BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0197.0003.p
         (129 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A0QMG5.1 A0QMG5_MYCA1 Short-chain dehydrogenase/reductase SDR         139   8e-32
B1DM27.1 B1DM27_9BACL Short-chain dehydrogenase/reductase SDR         136   6e-31
C1QTL1.1 C1QTL1_9ACTO Short-chain alcohol dehydrogenase               134   2e-30
Q0SI11.1 Q0SI11_RHOSR Short chain dehydrogenase                       132   9e-30
Q08TM4.1 Q08TM4_STIAU Short-chain dehydrogenase/reductase SDR         129   1e-28

>A0QMG5.1 A0QMG5_MYCA1 Short-chain dehydrogenase/reductase SDR
          Length = 288

 Score =  139 bits (350), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 78/110 (70%)

Query: 15  MSKVWLITGSSRGLGLEIAKAVLNNGDKVVATARRPEQLNSLVQKYGDQVRTTELDVTNX 74
           M K W ITGSSRGLG  +  AVL++GD VVATARRP QL+ LV +YG ++R  ELDVT+ 
Sbjct: 1   MPKTWFITGSSRGLGRALTTAVLDHGDHVVATARRPAQLDELVDRYGPRIRACELDVTDR 60

Query: 75  XXXXXXXXXXLDEFGSLDVIVNNAGYANSSPIEETPDEDFRAQIEANLFG 124
                     +  FG +DV+VNNAGYANS+P+EE  D+DFRAQ+E N FG
Sbjct: 61  AAARRAIAAAVTAFGRIDVVVNNAGYANSAPVEEVSDDDFRAQVETNFFG 110


>B1DM27.1 B1DM27_9BACL Short-chain dehydrogenase/reductase SDR
          Length = 293

 Score =  136 bits (343), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 67/110 (60%), Positives = 80/110 (72%)

Query: 15  MSKVWLITGSSRGLGLEIAKAVLNNGDKVVATARRPEQLNSLVQKYGDQVRTTELDVTNX 74
           MSKVWLITGSSRG G  +A+AVL +GD++VATARRPEQL  L  +YG QVR   LDVT+ 
Sbjct: 1   MSKVWLITGSSRGFGRSLAEAVLASGDRLVATARRPEQLADLEARYGSQVRLVPLDVTSY 60

Query: 75  XXXXXXXXXXLDEFGSLDVIVNNAGYANSSPIEETPDEDFRAQIEANLFG 124
                     ++ FG LDV+VNNAGY N S IE+TP EDFRAQ+E NL+G
Sbjct: 61  EQAEVAVRTAVEAFGRLDVLVNNAGYGNVSSIEDTPMEDFRAQVETNLWG 110


>C1QTL1.1 C1QTL1_9ACTO Short-chain alcohol dehydrogenase
          Length = 279

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 79/110 (71%)

Query: 15  MSKVWLITGSSRGLGLEIAKAVLNNGDKVVATARRPEQLNSLVQKYGDQVRTTELDVTNX 74
           M++ WLITG+SRG G  +A+AVL++GD+V+ATARRPEQL  LV +YG  VRT  LDVT+ 
Sbjct: 1   MARTWLITGASRGFGRGLAEAVLDSGDQVLATARRPEQLADLVTRYGALVRTAALDVTDV 60

Query: 75  XXXXXXXXXXLDEFGSLDVIVNNAGYANSSPIEETPDEDFRAQIEANLFG 124
                     + EFG LDV+VNNAG+ANS PIEE  + DFR Q EAN FG
Sbjct: 61  EAARAAVAAAVGEFGRLDVVVNNAGFANSGPIEEMAEADFRGQFEANFFG 110


>Q0SI11.1 Q0SI11_RHOSR Short chain dehydrogenase
          Length = 279

 Score =  132 bits (332), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 78/110 (70%)

Query: 15  MSKVWLITGSSRGLGLEIAKAVLNNGDKVVATARRPEQLNSLVQKYGDQVRTTELDVTNX 74
           M+K WL+TGSSRG G E+A AVL +GD VVATAR+PEQL  LV  YGD+VR   LDVT+ 
Sbjct: 1   MAKTWLVTGSSRGFGRELATAVLGSGDNVVATARQPEQLTDLVDTYGDRVRAVALDVTDA 60

Query: 75  XXXXXXXXXXLDEFGSLDVIVNNAGYANSSPIEETPDEDFRAQIEANLFG 124
                     + EFG LDV+VNNAGYANS PIEE  DEDFR QI+ N FG
Sbjct: 61  AAARAAVATAVGEFGGLDVVVNNAGYANSVPIEEMDDEDFRQQIDTNFFG 110


>Q08TM4.1 Q08TM4_STIAU Short-chain dehydrogenase/reductase SDR
          Length = 317

 Score =  129 bits (323), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/116 (56%), Positives = 79/116 (68%)

Query: 9   LKEIIMMSKVWLITGSSRGLGLEIAKAVLNNGDKVVATARRPEQLNSLVQKYGDQVRTTE 68
           L   + MSKVWLITGSSRGLG E+AKAVL  G ++VATAR+PE L SLV +YG++VR   
Sbjct: 18  LPRNVPMSKVWLITGSSRGLGRELAKAVLAAGHRLVATARKPEDLQSLVAQYGERVRAVG 77

Query: 69  LDVTNXXXXXXXXXXXLDEFGSLDVIVNNAGYANSSPIEETPDEDFRAQIEANLFG 124
           LDV                FG LDV+VNNAGYAN + IE+  ++DFRAQIE N FG
Sbjct: 78  LDVAEPAAARAAVAVATSAFGRLDVVVNNAGYANVNSIEDVAEDDFRAQIETNFFG 133


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 663,431,865
Number of extensions: 20019625
Number of successful extensions: 101129
Number of sequences better than 1.0e-05: 5085
Number of HSP's gapped: 111191
Number of HSP's successfully gapped: 5086
Length of query: 129
Length of database: 3,060,696,203
Length adjustment: 94
Effective length of query: 35
Effective length of database: 2,175,120,793
Effective search space: 76129227755
Effective search space used: 76129227755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)