BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0196.0002.p (249 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZEV7.1 C0ZEV7_BREBN Putative oxidoreductase 405 e-111 B2TEG2.1 B2TEG2_BURPP Short-chain dehydrogenase/reductase SDR 273 1e-71 B9T9J6.1 B9T9J6_RICCO Short-chain dehydrogenase, putative EC=1.1... 252 3e-65 B1G600.1 B1G600_9BURK Short-chain dehydrogenase/reductase SDR 251 5e-65 B2IKY3.1 B2IKY3_BEII9 Short-chain dehydrogenase/reductase SDR 245 2e-63 >C0ZEV7.1 C0ZEV7_BREBN Putative oxidoreductase Length = 249 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/231 (84%), Positives = 213/231 (92%) Query: 19 RALAEALHKLGNKVIISGRSKERLEETIQANPGISAVELNVQDPASIQAAAKQLIEEHPD 78 RALAEALH LGNKVIISGRSKERLEETI+ANPG+SA+ELNVQDPASI+ AAKQLIEE PD Sbjct: 19 RALAEALHHLGNKVIISGRSKERLEETIKANPGMSAMELNVQDPASIEGAAKQLIEEFPD 78 Query: 79 LNVLINNAGIIQPDNAGGVIDEDVLVSTVKTNLLGPIRMTSALIEHLKSKEEAVVINTTS 138 LNVLINNAGIIQPD+A GVIDED+LVSTV TNLLGPIR+TSALI+HLKSKEEAVVINTTS Sbjct: 79 LNVLINNAGIIQPDDAAGVIDEDILVSTVATNLLGPIRLTSALIDHLKSKEEAVVINTTS 138 Query: 139 ILGFMPLXXXXXXXXXXXXLHTYTLSQRYMLKDTSVKVLEIVPPWVQSNNNEPRAMPLAS 198 ILGF+PL LHTYTLSQRY+LKDTSVKV+EIVPPWVQSNN+EPRAMPLAS Sbjct: 139 ILGFVPLAATAVYSATKAALHTYTLSQRYLLKDTSVKVIEIVPPWVQSNNDEPRAMPLAS 198 Query: 199 FIEATIKVLGTDTDEVVVEEAKMFRNNPGPNEGVFVTQFNDSMRSQPPKIH 249 FI+ATIK+LGTDTDEV+VEEAKMFRNNPGPNEGVFVTQ ND+M+S+PPKIH Sbjct: 199 FIDATIKILGTDTDEVLVEEAKMFRNNPGPNEGVFVTQLNDTMKSEPPKIH 249 >B2TEG2.1 B2TEG2_BURPP Short-chain dehydrogenase/reductase SDR Length = 248 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 130/223 (58%), Positives = 167/223 (74%), Gaps = 4/223 (1%) Query: 21 LAEALHKLGNKVIISGRSKERLEETIQANPGISAVELNVQDPASIQAAAKQLIEEHPDLN 80 LAEA HKLGN+VII+GR K LEETI ANPGI +VEL++ DP SI A ++QLI ++P LN Sbjct: 21 LAEAFHKLGNQVIIAGRRKANLEETIAANPGIQSVELDITDPQSITAVSQQLIAQYPSLN 80 Query: 81 VLINNAGIIQPDNAGGVIDEDVLVSTVKTNLLGPIRMTSALIEHLKSKEEAVVINTTSIL 140 VLINNAG++Q D+ +++ ++VST+ TNL+GPIR+T AL+EHLK + +A +IN +S+L Sbjct: 81 VLINNAGVMQIDDLSKPVNDALIVSTLTTNLMGPIRLTGALVEHLKQQGDATIINVSSVL 140 Query: 141 GFMPLXXXXXXXXXXXXLHTYTLSQRYMLKDTSVKVLEIVPPWVQSN----NNEPRAMPL 196 GF+P+ +H+YT S RY LKDTSV+V+EI PPWVQ++ NEPRAMPL Sbjct: 141 GFVPMAISGVYSSAKAAIHSYTQSLRYKLKDTSVRVVEIAPPWVQTDLLDSRNEPRAMPL 200 Query: 197 ASFIEATIKVLGTDTDEVVVEEAKMFRNNPGPNEGVFVTQFND 239 A FIE T+ LGTD DE +VE A+ RNNPGPNE FVTQFND Sbjct: 201 APFIEQTMHELGTDADEAIVEIARPLRNNPGPNEAAFVTQFND 243 >B9T9J6.1 B9T9J6_RICCO Short-chain dehydrogenase, putative EC=1.1.1.100 Length = 253 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 121/231 (52%), Positives = 163/231 (70%), Gaps = 4/231 (1%) Query: 19 RALAEALHKLGNKVIISGRSKERLEETIQANPGISAVELNVQDPASIQAAAKQLIEEHPD 78 R+LAEA HK GNKVII+GR K L+E +ANPGI +EL++ D A IQ A+QLI ++P Sbjct: 19 RSLAEAFHKRGNKVIIAGRRKALLDEVAKANPGIDTIELDIADGAQIQQVARQLIAKYPT 78 Query: 79 LNVLINNAGIIQPDNAGGVIDEDVLVSTVKTNLLGPIRMTSALIEHLKSKEEAVVINTTS 138 LNV+INNAGI+ D+AGGV+D+ V + TNLLGP+R+++AL+EHLK E+ +IN +S Sbjct: 79 LNVVINNAGIMPFDDAGGVLDDAQAVHLINTNLLGPVRLSAALVEHLKQHPESYIINNSS 138 Query: 139 ILGFMPLXXXXXXXXXXXXLHTYTLSQRYMLKDTSVKVLEIVPPWVQSN----NNEPRAM 194 +L ++PL LH+Y++SQR+ML+DTSV+VLEI PPWV ++ + +PRAM Sbjct: 139 VLAYVPLATTALYSATKAALHSYSMSQRFMLRDTSVRVLEITPPWVDTDLVHKSGDPRAM 198 Query: 195 PLASFIEATIKVLGTDTDEVVVEEAKMFRNNPGPNEGVFVTQFNDSMRSQP 245 PL +FI T+ L T T EVVV A+ R+N GPNE FV QFN S+R P Sbjct: 199 PLDAFIAETMDKLATATTEVVVSVAQPLRDNAGPNEHAFVDQFNLSLRDNP 249 >B1G600.1 B1G600_9BURK Short-chain dehydrogenase/reductase SDR Length = 253 Score = 251 bits (641), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 121/231 (52%), Positives = 162/231 (70%), Gaps = 4/231 (1%) Query: 19 RALAEALHKLGNKVIISGRSKERLEETIQANPGISAVELNVQDPASIQAAAKQLIEEHPD 78 RALAEA H+ GNKVII+GR K L+E +ANPGI +EL++ D A IQ A+QLI +P Sbjct: 19 RALAEAFHQRGNKVIIAGRRKALLDEVAKANPGIDVIELDIADGAQIQQVARQLIGRYPT 78 Query: 79 LNVLINNAGIIQPDNAGGVIDEDVLVSTVKTNLLGPIRMTSALIEHLKSKEEAVVINTTS 138 LNVLINNAGI+ DNAG +D+ V + TNLLGP+RM++AL+EHLK + E+ +IN +S Sbjct: 79 LNVLINNAGIMPFDNAGSALDDAQAVHLINTNLLGPVRMSAALVEHLKQQPESTIINNSS 138 Query: 139 ILGFMPLXXXXXXXXXXXXLHTYTLSQRYMLKDTSVKVLEIVPPWVQSN----NNEPRAM 194 +L ++PL +H+YT+SQR+ML+DTSV+VLEI PPWV ++ + +PRAM Sbjct: 139 VLAYVPLAATALYSATKAAVHSYTMSQRFMLRDTSVRVLEIAPPWVDTDLVHRSGDPRAM 198 Query: 195 PLASFIEATIKVLGTDTDEVVVEEAKMFRNNPGPNEGVFVTQFNDSMRSQP 245 PL +FI T++ L T T EVVV A+ R+N GPNE FV QFN S++ P Sbjct: 199 PLDAFIAETLEKLATATQEVVVSAAQPLRDNVGPNEYAFVDQFNLSLKDNP 249 >B2IKY3.1 B2IKY3_BEII9 Short-chain dehydrogenase/reductase SDR Length = 252 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 118/231 (51%), Positives = 159/231 (68%), Gaps = 4/231 (1%) Query: 19 RALAEALHKLGNKVIISGRSKERLEETIQANPGISAVELNVQDPASIQAAAKQLIEEHPD 78 R LAEA HK+GNKVI++GR K ++E ANPGI +EL+V DPAS+ A L+ ++P Sbjct: 19 RGLAEAFHKIGNKVIVAGRRKSLIDEVTAANPGIEGIELDVADPASLAQVAAALVRDYPA 78 Query: 79 LNVLINNAGIIQPDNAGGVIDEDVLVSTVKTNLLGPIRMTSALIEHLKSKEEAVVINTTS 138 LNVLINNAG++ D+AGG ID+ + + TNLLGPIR+TSALI+HLK +++AVVI TS Sbjct: 79 LNVLINNAGVMPFDDAGGAIDDAAIRRVIDTNLLGPIRLTSALIDHLKRQQQAVVIYNTS 138 Query: 139 ILGFMPLXXXXXXXXXXXXLHTYTLSQRYMLKDTSVKVLEIVPPWVQSN----NNEPRAM 194 IL ++PL LH+Y LSQR+ML+DT+V+V EI PPWV ++ + +PRAM Sbjct: 139 ILAYVPLATAAVYSASKAALHSYALSQRFMLRDTNVRVQEIAPPWVDTDLVKKSGDPRAM 198 Query: 195 PLASFIEATIKVLGTDTDEVVVEEAKMFRNNPGPNEGVFVTQFNDSMRSQP 245 PL FI T+K L T+ +EV+VE + R+NPG E FV FN S+ + P Sbjct: 199 PLDPFIAETMKGLATEAEEVIVEAIRPLRDNPGSGEHKFVNGFNASLIANP 249 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.131 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,249,823,219 Number of extensions: 45737415 Number of successful extensions: 128214 Number of sequences better than 1.0e-05: 1505 Number of HSP's gapped: 133425 Number of HSP's successfully gapped: 1505 Length of query: 249 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 117 Effective length of database: 1,817,122,223 Effective search space: 212603300091 Effective search space used: 212603300091 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)