BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0196.0003.p (186 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZEV6.1 C0ZEV6_BREBN Probable transcriptional regulator 313 7e-84 A6LXA3.1 A6LXA3_CLOB8 Transcriptional regulator, TetR family 211 2e-53 C0ZGP1.1 C0ZGP1_BREBN Probable transcriptional regulator 161 2e-38 C1PXQ9.1 C1PXQ9_ALIAC Transcriptional regulator, TetR family 134 3e-30 B7DRU8.1 B7DRU8_9BACL Transcriptional regulator, TetR family 133 6e-30 >C0ZEV6.1 C0ZEV6_BREBN Probable transcriptional regulator Length = 191 Score = 313 bits (801), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 149/180 (82%), Positives = 164/180 (91%) Query: 1 MDRRIQKSRQAIIDAFMRLMSEKEFESITVNQIAEEANVNRGTVYLHFKDKYDLRDQHME 60 M RRIQKSRQAIIDAFMRLMSEKEFESIT+NQIA EANVNRGTVYLHF DKYDLR+Q + Sbjct: 1 MARRIQKSRQAIIDAFMRLMSEKEFESITINQIAVEANVNRGTVYLHFDDKYDLREQCIA 60 Query: 61 AQINQLLHECMSEDNMVHLPSKTALLRTFEYLEQHASFYSLMLKSKGNTVFRNQVETMFR 120 AQINQLL CMS D++VHLPSKTALL TFEYLEQHASFYS+MLKSKG+TVFRNQ+ETMF Sbjct: 61 AQINQLLRHCMSGDHLVHLPSKTALLHTFEYLEQHASFYSIMLKSKGSTVFRNQMETMFG 120 Query: 121 QRLSEHLDSINLDGELNKDITVQFLISAAVGVLEWWIIRSMPYPASVMVEQFWILLNQGV 180 + LSE+LDSINLD E+++DITVQFL SA VG+LEWWIIRSMPYP SVMVEQFW LLN+GV Sbjct: 121 ESLSEYLDSINLDKEMDRDITVQFLTSATVGILEWWIIRSMPYPPSVMVEQFWNLLNRGV 180 >A6LXA3.1 A6LXA3_CLOB8 Transcriptional regulator, TetR family Length = 185 Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 96/176 (54%), Positives = 133/176 (75%) Query: 1 MDRRIQKSRQAIIDAFMRLMSEKEFESITVNQIAEEANVNRGTVYLHFKDKYDLRDQHME 60 MDRRI+KS+QAI+ AF++LMSEK+FE IT+N+IAEEANVNRGTVYLH++DK+DL ++ ++ Sbjct: 1 MDRRIEKSKQAIMGAFIKLMSEKDFEKITINEIAEEANVNRGTVYLHYEDKFDLMNKCID 60 Query: 61 AQINQLLHECMSEDNMVHLPSKTALLRTFEYLEQHASFYSLMLKSKGNTVFRNQVETMFR 120 +NQL C+S+ + SK +LL+TF+YLE+HA FYS ML +K FR ++ TM Sbjct: 61 THLNQLCDSCISDGESSNFDSKASLLQTFQYLEKHAIFYSNMLTNKAMPAFRERILTMAL 120 Query: 121 QRLSEHLDSINLDGELNKDITVQFLISAAVGVLEWWIIRSMPYPASVMVEQFWILL 176 + + EHLD + ++K+I Q++ SAAVGV+EWWI+ SMPYPA+ M EQ W LL Sbjct: 121 KSMEEHLDMTGSNENISKNIMAQYVASAAVGVMEWWIVNSMPYPAAYMAEQLWQLL 176 >C0ZGP1.1 C0ZGP1_BREBN Probable transcriptional regulator Length = 186 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 74/171 (43%), Positives = 115/171 (67%) Query: 1 MDRRIQKSRQAIIDAFMRLMSEKEFESITVNQIAEEANVNRGTVYLHFKDKYDLRDQHME 60 MDRRI +SRQ I+ AF+ L+ E+EFE +T+ IA+ ANVNRGT+YLHF DKYDL +Q +E Sbjct: 1 MDRRIARSRQVIMQAFIELLGEQEFERVTIQGIADRANVNRGTIYLHFTDKYDLLEQSVE 60 Query: 61 AQINQLLHECMSEDNMVHLPSKTALLRTFEYLEQHASFYSLMLKSKGNTVFRNQVETMFR 120 + L C+ E+ + S+ L+R F YL++HA+ Y++++ +KG FR+++ M Sbjct: 61 NYLMMLADSCVPENGPTNELSRDLLIRAFTYLKEHAATYNVLITNKGIPTFRHRMTQMIE 120 Query: 121 QRLSEHLDSINLDGELNKDITVQFLISAAVGVLEWWIIRSMPYPASVMVEQ 171 ++ ++ + L+ ++KDI QFL + G++EWW+I+SMPY MVEQ Sbjct: 121 ANITLVVNQMTLETGIHKDILAQFLSVSITGLIEWWVIQSMPYTPEEMVEQ 171 >C1PXQ9.1 C1PXQ9_ALIAC Transcriptional regulator, TetR family Length = 200 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 102/179 (56%), Gaps = 8/179 (4%) Query: 1 MDRRIQKSRQAIIDAFMRLMSEKEFESITVNQIAEEANVNRGTVYLHFKDKYDLRDQHME 60 MDRR+QKSRQAI DAF+ LM EK+F+ ITV I E ANV+R T YLHF DKYDL D+ ME Sbjct: 1 MDRRVQKSRQAIRDAFVALMKEKDFDHITVQDITERANVSRKTFYLHFLDKYDLLDRVME 60 Query: 61 AQINQL--LHECMSEDNMVHLPSKTALLRTFEYLEQHASFYSLMLKSKGNTVFRNQ-VET 117 I + +C+SE + V A + F+YL F+ ML G FR + VE+ Sbjct: 61 DAIRDMDEFGQCVSELDWV-----PATEQCFQYLADRYDFFGTMLTQAGAPYFRRRYVES 115 Query: 118 MFRQRLSEHLDSINLDGELNKDITVQFLISAAVGVLEWWIIRSMPYPASVMVEQFWILL 176 E + D +D +QF+++A VG +EWW+ MPYP VM ++ +L Sbjct: 116 CKASFTREIRRVVGRDPLPEEDAILQFVVNAYVGTVEWWLQEGMPYPPRVMADRIGRML 174 >B7DRU8.1 B7DRU8_9BACL Transcriptional regulator, TetR family Length = 200 Score = 133 bits (335), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 102/179 (56%), Gaps = 8/179 (4%) Query: 1 MDRRIQKSRQAIIDAFMRLMSEKEFESITVNQIAEEANVNRGTVYLHFKDKYDLRDQHME 60 MDRR+QKSRQAI DAF+ LM EK+F+ ITV I E ANV+R T YLHF DKYDL D+ ME Sbjct: 1 MDRRVQKSRQAIRDAFVALMKEKDFDHITVQDITERANVSRKTFYLHFLDKYDLLDRVME 60 Query: 61 AQINQL--LHECMSEDNMVHLPSKTALLRTFEYLEQHASFYSLMLKSKGNTVFRNQ-VET 117 I ++ +C+ E + V A + F+YL F+ ML G FR + VE+ Sbjct: 61 DAIREMDEFGQCVCELDWV-----PATEQCFQYLADRYDFFGTMLTQAGAPYFRRRYVES 115 Query: 118 MFRQRLSEHLDSINLDGELNKDITVQFLISAAVGVLEWWIIRSMPYPASVMVEQFWILL 176 E + D +D +QF+++A VG +EWW+ MPYP VM ++ +L Sbjct: 116 CKVSFTREIRRVVGRDPLPEEDAILQFVVNAYVGTVEWWLQEGMPYPPRVMADRIGRML 174 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 975,889,957 Number of extensions: 35430766 Number of successful extensions: 111822 Number of sequences better than 1.0e-05: 849 Number of HSP's gapped: 111875 Number of HSP's successfully gapped: 851 Length of query: 186 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 58 Effective length of database: 1,854,806,283 Effective search space: 107578764414 Effective search space used: 107578764414 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)