BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0197.0005.p (256 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5D2A3.1 C5D2A3_9BACI DNA polymerase beta domain protein region 240 1e-61 B3KFT7.1 B3KFT7_9BACI DNA polymerase beta domain protein region 238 4e-61 B1DHD3.1 B1DHD3_9BACL DNA polymerase beta domain protein region 228 6e-58 Q5WGK3.1 Q5WGK3_BACSK Putative uncharacterized protein 213 1e-53 C2K0W2.1 C2K0W2_LACRH Streptomycin 3''-adenylyltransferase 175 4e-42 >C5D2A3.1 C5D2A3_9BACI DNA polymerase beta domain protein region Length = 254 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 112/244 (45%), Positives = 160/244 (65%), Gaps = 2/244 (0%) Query: 8 ILDRFTAIFKEELKADLAGIYLHGSLAMGCFNPVGSDIDILVVIRTPLPHYRAARIAQKL 67 IL + T +F EELK +L G+YLHGSLAMGCFNP SDID+LV+++ RIA+KL Sbjct: 6 ILQQLTHLFHEELKENLVGVYLHGSLAMGCFNPKKSDIDLLVIVKDKFDVATKKRIARKL 65 Query: 68 LSLRDEIAN--GLEISVIREAVLASVTCPTPCELHFSDYHRERYRVDADYLCGGYEDADL 125 + + + N G+E+S++ E + PTP ELH+S +RE Y+VD DY+C G ED DL Sbjct: 66 VGIDGTLLNEGGVELSIVLETYVTDFIYPTPFELHYSKLYRETYKVDEDYVCEGMEDPDL 125 Query: 126 ASQIAVAYYRGRTLYGEPLARQYPPVNPSAYLSSILHDIADAAAEIMDNPMYITLNLCRV 185 A+ I V Y+RG TLYG+P+ + P++ Y+ SI++D+ D I+ +P+Y LN+CR Sbjct: 126 AAHIFVTYHRGVTLYGKPIRETFRPIDRQYYVRSIMYDLEDTVNGIIHSPVYYVLNICRA 185 Query: 186 LYYLQEGKIASKREGGEWGTASLPPEFKELVQVCLNQYNGVPEDRQVQPGQWTAFAGYML 245 Y+L+EG +ASK+EGGEW LP +K +VQ CL+ Y+G + +V P Q FA +ML Sbjct: 186 WYFLEEGAVASKQEGGEWAKNKLPKTYKAIVQQCLDDYHGQTDHFRVPPKQLIEFARFML 245 Query: 246 GVID 249 I+ Sbjct: 246 KKIN 249 >B3KFT7.1 B3KFT7_9BACI DNA polymerase beta domain protein region Length = 253 Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 118/251 (47%), Positives = 166/251 (66%), Gaps = 3/251 (1%) Query: 3 IQVEPILDRFTAIFKEELKADLAGIYLHGSLAMGCFNPVGSDIDILVVIRTPLPHYRAAR 62 + + +LD+ +F EEL + L G+YLHGSLAMGCFNP SD+D+LVV + R Sbjct: 1 MDTQSVLDQAVDLFTEELGSHLVGVYLHGSLAMGCFNPEASDVDLLVVAARQPSRDQLRR 60 Query: 63 IAQKLLSLRDEIAN--GLEISVIREAVLASVTCPTPCELHFSDYHRERYRVDADYLCGGY 120 +A KL++L D +AN GLE+S++ E+ L + P P E H+S +HRERY D DYLCGG+ Sbjct: 61 LANKLIALHDGMANQQGLELSLVLESSLRELVYPPPFEFHYSAFHRERYLADDDYLCGGF 120 Query: 121 EDADLASQIAVAYYRGRTLYGEPLARQYPPVNPSAYLSSILHDIADAAAEIMDNPMYITL 180 +DADLA+ V Y+RG LYG+P+ +PPV+ S Y+ +IL D+ A +I +P+Y TL Sbjct: 121 QDADLAAHYTVIYHRGIALYGKPVREVFPPVDRSYYVQAILEDVESAVQDITASPVYYTL 180 Query: 181 NLCRVLYYLQEGKIASKREGGEWGTASLPPEFKELVQVCLNQYN-GVPEDRQVQPGQWTA 239 NLCRVLYYL+EG ++SK+EGGEWG +LP ++ +++ L+QY G + + A Sbjct: 181 NLCRVLYYLREGVVSSKKEGGEWGLRALPSQYHPMIEHALHQYTGGAGKPAESASDGLIA 240 Query: 240 FAGYMLGVIDK 250 FAG ML I K Sbjct: 241 FAGDMLERIRK 251 >B1DHD3.1 B1DHD3_9BACL DNA polymerase beta domain protein region Length = 256 Score = 228 bits (580), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 115/259 (44%), Positives = 167/259 (64%), Gaps = 8/259 (3%) Query: 3 IQVEPILDRFTAIFKEELKADLAGIYLHGSLAMGCFNPVGSDIDILVVIRTPLPHYRAAR 62 + + L + + F+ L +L GIYLHGSLAMGCFNP SDID+++V++ L Sbjct: 1 MDADAFLQKAVSTFEAILSDNLTGIYLHGSLAMGCFNPQKSDIDLILVVKNKLSKEELQL 60 Query: 63 IAQKLLSLRDEI--ANGLEISVIREAVLASVTCPTPCELHFSDYHRERYRVDADYLCGGY 120 + + L L ++ +NG+E+SVI E+ PTP E H+S+YHRERY+ + YLCGG+ Sbjct: 61 MTKHALLLDHDLPGSNGIELSVILESYARDFVYPTPFEYHYSEYHRERYQSEPGYLCGGF 120 Query: 121 EDADLASQIAVAYYRGRTLYGEPLARQYPPVNPSAYLSSILHDIADAAAEIMDNPMYITL 180 ED DLA+ + V YYRG+TL G P+ + PV + Y+ SIL DI++A+ EI D P+Y +L Sbjct: 121 EDPDLAAHLTVIYYRGKTLRGVPIPELFKPVESNYYIQSILGDISEASKEITDLPVYYSL 180 Query: 181 NLCRVLYYLQEGKIASKREGGEWGTASLPPEFKELVQVCLNQYNG---VPEDRQVQPGQW 237 NLCRVL+YL+EG+++SK+EGGEWG LP ++ +++ CL+ Y G +PE R +P + Sbjct: 181 NLCRVLFYLREGEVSSKQEGGEWGLRVLPSKYHAVLRACLDDYLGQGNLPE-RDERP--F 237 Query: 238 TAFAGYMLGVIDKKAAGDA 256 FA YM I K + G Sbjct: 238 IEFAEYMQAEIKKASKGSG 256 >Q5WGK3.1 Q5WGK3_BACSK Putative uncharacterized protein Length = 254 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 103/252 (40%), Positives = 148/252 (58%), Gaps = 4/252 (1%) Query: 1 MNIQVEPILDRFTAIFKEELKADLAGIYLHGSLAMGCFNPVGSDIDILVVIRTPLPHYRA 60 MN QV +LD+ T++ K++L L GIYLHGS+AMGCFNP+ SD+DIL V++ L Sbjct: 1 MNQQV--VLDKVTSLLKKKLSGSLIGIYLHGSMAMGCFNPLQSDVDILAVVKEKLSVDTY 58 Query: 61 ARIAQKLLSLRDE--IANGLEISVIREAVLASVTCPTPCELHFSDYHRERYRVDADYLCG 118 +IA KL+ L +E + G EIS++ E PTP E H+S +H+ +Y D Y CG Sbjct: 59 RKIANKLIRLEEEWKMVRGFEISIVLETYTVDFVYPTPFEFHYSSFHKVKYLTDETYFCG 118 Query: 119 GYEDADLASQIAVAYYRGRTLYGEPLARQYPPVNPSAYLSSILHDIADAAAEIMDNPMYI 178 GYED DLA+ V Y RG L+G+P+ + ++ + Y+ SI D+ A I+DNP+Y Sbjct: 119 GYEDPDLAAHFVVTYNRGSVLFGKPIKEVFKAIDHNYYIDSIKSDVNGAFEGIIDNPVYY 178 Query: 179 TLNLCRVLYYLQEGKIASKREGGEWGTASLPPEFKELVQVCLNQYNGVPEDRQVQPGQWT 238 LNL RVL Y++E I+SK+E GEW LP ++K + CL +Y E + Sbjct: 179 VLNLARVLLYVRESAISSKKEAGEWALNELPNQYKYTIAQCLAKYENGLETLNLDEDMLL 238 Query: 239 AFAGYMLGVIDK 250 + YM I++ Sbjct: 239 NYTEYMFKEIEQ 250 >C2K0W2.1 C2K0W2_LACRH Streptomycin 3''-adenylyltransferase Length = 268 Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 135/233 (57%), Gaps = 9/233 (3%) Query: 20 LKADLAGIYLHGSLAMGCFNPVGSDIDILVVIRTPLPHYRAARIA----QKLLSLRDEIA 75 L +L GIYLHGS MGCFNP SD+D LVVI +PL + A I +KL L A Sbjct: 33 LTTNLVGIYLHGSYVMGCFNPAVSDLDFLVVINSPLSNKAKASIMHVTLEKLWPLSP--A 90 Query: 76 NGLEISVIREAVLASVTCPTPCELHFSDYHRERY-RVDADYLCGGY-EDADLASQIAVAY 133 GLE ++ + L++ + P P + HFS H + Y R A Y+ + D DL + + + Sbjct: 91 KGLEFHILLKQDLSTFSEPVPFDFHFSKMHYQEYLREPAKYINQMHGTDPDLTAHLMIVN 150 Query: 134 YRGRTLYGEPLARQYPPVNPSAYLSSILHDIADAAAEIMDNPMYITLNLCRVLYYLQEGK 193 G+ L GEP+A + PV AYL SIL+D+ +A I++ PMY LNLCR L + E Sbjct: 151 QYGQVLTGEPIAEVFAPVPAQAYLKSILYDVGNADTTIINQPMYTILNLCRALAFKNERL 210 Query: 194 IASKREGGEWGTASLPPEFKELVQVCLNQY-NGVPEDRQVQPGQWTAFAGYML 245 + SK GGEW A+L P+++ L+++ LN+Y +G + Q + AFAGYML Sbjct: 211 VTSKSSGGEWALATLSPKWRPLIKLALNEYQSGSGRVSEYQATELKAFAGYML 263 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,564,639,012 Number of extensions: 63328009 Number of successful extensions: 128038 Number of sequences better than 1.0e-05: 454 Number of HSP's gapped: 127869 Number of HSP's successfully gapped: 454 Length of query: 256 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 123 Effective length of database: 1,807,701,208 Effective search space: 222347248584 Effective search space used: 222347248584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)