BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0196.0005.p
         (448 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A2SCN6.1 A2SCN6_METPP Putative alcohol dehydrogenase                   60   5e-07
C4CZ61.1 C4CZ61_9SPHI WD-40 repeat-containing protein                  58   2e-06
Q1IIY3.1 Q1IIY3_ACIBL Pyrrolo-quinoline quinone                        57   5e-06
B1ZZA3.1 B1ZZA3_OPITP Pyrrolo-quinoline quinone                        56   7e-06

>A2SCN6.1 A2SCN6_METPP Putative alcohol dehydrogenase
          Length = 572

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 18/166 (10%)

Query: 85  FSAKNTLYAKNIASGQIRWSYKTG-----EHPQIVTNNSVFFIDNKEQLVKVSASTGKLL 139
           +S    +  KN++   + WSY TG     + P IV N  ++      Q++   A +GK L
Sbjct: 54  YSPLEKINDKNVSKLTLAWSYVTGMSEGHQSPPIVNNGYMYVTTPNNQVIAFEAKSGKEL 113

Query: 140 WKVKVSERPMEI------GGQAQLMNGKVYFANESGGVAAYHPATGKKLWENKKIPMYAG 193
           W+ K  + P E+           L N K+Y A     + A  P TGK+LW++      AG
Sbjct: 114 WRYK-KQIPEELQQLHPTNRGVALYNDKLYLATTDAMLVALDPVTGKELWKSSVGDWKAG 172

Query: 194 ------TLHGEYKGVLVVSSTVDNIRRQFFGLDPATGKQLWRTEGI 233
                  L    K V  VS     +R     LD  TGK+ WRT  I
Sbjct: 173 YYSTLAPLVANGKVVTGVSGGEYGVRGYVIALDAETGKEAWRTYTI 218


>C4CZ61.1 C4CZ61_9SPHI WD-40 repeat-containing protein
          Length = 462

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 89/193 (46%), Gaps = 34/193 (17%)

Query: 61  KWQVATDGIGMYDTTQPVM-NGILYFSAKN-TLYAKNIASGQIRWSYKTGE----HPQIV 114
           +W+ +T G G+  T+ PV+ NG++Y ++K+ TLYA + A G +RW +  G+     P +V
Sbjct: 230 RWKFSTAG-GV--TSSPVVANGLVYTASKDQTLYALDAAMGSLRWKFSAGDKITSSPAVV 286

Query: 115 TNNSVFFIDNKEQLVKVSASTGKLLWKVK----VSERPMEIGGQAQLMNGKVYFANESGG 170
               V+   N   L  + A++G + WK      V+  P        + NG VY  ++   
Sbjct: 287 -GGVVYIGTNDYNLYALDAASGAIKWKFSTGGPVTSSP-------TVANGIVYIGSDDYT 338

Query: 171 VAAYHPATGKKLWE---NKKIPMYAGTLHGEYKGVLVVSSTVDNIRRQFFGLDPATGKQL 227
             A   ATGK+ W+   N +I   A    G           V    + F+ LD ATG   
Sbjct: 339 FYALDIATGKQRWKFSTNGRISASAIVADGAVY--------VGAEDKTFYSLDAATGMLR 390

Query: 228 WR--TEGIYSMVA 238
           W+  T GI S  A
Sbjct: 391 WKFGTGGIISSSA 403


>Q1IIY3.1 Q1IIY3_ACIBL Pyrrolo-quinoline quinone
          Length = 432

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 29/188 (15%)

Query: 67  DGIGMYDTTQPVMNGILYFSAKNT-LYAKNIASGQIRWSYKTGE--HPQIVTNNSVFFID 123
           D    Y ++  V+ G++YF + +T +YA N A G ++W +KTG+  H      +   ++ 
Sbjct: 153 DPFDSYLSSPVVVAGVVYFGSGDTNVYALNAADGSLKWKFKTGDVVHASPALADGTLYVG 212

Query: 124 NKEQ-LVKVSASTGKLLWKVKVSE-----RPMEIGGQAQLMNGKVYFANESGGVAAYHPA 177
           + +     + A+TGK  WK+K  E       + I   A + +G VYF        A    
Sbjct: 213 SWDSYFYAIDAATGKEKWKLKTGEDHDIYNQVGIQSSAAVADGVVYFGCRDSNFYAVDAK 272

Query: 178 TGKKLWENKKIPMYAGTLHGEYKGVLVVSSTVDNIRRQFFGLDPA--------TGKQLWR 229
           TG+K W                KG  V+SS      R +F              GK++W 
Sbjct: 273 TGEKKWAFNN------------KGSWVISSPAVKDGRVYFATSDTGLVYALDLNGKEVWH 320

Query: 230 TEGIYSMV 237
            +G + +V
Sbjct: 321 FDGKHWVV 328


>B1ZZA3.1 B1ZZA3_OPITP Pyrrolo-quinoline quinone
          Length = 423

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 14/180 (7%)

Query: 61  KWQVATDGIGMYDTTQPVMNGILYF-SAKNTLYAKNIASGQIRWSYKTGE--HPQIVTNN 117
           K QV  D    Y ++  V++G ++  S    +YA +  SG++RW + T +  H      +
Sbjct: 140 KQQVIADAWDCYLSSPTVVDGRVHVGSGDGHVYALDARSGELRWKFATQDVVHASPAVVD 199

Query: 118 SVFFIDNKEQ-LVKVSASTGKLLWKVKVSERPME-----IGGQAQLMNGKVYFANESGGV 171
            V ++ + +  L  + A+ G L WK K  E P       I     ++ G VYF      +
Sbjct: 200 GVVYVGSWDTFLYALDATNGALKWKFKTGEDPENHNQEGIQSSPTVVEGVVYFGCRDFHL 259

Query: 172 AAYHPATGKKLWENKKIPMYAGTLHGEYKGVLVVSSTVDNIRRQFFGLDPATGKQLWRTE 231
            A    TG + W++K   + A     + +   V +ST  +I   FF LD  TG++++R E
Sbjct: 260 YAVEAQTGTQRWKHKITWINATPTVRDGR---VYAST--SIPSMFFALDAQTGEEVYRVE 314


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 2,595,849,979
Number of extensions: 110114182
Number of successful extensions: 261922
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 262388
Number of HSP's successfully gapped: 16
Length of query: 448
Length of database: 3,060,696,203
Length adjustment: 139
Effective length of query: 309
Effective length of database: 1,751,175,118
Effective search space: 541113111462
Effective search space used: 541113111462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)