BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0017.p (310 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DCJ9.1 B1DCJ9_9BACL Transcriptional regulator, AraC family 352 3e-95 B1DF76.1 B1DF76_9BACL Transcriptional regulator, AraC family 344 8e-93 B1D9V3.1 B1D9V3_9BACL Transcriptional regulator, AraC family 326 1e-87 A3L8I3.1 A3L8I3_PSEAE Putative uncharacterized protein 319 2e-85 B7VA57.1 B7VA57_PSEA8 Probable transcriptional regulator 318 3e-85 >B1DCJ9.1 B1DCJ9_9BACL Transcriptional regulator, AraC family Length = 299 Score = 352 bits (903), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 172/295 (58%), Positives = 229/295 (77%), Gaps = 3/295 (1%) Query: 3 KTTNLIQKQKELAELIDRFSPGEGVHATDIPSLYCIRSSKITEPIYRVHEPALCIVAQGK 62 KT N KQ ELA+L+++FS +G H+T IPSL+ +R S+ PI R+ +P+LCIVAQG+ Sbjct: 7 KTYN---KQLELAQLVEKFSGADGDHSTPIPSLHLVRDSRSEVPICRIQKPSLCIVAQGE 63 Query: 63 KEVMLTEERYQYGPSDYLVVSVDLPVSGQIIEALSDVPYLCFRLDFKPAQIVEILEESEL 122 K +ML +ERYQYG SDYL VS+D+P++G+ + + PYL RLD + +QI +I++E+EL Sbjct: 64 KVIMLADERYQYGVSDYLAVSLDVPITGRATQPSPESPYLAIRLDLEASQIFQIMKETEL 123 Query: 123 RAVQPADSRRGLFISQTSTSLLDAAIRLVRLLETPEDIKALAPMYIREILYRILKGQQGD 182 RGLF+ + + +LLDAA+RLV LLETP+DI ALAP+ IREI+YR+L QGD Sbjct: 124 LPDSTNRYHRGLFVGKMNNALLDAAVRLVGLLETPKDIPALAPLVIREIIYRLLSDDQGD 183 Query: 183 VLKQIAVEGSSAYRIKEVIEQIKQNYAQPLRIEELAELANMSPSSLHRHFKEVTAMSPLQ 242 V KQIA+ GS+ I EV+E+IK++Y QPLRIEELAELA+MS SSL+RHFKEVTAM+P+Q Sbjct: 184 VFKQIAMAGSNYASIAEVVERIKRDYNQPLRIEELAELAHMSSSSLYRHFKEVTAMTPVQ 243 Query: 243 YQKRIRLQEARRLLLSETADAAEAAFQVGYDSPSHFSREYARMFGLPPIADMKRL 297 YQK+IRLQEARR LL+E+ A+ AF+VGY+SPS FSREYAR+FG P++D+KR Sbjct: 244 YQKQIRLQEARRRLLTESTHVADIAFEVGYESPSQFSREYARLFGFSPVSDIKRF 298 >B1DF76.1 B1DF76_9BACL Transcriptional regulator, AraC family Length = 300 Score = 344 bits (882), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 162/293 (55%), Positives = 223/293 (76%) Query: 7 LIQKQKELAELIDRFSPGEGVHATDIPSLYCIRSSKITEPIYRVHEPALCIVAQGKKEVM 66 +I +Q ELA++I+R+ +GV T IPSL+ +R S T P + V++P+ C+VAQG+K+V Sbjct: 4 IITRQNELAQIIERYVEEDGVLKTAIPSLFFMRRSNATGPSHGVYKPSFCLVAQGEKDVW 63 Query: 67 LTEERYQYGPSDYLVVSVDLPVSGQIIEALSDVPYLCFRLDFKPAQIVEILEESELRAVQ 126 L ++ + Y P+DYLV SV LPV+ Q+ EA DVPYL RL+F P+QI+++L +S+L+ Sbjct: 64 LGKDHFVYSPADYLVASVHLPVTTQVTEATPDVPYLGLRLEFMPSQILKVLYDSKLQTAP 123 Query: 127 PADSRRGLFISQTSTSLLDAAIRLVRLLETPEDIKALAPMYIREILYRILKGQQGDVLKQ 186 + +R +F+S TSLLDA IRL RLL+ PEDI LA +Y EILYR+L+G+ GD+LK Sbjct: 124 KENPKRAMFVSHVETSLLDAVIRLARLLDHPEDIPLLASLYTDEILYRVLQGENGDILKG 183 Query: 187 IAVEGSSAYRIKEVIEQIKQNYAQPLRIEELAELANMSPSSLHRHFKEVTAMSPLQYQKR 246 I +E SS ++I++VIE I N+ P+RIEELAE+ANMS S+ HRHFKEVTAMSPLQ+QK+ Sbjct: 184 IVMEESSIHQIRDVIEHIMNNFHHPIRIEELAEIANMSSSTFHRHFKEVTAMSPLQFQKQ 243 Query: 247 IRLQEARRLLLSETADAAEAAFQVGYDSPSHFSREYARMFGLPPIADMKRLRA 299 +RLQEARR LL+E+ DA++ A++VGY+S S FSREYARMFG PPI D+KR + Sbjct: 244 MRLQEARRQLLTESTDASDVAYRVGYESISQFSREYARMFGSPPIQDIKRFKG 296 >B1D9V3.1 B1D9V3_9BACL Transcriptional regulator, AraC family Length = 301 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 166/289 (57%), Positives = 215/289 (74%), Gaps = 1/289 (0%) Query: 15 AELIDRFSPGE-GVHATDIPSLYCIRSSKITEPIYRVHEPALCIVAQGKKEVMLTEERYQ 73 AELIDRF+ + GVH T I SL+ R ++ TEP + VH ++C V QGKKEV L EER+ Sbjct: 13 AELIDRFAGQQNGVHETPISSLFLFRQNQPTEPSHGVHSRSICFVFQGKKEVSLAEERFP 72 Query: 74 YGPSDYLVVSVDLPVSGQIIEALSDVPYLCFRLDFKPAQIVEILEESELRAVQPADSRRG 133 Y P +YLV SV+LPV +I+EA S+ PYL +L+F P QI+ +++ES ++ +RRG Sbjct: 73 YSPDEYLVASVELPVISRILEASSERPYLALKLEFSPEQILGVMKESGIQPRPQEHARRG 132 Query: 134 LFISQTSTSLLDAAIRLVRLLETPEDIKALAPMYIREILYRILKGQQGDVLKQIAVEGSS 193 LFI Q SL DA RLV+LLE P+DI LAP+ I+EILYRIL+ + G L+Q+A+EG Sbjct: 133 LFIGQMERSLTDAIHRLVQLLEQPDDIPLLAPLLIKEILYRILQSKHGVSLEQLALEGGG 192 Query: 194 AYRIKEVIEQIKQNYAQPLRIEELAELANMSPSSLHRHFKEVTAMSPLQYQKRIRLQEAR 253 A+RIKEVI+ IK+NY + +R +ELA +ANMS +L+RHFKEVTAMSP+Q+QK +RLQ AR Sbjct: 193 AFRIKEVIDHIKKNYEKSIRSDELAAIANMSVPTLYRHFKEVTAMSPIQFQKHLRLQAAR 252 Query: 254 RLLLSETADAAEAAFQVGYDSPSHFSREYARMFGLPPIADMKRLRAMVA 302 LLLSE +AA+ AF+VGY+SPS FSREYARMFGL PI D+KRLR A Sbjct: 253 SLLLSEPVNAADVAFRVGYESPSQFSREYARMFGLSPIQDIKRLRTFDA 301 >A3L8I3.1 A3L8I3_PSEAE Putative uncharacterized protein Length = 329 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 154/292 (52%), Positives = 208/292 (71%) Query: 7 LIQKQKELAELIDRFSPGEGVHATDIPSLYCIRSSKITEPIYRVHEPALCIVAQGKKEVM 66 L Q+Q ELA+L+ + P +GV+ T + L IR+ T P +H+PALCI+AQG+KEV Sbjct: 35 LRQRQSELAQLLLKHCPSDGVYGTAVDPLALIRADGPTLPARGMHKPALCIIAQGRKEVQ 94 Query: 67 LTEERYQYGPSDYLVVSVDLPVSGQIIEALSDVPYLCFRLDFKPAQIVEILEESELRAVQ 126 L EERY Y P YLVVSV LP++GQ+I+A D PYLC RLD PA+I +++ ++ V Sbjct: 95 LAEERYIYDPLHYLVVSVTLPLAGQVIDASPDAPYLCVRLDIDPAEITQLISDAGPMEVA 154 Query: 127 PADSRRGLFISQTSTSLLDAAIRLVRLLETPEDIKALAPMYIREILYRILKGQQGDVLKQ 186 RGL++ + SLLDA +RL+ LL++P DI LAP+ +REI YR+L+ QG L + Sbjct: 155 SRRGDRGLYVDRIDASLLDAVLRLIHLLDSPRDIPMLAPLILREIFYRLLRSGQGQRLHE 214 Query: 187 IAVEGSSAYRIKEVIEQIKQNYAQPLRIEELAELANMSPSSLHRHFKEVTAMSPLQYQKR 246 IA+ S A+RI I+ I QNY +PLRIE+LA++ N+SPS+LH FK VTAMSPLQYQK+ Sbjct: 215 IAIADSQAHRITRAIDWINQNYGKPLRIEQLAQVVNLSPSTLHHRFKAVTAMSPLQYQKQ 274 Query: 247 IRLQEARRLLLSETADAAEAAFQVGYDSPSHFSREYARMFGLPPIADMKRLR 298 +RLQEARRL+ SE + A A ++VGY+SPS FSREY+R+FG PP+ D+ R R Sbjct: 275 LRLQEARRLIFSEGLEVAAAGYRVGYESPSQFSREYSRLFGAPPLRDLARAR 326 >B7VA57.1 B7VA57_PSEA8 Probable transcriptional regulator Length = 310 Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 154/292 (52%), Positives = 208/292 (71%) Query: 7 LIQKQKELAELIDRFSPGEGVHATDIPSLYCIRSSKITEPIYRVHEPALCIVAQGKKEVM 66 L Q+Q ELA+L+ + P +GV+ T + L IR+ T P +H+PALCI+AQG+KEV Sbjct: 16 LRQRQSELAQLLLKHCPSDGVYGTAVDPLALIRADGPTLPARGMHKPALCIIAQGRKEVQ 75 Query: 67 LTEERYQYGPSDYLVVSVDLPVSGQIIEALSDVPYLCFRLDFKPAQIVEILEESELRAVQ 126 L EERY Y P YLVVSV LP++GQ+I+A D PYLC RLD PA+I +++ ++ V Sbjct: 76 LAEERYIYDPLHYLVVSVTLPLAGQVIDASPDAPYLCVRLDIDPAEITQLISDAGPMEVA 135 Query: 127 PADSRRGLFISQTSTSLLDAAIRLVRLLETPEDIKALAPMYIREILYRILKGQQGDVLKQ 186 RGL++ + SLLDA +RL+ LL++P DI LAP+ +REI YR+L+ QG L + Sbjct: 136 SRRGDRGLYVDRIDASLLDAVLRLIHLLDSPRDIPMLAPLILREIFYRLLRSGQGQRLHE 195 Query: 187 IAVEGSSAYRIKEVIEQIKQNYAQPLRIEELAELANMSPSSLHRHFKEVTAMSPLQYQKR 246 IA+ S A+RI I+ I QNY +PLRIE+LA++ N+SPS+LH FK VTAMSPLQYQK+ Sbjct: 196 IAIADSQAHRITRAIDWINQNYGKPLRIEQLAQVVNLSPSTLHHRFKAVTAMSPLQYQKQ 255 Query: 247 IRLQEARRLLLSETADAAEAAFQVGYDSPSHFSREYARMFGLPPIADMKRLR 298 +RLQEARRL+ SE + A A ++VGY+SPS FSREY+R+FG PP+ D+ R R Sbjct: 256 LRLQEARRLIFSEGLEVAAAGYRVGYESPSQFSREYSRLFGAPPLRDLARAR 307 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,687,336,890 Number of extensions: 64600672 Number of successful extensions: 211507 Number of sequences better than 1.0e-05: 3830 Number of HSP's gapped: 212493 Number of HSP's successfully gapped: 3831 Length of query: 310 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 175 Effective length of database: 1,788,859,178 Effective search space: 313050356150 Effective search space used: 313050356150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)