BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0015.p (280 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5XDT0.1 Q5XDT0_STRP6 ABC transporter substrate-binding protein 196 2e-48 A2RGC7.1 A2RGC7_STRPG Extracellular solute-binding protein 196 2e-48 Q8P2K8.1 Q8P2K8_STRP8 Putative uncharacterized protein 196 2e-48 Q1J8E6.1 Q1J8E6_STRPF ABC transporter substrate-binding protein 196 2e-48 Q9A1E5.1 Q9A1E5_STRP1 Putative uncharacterized protein 196 2e-48 >Q5XDT0.1 Q5XDT0_STRP6 ABC transporter substrate-binding protein Length = 280 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 110/280 (39%), Positives = 162/280 (57%), Gaps = 9/280 (3%) Query: 1 MKKRFLPGVFILLLG-VIIAGCGNKSEAGSGAQNDAGAGSKTIVAATSGVSNPFSYDKDG 59 +KK++L I L +++A CG+ +A SG Q SK ++ AT G + PFSY+K G Sbjct: 2 IKKQYLGRATIALASTLVLAACGSSKKAESGNQ----GSSKEVLFATVGTTAPFSYEKGG 57 Query: 60 KLTGYDVEVMKAIFEGLPEYKLEVQAIEFEGILTGLDNGRFQLGANNFGSNAERRSKYNF 119 +LTGYD+EV KA+F+G +YK+ + E+ I TGLD+G++Q+G NN ER +KY F Sbjct: 58 QLTGYDIEVAKAVFKGSDDYKVSFKKTEWSSIFTGLDSGKYQMGGNNISFTKERSAKYLF 117 Query: 120 SLPIIENANVFVVRKDDNTLKSVEDLKGYKAVTEVGNSGATLLENYNADHPDAKAEIMYT 179 S PI +V VV KD + +KS +D++G+ G + LE++N H D + +T Sbjct: 118 SYPIGSTPSVLVVPKDSD-IKSFDDIQGHTTQVVQGTTSVAQLEDFNKKHSDNPVTLKFT 176 Query: 180 DENFVKQFEGIEAGRYDVRIISRVSAEKAIKEHGFTNLKVVPFSTENSDPGSYILFSKSA 239 +EN + + G+ D +I + IK G NLK + T P Y +FS+ Sbjct: 177 NENITQMLTNLSEGKADFKIFDAPTVNAIIKNQGLDNLKTIEL-TSTEQPFIYFIFSQDQ 235 Query: 240 DSTLLDAVNKRIKEIYNDGTLLKISEEQLGGDYLPK-KEL 278 + L VNKRIKE+ DGTL K+++E LGGDY+P KEL Sbjct: 236 EK-LQSFVNKRIKELTADGTLSKLAKEHLGGDYVPSDKEL 274 >A2RGC7.1 A2RGC7_STRPG Extracellular solute-binding protein Length = 280 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 110/280 (39%), Positives = 162/280 (57%), Gaps = 9/280 (3%) Query: 1 MKKRFLPGVFILLLG-VIIAGCGNKSEAGSGAQNDAGAGSKTIVAATSGVSNPFSYDKDG 59 +KK++L I L +++A CG+ +A SG Q SK ++ AT G + PFSY+K G Sbjct: 2 IKKQYLGRATIALASTLVLAACGSSKKAESGNQ----GSSKEVLFATVGTTAPFSYEKGG 57 Query: 60 KLTGYDVEVMKAIFEGLPEYKLEVQAIEFEGILTGLDNGRFQLGANNFGSNAERRSKYNF 119 +LTGYD+EV KA+F+G +YK+ + E+ I TGLD+G++Q+G NN ER +KY F Sbjct: 58 QLTGYDIEVAKAVFKGSDDYKVSFKKTEWSSIFTGLDSGKYQMGGNNISFTKERSAKYLF 117 Query: 120 SLPIIENANVFVVRKDDNTLKSVEDLKGYKAVTEVGNSGATLLENYNADHPDAKAEIMYT 179 S PI +V VV KD + +KS +D++G+ G + LE++N H D + +T Sbjct: 118 SYPIGSTPSVLVVPKDSD-IKSFDDIQGHTTQVVQGTTSVAQLEDFNKKHSDNPVTLKFT 176 Query: 180 DENFVKQFEGIEAGRYDVRIISRVSAEKAIKEHGFTNLKVVPFSTENSDPGSYILFSKSA 239 +EN + + G+ D +I + IK G NLK + T P Y +FS+ Sbjct: 177 NENITQMLTNLSEGKADFKIFDAPTVNAIIKNQGLDNLKTIEL-TSTEQPFIYFIFSQDQ 235 Query: 240 DSTLLDAVNKRIKEIYNDGTLLKISEEQLGGDYLPK-KEL 278 + L VNKRIKE+ DGTL K+++E LGGDY+P KEL Sbjct: 236 EK-LQSFVNKRIKELTADGTLSKLAKEHLGGDYVPSDKEL 274 >Q8P2K8.1 Q8P2K8_STRP8 Putative uncharacterized protein Length = 280 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 110/280 (39%), Positives = 162/280 (57%), Gaps = 9/280 (3%) Query: 1 MKKRFLPGVFILLLG-VIIAGCGNKSEAGSGAQNDAGAGSKTIVAATSGVSNPFSYDKDG 59 +KK++L I L +++A CG+ +A SG Q SK ++ AT G + PFSY+K G Sbjct: 2 VKKQYLGRATIALASTLVLAACGSSKKAESGNQ----GSSKEVLFATVGTTAPFSYEKGG 57 Query: 60 KLTGYDVEVMKAIFEGLPEYKLEVQAIEFEGILTGLDNGRFQLGANNFGSNAERRSKYNF 119 +LTGYD+EV KA+F+G +YK+ + E+ I TGLD+G++Q+G NN ER +KY F Sbjct: 58 QLTGYDIEVAKAVFKGSDDYKVSFKKTEWSSIFTGLDSGKYQMGGNNISFTKERSAKYLF 117 Query: 120 SLPIIENANVFVVRKDDNTLKSVEDLKGYKAVTEVGNSGATLLENYNADHPDAKAEIMYT 179 S PI +V VV KD + +KS +D++G+ G + LE++N H D + +T Sbjct: 118 SYPIGSTPSVLVVPKDSD-IKSFDDIQGHTTQVVQGTTSVAQLEDFNKKHSDNPVTLKFT 176 Query: 180 DENFVKQFEGIEAGRYDVRIISRVSAEKAIKEHGFTNLKVVPFSTENSDPGSYILFSKSA 239 +EN + + G+ D +I + IK G NLK + T P Y +FS+ Sbjct: 177 NENITQMLTNLSEGKADFKIFDAPTVNAIIKNQGLDNLKTIEL-TSTEQPFIYFIFSQDQ 235 Query: 240 DSTLLDAVNKRIKEIYNDGTLLKISEEQLGGDYLPK-KEL 278 + L VNKRIKE+ DGTL K+++E LGGDY+P KEL Sbjct: 236 EK-LQSFVNKRIKELTADGTLSKLAKEHLGGDYVPSDKEL 274 >Q1J8E6.1 Q1J8E6_STRPF ABC transporter substrate-binding protein Length = 280 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 110/280 (39%), Positives = 161/280 (57%), Gaps = 9/280 (3%) Query: 1 MKKRFLPGVFILLLG-VIIAGCGNKSEAGSGAQNDAGAGSKTIVAATSGVSNPFSYDKDG 59 +KK++L I L +++A CG+ A SG Q SK ++ AT G + PFSY+K G Sbjct: 2 IKKQYLGRATIALASTLVLAACGSSKTAESGNQ----GSSKEVLFATVGTTAPFSYEKGG 57 Query: 60 KLTGYDVEVMKAIFEGLPEYKLEVQAIEFEGILTGLDNGRFQLGANNFGSNAERRSKYNF 119 +LTGYD+EV KA+F+G +YK+ + E+ I TGLD+G++Q+G NN ER +KY F Sbjct: 58 QLTGYDIEVAKAVFKGSDDYKVSFKKTEWSSIFTGLDSGKYQMGGNNISFTKERSAKYLF 117 Query: 120 SLPIIENANVFVVRKDDNTLKSVEDLKGYKAVTEVGNSGATLLENYNADHPDAKAEIMYT 179 S PI +V VV KD + +KS +D++G+ G + LE++N H D + +T Sbjct: 118 SYPIGSTPSVLVVPKDSD-IKSFDDIQGHTTQVVQGTTSVAQLEDFNKKHSDNPVTLKFT 176 Query: 180 DENFVKQFEGIEAGRYDVRIISRVSAEKAIKEHGFTNLKVVPFSTENSDPGSYILFSKSA 239 +EN + + G+ D +I + IK G NLK + T P Y +FS+ Sbjct: 177 NENITQMLTNLSEGKADFKIFDAPTVNAIIKNQGLDNLKTIEL-TSTEQPFIYFIFSQDQ 235 Query: 240 DSTLLDAVNKRIKEIYNDGTLLKISEEQLGGDYLPK-KEL 278 + L VNKRIKE+ DGTL K+++E LGGDY+P KEL Sbjct: 236 EK-LQSFVNKRIKELTADGTLSKLTKEHLGGDYVPSDKEL 274 >Q9A1E5.1 Q9A1E5_STRP1 Putative uncharacterized protein Length = 280 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 110/280 (39%), Positives = 161/280 (57%), Gaps = 9/280 (3%) Query: 1 MKKRFLPGVFILLLG-VIIAGCGNKSEAGSGAQNDAGAGSKTIVAATSGVSNPFSYDKDG 59 +KK++L I L +++A CG+ A SG Q SK ++ AT G + PFSY+K G Sbjct: 2 IKKQYLGRATIALASTLVLAACGSSKTAESGNQ----GSSKEVLFATVGTTAPFSYEKGG 57 Query: 60 KLTGYDVEVMKAIFEGLPEYKLEVQAIEFEGILTGLDNGRFQLGANNFGSNAERRSKYNF 119 +LTGYD+EV KA+F+G +YK+ + E+ I TGLD+G++Q+G NN ER +KY F Sbjct: 58 QLTGYDIEVAKAVFKGSDDYKVSFKKTEWSSIFTGLDSGKYQMGGNNISFTKERSAKYLF 117 Query: 120 SLPIIENANVFVVRKDDNTLKSVEDLKGYKAVTEVGNSGATLLENYNADHPDAKAEIMYT 179 S PI +V VV KD + +KS +D++G+ G + LE++N H D + +T Sbjct: 118 SYPIGSTPSVLVVPKDSD-IKSFDDIQGHTTQVVQGTTSVAQLEDFNKKHSDNPVTLKFT 176 Query: 180 DENFVKQFEGIEAGRYDVRIISRVSAEKAIKEHGFTNLKVVPFSTENSDPGSYILFSKSA 239 +EN + + G+ D +I + IK G NLK + T P Y +FS+ Sbjct: 177 NENITQMLTNLSEGKADFKIFDAPTVNAIIKNQGLDNLKTIEL-TSTEQPFIYFIFSQDQ 235 Query: 240 DSTLLDAVNKRIKEIYNDGTLLKISEEQLGGDYLPK-KEL 278 + L VNKRIKE+ DGTL K+++E LGGDY+P KEL Sbjct: 236 EK-LQSFVNKRIKELTADGTLSKLAKEHLGGDYVPSDKEL 274 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.134 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,690,510,082 Number of extensions: 72239031 Number of successful extensions: 198964 Number of sequences better than 1.0e-05: 2446 Number of HSP's gapped: 197069 Number of HSP's successfully gapped: 2453 Length of query: 280 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 146 Effective length of database: 1,798,280,193 Effective search space: 262548908178 Effective search space used: 262548908178 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)