BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0026.p (270 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDZ7.1 B3KDZ7_9BACI Putative uncharacterized protein 371 e-101 B1D5J5.1 B1D5J5_9BACL Putative uncharacterized protein 289 2e-76 C1PD71.1 C1PD71_BACCO Putative uncharacterized protein 254 4e-66 A8F9E4.1 A8F9E4_BACP2 Hypothetical membrane protein 253 1e-65 B4AMX2.1 B4AMX2_BACPU Putative uncharacterized protein 253 1e-65 >B3KDZ7.1 B3KDZ7_9BACI Putative uncharacterized protein Length = 277 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 187/270 (69%), Positives = 204/270 (75%) Query: 1 MTWXXXXXXXXXXXXXXXXXXXVLNMVRGTRAVQLLKGILVLVVIWALSTLLDLYTLKWL 60 MTW ++ +VRGTRAVQLLKGILVLVVIWALST DLYTLKWL Sbjct: 8 MTWGESIKDIIDILIVTYIIYQMILLVRGTRAVQLLKGILVLVVIWALSTWFDLYTLKWL 67 Query: 61 MNQXXXXXXXXXXXXXQPELRRGLEQLGRGKFFGRAAENDEEISKLIGEVIKAVNYLAQR 120 MNQ QPELRRGLEQLGRGK FGR A+ DEE +KLI E IKAVNYL++R Sbjct: 68 MNQIFTFGVLAIFIIFQPELRRGLEQLGRGKLFGRTADIDEETNKLISETIKAVNYLSRR 127 Query: 121 KIGALIVFERATGLNEYTESGIPMRSVVSSELLINIFIPNTPLHDGALIMQEGQIAAAAC 180 KIGALIVFER TGLNEY ESGIPM SV+SSEL INIFIPNTPLHDGA+I+Q GQIAAA C Sbjct: 128 KIGALIVFERTTGLNEYVESGIPMGSVISSELFINIFIPNTPLHDGAVIIQNGQIAAAGC 187 Query: 181 YLPLSENPFISKELGTRHRAAIGIXXXXXXXXXXXXXXTGQISLAINGQIVRDIKEESLI 240 YLPLSENPFISKELGTRHRAAIGI TGQ+SLA+NGQ+VRDIKEESLI Sbjct: 188 YLPLSENPFISKELGTRHRAAIGISEVGDAISVVVSEETGQVSLALNGQVVRDIKEESLI 247 Query: 241 SKLYEELRATSSLKEKSSAFWKRKGDKNNG 270 SKLYEELR +S+KEK + FWKRKGD +NG Sbjct: 248 SKLYEELRPAASIKEKRTFFWKRKGDGSNG 277 >B1D5J5.1 B1D5J5_9BACL Putative uncharacterized protein Length = 284 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 154/252 (61%), Positives = 182/252 (72%), Gaps = 9/252 (3%) Query: 26 MVRGTRAVQLLKGILVLVVIWALSTLLDLYTLKWLMNQXXXXXXXXXXXXXQPELRRGLE 85 +VRGTRAVQLLKGILVLV WA+ST +LYTLKWLMNQ QPELRR LE Sbjct: 32 LVRGTRAVQLLKGILVLVGTWAISTWFNLYTLKWLMNQMFTFGVLAVFIIFQPELRRALE 91 Query: 86 QLGRGKFFGRAAENDEEI-SKLIGEVIKAVNYLAQRKIGALIVFERATGLNEYTESGIPM 144 QLGRGK F R + + +I ++ + V+KAV ++AQR IGALIVFER TG++E ESGI M Sbjct: 92 QLGRGKLFARTSTLERDIIAEQVESVMKAVQHMAQRTIGALIVFERNTGVSELIESGIQM 151 Query: 145 RSVVSSELLINIFIPNTPLHDGALIMQEGQIAAAACYLPLSENPFISKELGTRHRAAIGI 204 S ++SELLINIF PNTPLHDGA+I++ QI AA CYLPLSENPFISKELGTRHRAAIG+ Sbjct: 152 ESRITSELLINIFTPNTPLHDGAVIIRGNQIMAAGCYLPLSENPFISKELGTRHRAAIGV 211 Query: 205 XXXXXXXXXXXXXXTGQISLAINGQIVRDIKEESLISKLYEELRA-TSSLKEKSSA---- 259 TGQ+SLAING IVRDIKEESLISKL+EEL +S KE+++ Sbjct: 212 SEVSDAIAVIVSEETGQVSLAINGMIVRDIKEESLISKLFEELTPKQTSGKERATVSSFS 271 Query: 260 ---FWKRKGDKN 268 FWKRKG ++ Sbjct: 272 FSSFWKRKGGRD 283 >C1PD71.1 C1PD71_BACCO Putative uncharacterized protein Length = 275 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 129/247 (52%), Positives = 171/247 (69%), Gaps = 1/247 (0%) Query: 23 VLNMVRGTRAVQLLKGILVLVVIWALSTLLDLYTLKWLMNQXXXXXXXXXXXXXQPELRR 82 +L ++RGT+AVQLLKGI V++++ +LS+LL L L W+M+Q QPELRR Sbjct: 28 LLMVIRGTKAVQLLKGIFVIIIVRSLSSLLGLQALAWMMDQALTYGFLVVIIIFQPELRR 87 Query: 83 GLEQLGRGKFFGRA-AENDEEISKLIGEVIKAVNYLAQRKIGALIVFERATGLNEYTESG 141 LEQLGRGKFF R + ++E + L+ ++KA +Y+A+R+IGALI ER TGL +Y E+G Sbjct: 88 ALEQLGRGKFFSRTNGQEEDEQAHLVEAIVKATSYMAKRRIGALISIERGTGLGDYIETG 147 Query: 142 IPMRSVVSSELLINIFIPNTPLHDGALIMQEGQIAAAACYLPLSENPFISKELGTRHRAA 201 IP+ SVVS+ELLINIFIPNTPLHDGA+I+Q+ ++AAAACYLPLSE+PFISKELGTRHRAA Sbjct: 148 IPLDSVVSAELLINIFIPNTPLHDGAVIIQKRKVAAAACYLPLSESPFISKELGTRHRAA 207 Query: 202 IGIXXXXXXXXXXXXXXTGQISLAINGQIVRDIKEESLISKLYEELRATSSLKEKSSAFW 261 +GI TG I++ NG++ RD+ E L L EL T KE S + W Sbjct: 208 VGISEVTDCLTVVVSEETGGITVTKNGELHRDLSLEQLQEMLEAELNYTQKTKEPSLSKW 267 Query: 262 KRKGDKN 268 + K+ Sbjct: 268 NWRVRKH 274 >A8F9E4.1 A8F9E4_BACP2 Hypothetical membrane protein Length = 273 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 132/247 (53%), Positives = 170/247 (68%), Gaps = 3/247 (1%) Query: 23 VLNMVRGTRAVQLLKGILVLVVIWALSTLLDLYTLKWLMNQXXXXXXXXXXXXXQPELRR 82 ++ ++RGT+AVQLLKGI+V+V++ S L L TL+WLM+Q QPELRR Sbjct: 28 LMMVIRGTKAVQLLKGIVVIVLVRMGSAYLGLNTLQWLMDQAITWGFLAIIIIFQPELRR 87 Query: 83 GLEQLGRGKFFGRAAEN-DEEISKLIGEVIKAVNYLAQRKIGALIVFERATGLNEYTESG 141 LEQLGRG+FF R+ +E+ K I + KA+NY+A+R+IGAL+ ER TG+N+Y E+G Sbjct: 88 ALEQLGRGRFFSRSGTPVEEQQQKTIEAITKAINYMAKRRIGALLTIERDTGMNDYIETG 147 Query: 142 IPMRSVVSSELLINIFIPNTPLHDGALIMQEGQIAAAACYLPLSENPFISKELGTRHRAA 201 IP+ + VSSELLINIFIPNTPLHDGA+IM+ +IAAAACYLPLSE+PFISKELGTRHRAA Sbjct: 148 IPLNAKVSSELLINIFIPNTPLHDGAVIMKRDEIAAAACYLPLSESPFISKELGTRHRAA 207 Query: 202 IGIXXXXXXXXXXXXXXTGQISLAINGQIVRDIKEESLISKLYEELRATSSLKEKSSAFW 261 +GI TG IS+A NG + R++ EE+L L E S K+ SS W Sbjct: 208 VGISEVTDSLTVIVSEETGGISVARNGDLHRELTEEALQEMLIAEFSKNS--KDASSTKW 265 Query: 262 KRKGDKN 268 +G KN Sbjct: 266 YWRGKKN 272 >B4AMX2.1 B4AMX2_BACPU Putative uncharacterized protein Length = 273 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 132/247 (53%), Positives = 170/247 (68%), Gaps = 3/247 (1%) Query: 23 VLNMVRGTRAVQLLKGILVLVVIWALSTLLDLYTLKWLMNQXXXXXXXXXXXXXQPELRR 82 ++ ++RGT+AVQLLKGI+V+V++ S L L TL+WLM+Q QPELRR Sbjct: 28 LMMVIRGTKAVQLLKGIVVIVLVRMGSAYLGLNTLQWLMDQAITWGFLAIIIIFQPELRR 87 Query: 83 GLEQLGRGKFFGRAAEN-DEEISKLIGEVIKAVNYLAQRKIGALIVFERATGLNEYTESG 141 LEQLGRG+FF R+ +E+ K I + KA+NY+A+R+IGAL+ ER TG+N+Y E+G Sbjct: 88 ALEQLGRGRFFSRSGTPVEEQQQKTIEAITKAINYMAKRRIGALLTIERDTGMNDYIETG 147 Query: 142 IPMRSVVSSELLINIFIPNTPLHDGALIMQEGQIAAAACYLPLSENPFISKELGTRHRAA 201 IP+ + VSSELLINIFIPNTPLHDGA+IM+ +IAAAACYLPLSE+PFISKELGTRHRAA Sbjct: 148 IPLNAKVSSELLINIFIPNTPLHDGAVIMKRDEIAAAACYLPLSESPFISKELGTRHRAA 207 Query: 202 IGIXXXXXXXXXXXXXXTGQISLAINGQIVRDIKEESLISKLYEELRATSSLKEKSSAFW 261 +GI TG IS+A NG + R++ EE+L L E S K+ SS W Sbjct: 208 VGISEVTDSLTVIVSEETGGISVARNGDLHRELTEEALEEMLIAEFSKNS--KDASSTKW 265 Query: 262 KRKGDKN 268 +G KN Sbjct: 266 YWRGKKN 272 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,194,980,026 Number of extensions: 39991804 Number of successful extensions: 93437 Number of sequences better than 1.0e-05: 731 Number of HSP's gapped: 92706 Number of HSP's successfully gapped: 731 Length of query: 270 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 137 Effective length of database: 1,807,701,208 Effective search space: 247655065496 Effective search space used: 247655065496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)