FIRM Putative uncharacterized protein 137 4e-31 C1I2W1.1 C1I2W1_9CLOT Response regulator receiver protein 124 3e-27 A0AHA3.1 A0AHA3_LISW6 Complete genome 114 3e-24 C4CA53.1 C4CA53_9ACTN Response regulator of the LytR/AlgR family 111 2e-23 >A6LZQ8.1 A6LZQ8_CLOB8 Response regulator receiver protein Length = 145 Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 86/130 (66%), Positives = 117/130 (90%), Gaps = 2/130 (1%) Query: 18 LRCNDPDEAVLKLLYSIQAMAASRKLIGMTDLQMHIIDPDEVYYFEAVDHKVFIYCAEKV 77 ++CN+PDE++L+L+YS+++ +S+KLIG TDLQMHII+P +V+YFE+VD+KVFIYC +K+ Sbjct: 18 IKCNEPDESLLQLIYSLKS--SSKKLIGFTDLQMHIINPKDVFYFESVDNKVFIYCKQKI 75 Query: 78 YESRLKLYEIEQAYAHRDFFRASKSTVLNIAKIKSVSPLLYGRFEALLHNGEKVIISRQY 137 ++SRLKLYEIE Y + DFFRASKST++NI+KI+SVSP+ YG+FEALL NGEK+ ISRQY Sbjct: 76 FQSRLKLYEIESEYENSDFFRASKSTIINISKIESVSPIFYGKFEALLQNGEKMFISRQY 135 Query: 138 VPVLRQKLGL 147 VPV ++KLGL Sbjct: 136 VPVFKKKLGL 145 >C0FZH8.1 C0FZH8_9FIRM Putative uncharacterized protein Length = 145 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 93/147 (63%), Gaps = 2/147 (1%) Query: 1 MKITXXXXXXXXXXXXXLRCNDPDEAVLKLLYSIQAMAASRKLIGMTDLQMHIIDPDEVY 60 MKIT ++C + E + LL ++ + K+ G + +H+++PDEVY Sbjct: 1 MKITILDTIPGEEDEIIIKCQNLSEDIQNLLQKLKQ--GNTKIAGHNENGIHLLEPDEVY 58 Query: 61 YFEAVDHKVFIYCAEKVYESRLKLYEIEQAYAHRDFFRASKSTVLNIAKIKSVSPLLYGR 120 YFE VD+KVF C ++VYE R KLY E F RASKS +LN+ K+KS+SP GR Sbjct: 59 YFETVDNKVFACCKKEVYEVREKLYTFEGMLPVESFMRASKSAILNLNKVKSLSPAFGGR 118 Query: 121 FEALLHNGEKVIISRQYVPVLRQKLGL 147 FEA+L NGEK IISRQYVPVL+++LGL Sbjct: 119 FEAVLDNGEKTIISRQYVPVLKERLGL 145 >C1I2W1.1 C1I2W1_9CLOT Response regulator receiver protein Length = 145 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 60/129 (46%), Positives = 90/129 (69%), Gaps = 4/129 (3%) Query: 18 LRCNDPDEAVLKLLYSIQAMAASRKLI-GMTDLQMHIIDPDEVYYFEAVDHKVFIYCAEK 76 + C D+ ++K+ I+ + +I G+ D ++HII P+ V YFE+VD + FIY ++ Sbjct: 18 INCKVIDDNIVKI---IEKLREDENIITGVKDSKVHIIKPENVLYFESVDKRTFIYTKKE 74 Query: 77 VYESRLKLYEIEQAYAHRDFFRASKSTVLNIAKIKSVSPLLYGRFEALLHNGEKVIISRQ 136 VYES L+LYEIE ++ FFRASKST++NI+KI ++ ++ GR E LL N EK+I+SRQ Sbjct: 75 VYESNLRLYEIEDKFSAYHFFRASKSTIINISKISVINTVIGGRVEVLLENKEKLIVSRQ 134 Query: 137 YVPVLRQKL 145 YVP+L+ KL Sbjct: 135 YVPILKAKL 143 >A0AHA3.1 A0AHA3_LISW6 Complete genome Length = 147 Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 59/129 (45%), Positives = 85/129 (65%), Gaps = 6/129 (4%) Query: 18 LRCNDPD-EAVLKLLYSIQAMAASRKLIGMTDLQMHIIDPDEVYYFEAVDHKVFIYCAEK 76 L C+ D E V ++ S++ + +K D + ++++P + YFEAV++K+F+Y E+ Sbjct: 18 LHCHPQDIEKVTNIVLSLEEKISVKK-----DGETYLLEPKVILYFEAVENKIFVYTEEE 72 Query: 77 VYESRLKLYEIEQAYAHRDFFRASKSTVLNIAKIKSVSPLLYGRFEALLHNGEKVIISRQ 136 VYE+ KLYE+E+ + FFR SKS +LNI I+ V+P GRFEA L N EKVIISRQ Sbjct: 73 VYETNWKLYELEKRFDESSFFRCSKSMILNIEWIEKVAPGFNGRFEASLLNNEKVIISRQ 132 Query: 137 YVPVLRQKL 145 Y VL+QKL Sbjct: 133 YAKVLKQKL 141 >C4CA53.1 C4CA53_9ACTN Response regulator of the LytR/AlgR family Length = 146 Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 2/147 (1%) Query: 1 MKITXXXXXXXXXXXXXLRCNDPDEAVLKLLYSIQAMAASRKLIGMTDLQMHIIDPDEVY 60 MKIT + C D VL ++ ++ RK+ G D H+++ +++ Sbjct: 1 MKITIDERPEANDIEVAIVCRRTDRQVLDIVARLRMF--DRKVTGSADGSTHVVNAEDIL 58 Query: 61 YFEAVDHKVFIYCAEKVYESRLKLYEIEQAYAHRDFFRASKSTVLNIAKIKSVSPLLYGR 120 Y E+VD + F Y AE VYE+ L+LYE+E+ DF R +K V+N +I S+ P + GR Sbjct: 59 YVESVDKRTFFYTAEDVYETALRLYEMEERLEGCDFLRVAKGCVVNFRRIASLCPEMNGR 118 Query: 121 FEALLHNGEKVIISRQYVPVLRQKLGL 147 A + NGE+V+ISRQY P +R+KLG+ Sbjct: 119 LVATMDNGEQVVISRQYAPDVRRKLGM 145 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.139 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 703,277,670 Number of extensions: 24368574 Number of successful extensions: 85089 Number of sequences better than 1.0e-05: 121 Number of HSP's gapped: 85388 Number of HSP's successfully gapped: 121 Length of query: 147 Length of database: 3,060,696,203 Length adjustment: 110 Effective length of query: 37 Effective length of database: 2,024,384,553 Effective search space: 74902228461 Effective search space used: 74902228461 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 125 (52.8 bits)