BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0025.p (272 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDZ6.1 B3KDZ6_9BACI YbbR family protein 211 6e-53 B1D5J4.1 B1D5J4_9BACL YbbR family protein 159 4e-37 C0ZIM7.1 C0ZIM7_BREBN Conserved hypothetical membrane protein 114 1e-23 Q71XP4.1 Q71XP4_LISMF Putative uncharacterized protein 73 3e-11 Q4EL72.1 Q4EL72_LISMO Putative uncharacterized protein 73 3e-11 >B3KDZ6.1 B3KDZ6_9BACI YbbR family protein Length = 494 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 113/243 (46%), Positives = 160/243 (65%), Gaps = 3/243 (1%) Query: 1 MDKWMKNNNFNKXXXXXXXXXXWTIVHVDTAPTSQTTVNKESKIIENVKIEVKGFDEDKY 60 MDKW+KNN +K W +VH+D+ + T ++KIIE VKI+ GFD+ +Y Sbjct: 1 MDKWIKNNTASKLIALAVSILLWAMVHMDSGTPAPPTTFYDTKIIEGVKIQTYGFDDGEY 60 Query: 61 VITSQDAVSVRLEVLGKKSDLTYKFSDAYKVWIDLSNI-QPGDTTLPLHYSLPSGVTLQD 119 V+T D V LEV GKKS+++ +D YKV +DLSN+ +PG TLPL YS+PSGV + Sbjct: 61 VLTGIDQDRVNLEVRGKKSNISL-LTDEYKVKLDLSNVKEPGTHTLPLTYSIPSGVEMVS 119 Query: 120 INPNEVNVRVELRNTKSFPVSIVTKGKPAAGYQVGAPV-IDPAEAQVTLASSELSKVSKV 178 + P+ V V VE R +KS VSI TKG+PA Y+ G PV IDP + VTL S ++ + +V Sbjct: 120 MEPSVVTVTVEPRVSKSVTVSIGTKGEPAKDYRAGTPVLIDPRQVTVTLPESSMANLGQV 179 Query: 179 QGTIELDGESETIKDKKLKLYAVDSSGNEIKDAVIEPSTVTVDLPVTMPFKSLPLDISFT 238 +G +ELDG E I +K++KL A D G E++DAVIEP+TV ++P+ F +LPL++ +T Sbjct: 180 KGNVELDGAKEKITEKRVKLTAYDKEGAEMEDAVIEPATVAAEVPIEPAFVTLPLELQYT 239 Query: 239 GQL 241 G+L Sbjct: 240 GRL 242 >B1D5J4.1 B1D5J4_9BACL YbbR family protein Length = 490 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 136/243 (55%), Gaps = 2/243 (0%) Query: 1 MDKWMKNNNFNKXXXXXXXXXXWTIVHVDTAPTSQT-TVNKESKIIENVKIEVKGFDEDK 59 MDKW+ + K W +VH D T T T ++K+IE + G DE K Sbjct: 1 MDKWLSHPTILKILSVAIALVLWGMVHFDPESTPATVTSTMDTKVIEAASVIPTGLDETK 60 Query: 60 YVITSQDAVSVRLEVLGKKSDLTYKFSDAYKVWIDLSNIQPGDTTLPLHYSLPSGVTLQD 119 Y + + + VRL V G+K++L + Y V +DLS++ PG+ +PL Y LP G++L + Sbjct: 61 YALVNVEPTVVRLVVEGRKANLLTMKDEDYAVHLDLSHVTPGEHVVPLTYDLPKGISLIE 120 Query: 120 INPNEVNVRVELRNTKSFPVSIVTKGKPAAGYQVGAPVIDPAE-AQVTLASSELSKVSKV 178 ++P V + TK+F + + T+G PA GY G P + VTL E++ V V Sbjct: 121 MSPRSATVDIVEIETKTFELGVATEGTPANGYIAGTPTVKSGTIVNVTLPKDEMALVGAV 180 Query: 179 QGTIELDGESETIKDKKLKLYAVDSSGNEIKDAVIEPSTVTVDLPVTMPFKSLPLDISFT 238 + T++++G + + +KK ++ D+ G ++ A+I PSTV V++PVT P K++PL IS+T Sbjct: 181 RTTVDIEGSEKNVVNKKAQVVVYDTEGEAMEHAIIRPSTVEVEVPVTPPLKTMPLQISYT 240 Query: 239 GQL 241 G L Sbjct: 241 GSL 243 >C0ZIM7.1 C0ZIM7_BREBN Conserved hypothetical membrane protein Length = 415 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 133/245 (54%), Gaps = 10/245 (4%) Query: 1 MDKWMKNNNFNKXXXXXXXXXXWTIVHVDTAPTSQTTVNKESK--IIENVKIEVKGFDED 58 MDKW+ ++ F + W IV+++ QTT + S+ I++V + VK +D D Sbjct: 1 MDKWLNSHWFARAVALLLAIMTWMIVNLEA---EQTTTPEASQPTFIDSVNLHVK-YDTD 56 Query: 59 KY-VITSQDAVSVRLEVLGKKSDLTYKFSDAYKVWIDLSNIQPGDTTLPLHY-SLPSGVT 116 +Y V+ Q V V LE + ++++V++D +N+ G +P+ Y P V Sbjct: 57 RYQVVKQQRTVKVALESNNPFYRHNFFPEESWEVYVDATNLGKGTHRVPVQYKGFPDEVK 116 Query: 117 LQDINPNEVNVRVELRNTKSFPVSIVTKGKPAAGYQVGAPVIDPAEAQVTLASSELSKVS 176 + I PN V + +E + T VS+ G+ A GY G P++ P A V + S+++KV+ Sbjct: 117 V-GIIPNIVEITLEEKKTVEREVSVEKLGQVAPGYTAGEPIVKPFRALVRVPESQVNKVA 175 Query: 177 KVQGTIELDGESETIKDKKLKLYAVDSSGNEIKDAVIEPSTVTVDLPVTMPFKSLPLDIS 236 V+ +++L+G + IK + L VD SGN I+ A + P TV V++PVT PF +P+ ++ Sbjct: 176 AVKASVDLEGATSAIK-TTVPLKVVDKSGNVIQGADVVPLTVEVNIPVTSPFAKVPIKLN 234 Query: 237 FTGQL 241 T +L Sbjct: 235 LTNEL 239 >Q71XP4.1 Q71XP4_LISMF Putative uncharacterized protein Length = 453 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 5/199 (2%) Query: 43 KIIENVKIEVKGFDEDKYVITSQDAVSVRLEVLGKKSDL-TYKFSDAYKVWIDLSNIQPG 101 ++IENV ++V + Y+ + V+V L G +S + + K + V+ DL N G Sbjct: 46 EVIENVPVKVYYDKTNLYISGIPETVTVTLS--GPRSIVQSAKAQQDFTVYADLKNASIG 103 Query: 102 DTTLPLHYSLPSGVTLQDINPNEVNVRVELRNTKSFPVSI-VTKGKPAAGYQVGAPVIDP 160 + L S +NP VNV V+ + TK F V + ++K A GYQ G P+IDP Sbjct: 104 TQEVKLQVKDVSDRLKVKVNPATVNVNVQEKVTKKFSVDVELSKSVVADGYQAGTPIIDP 163 Query: 161 AEAQVTLASSELSKVSKVQGTIELDGESETIKDKKLKLYAVDSSGNEIKDAVIEPSTVTV 220 + +T A + +++ V+ T+E DG+ ++ K + DS+ N++ D + P V V Sbjct: 164 KKVSITGAKDTIEQIAYVKATLESDGKHKSEFTDKATVSVFDSNLNKL-DVEVNPQEVEV 222 Query: 221 DLPVTMPFKSLPLDISFTG 239 +PV KS+P+ I G Sbjct: 223 TVPVEKVGKSVPVKIKQEG 241 >Q4EL72.1 Q4EL72_LISMO Putative uncharacterized protein Length = 453 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 5/199 (2%) Query: 43 KIIENVKIEVKGFDEDKYVITSQDAVSVRLEVLGKKSDL-TYKFSDAYKVWIDLSNIQPG 101 ++IENV ++V + Y+ + V+V L G +S + + K + V+ DL N G Sbjct: 46 EVIENVPVKVYYDKTNLYISGIPETVTVTLS--GPRSIVQSAKAQQDFTVYADLKNASIG 103 Query: 102 DTTLPLHYSLPSGVTLQDINPNEVNVRVELRNTKSFPVSI-VTKGKPAAGYQVGAPVIDP 160 + L S +NP VNV V+ + TK F V + ++K A GYQ G P+IDP Sbjct: 104 TQEVKLQVKDVSDRLKVKVNPATVNVNVQEKVTKKFSVDVELSKSVVADGYQAGTPIIDP 163 Query: 161 AEAQVTLASSELSKVSKVQGTIELDGESETIKDKKLKLYAVDSSGNEIKDAVIEPSTVTV 220 + +T A + +++ V+ T+E DG+ ++ K + DS+ N++ D + P V V Sbjct: 164 KKVSITGAKDTIEQIAYVKATLESDGKHKSEFTDKATVSVFDSNLNKL-DVEVNPQEVEV 222 Query: 221 DLPVTMPFKSLPLDISFTG 239 +PV KS+P+ I G Sbjct: 223 TVPVEKVGKSVPVKIKQEG 241 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.130 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,453,937,739 Number of extensions: 56618739 Number of successful extensions: 139490 Number of sequences better than 1.0e-05: 199 Number of HSP's gapped: 139393 Number of HSP's successfully gapped: 199 Length of query: 272 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 139 Effective length of database: 1,807,701,208 Effective search space: 251270467912 Effective search space used: 251270467912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)