BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0013.p (252 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0B9P9.1 C0B9P9_9FIRM Putative uncharacterized protein 285 3e-75 A2RLJ8.1 A2RLJ8_LACLM Putative amino-acid ABC transporter permea... 285 4e-75 Q9CH04.1 Q9CH04_LACLA Amino acid ABC transporter permease protein 282 2e-74 Q02ZS4.1 Q02ZS4_LACLS ABC-type amino acid transport system, perm... 281 3e-74 Q8DVM0.1 Q8DVM0_STRMU Putative amino acid ABC transporter, permease 275 2e-72 >C0B9P9.1 C0B9P9_9FIRM Putative uncharacterized protein Length = 247 Score = 285 bits (729), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 135/233 (57%), Positives = 192/233 (82%) Query: 1 MGKIFDINAVFTSIPRLLEVLPVSLQITVISMIVGLVFALIFAVIRMKKIPVLSQLVTVF 60 MGK+FD VFT IP LL+ LPV++++ V +MI L+ L+ A++++KK+PVL QLV+++ Sbjct: 1 MGKLFDGKLVFTQIPLLLKYLPVTMELAVTAMIASLILGLLLALVKIKKVPVLKQLVSIY 60 Query: 61 ISFIRGTPIIVQLYLTYNGIPLLLKFINQQYGTDYNINAVPAMLFVLVTFAFNEAAYNSE 120 IS IRGTPI+VQLY+TY GIP+LLK+IN + GT+YN+N V +++ V A NE+A+N+E Sbjct: 61 ISVIRGTPILVQLYVTYFGIPMLLKYINFKCGTNYNVNGVAPIVYAFVALALNESAFNAE 120 Query: 121 TIRAALQSVNKGQIEAAESLGMTYLQVLRRVIVPEALVVAIPPLGNALIGLLKGTSLAFV 180 IRA+L+SV+KGQ+EAA +LGM Y Q L R+I+PEA+VVA+P LGNA IGL+KGTSLAFV Sbjct: 121 IIRASLESVDKGQVEAASALGMNYFQALIRIILPEAIVVALPSLGNAFIGLIKGTSLAFV 180 Query: 181 AGVIEMTAKGKIISGSNFRFFEVYLALAIIYWVMTIIIEQILRYLEKRFSIPD 233 V+EMTA+GKI++G N+R+FEVY++LAIIYWV+T ++E+++ YLEK+ +P+ Sbjct: 181 CSVVEMTAEGKILAGRNYRYFEVYISLAIIYWVITFVLERVISYLEKKLRVPE 233 >A2RLJ8.1 A2RLJ8_LACLM Putative amino-acid ABC transporter permease protein Length = 295 Score = 285 bits (728), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 145/240 (60%), Positives = 188/240 (78%) Query: 3 KIFDINAVFTSIPRLLEVLPVSLQITVISMIVGLVFALIFAVIRMKKIPVLSQLVTVFIS 62 KIF +A + +++++P SL++T+I+MI GL+ LI A++R+ KIP+L+QL +F+S Sbjct: 44 KIFSWSAFVDAFVPIIKMIPSSLEMTIIAMIFGLLLGLILALVRINKIPILNQLRALFVS 103 Query: 63 FIRGTPIIVQLYLTYNGIPLLLKFINQQYGTDYNINAVPAMLFVLVTFAFNEAAYNSETI 122 FIRGTPI+VQLYL+Y GIPL+LK IN YGT+YN+N +PAMLFV+V FA NE AYNSETI Sbjct: 104 FIRGTPILVQLYLSYTGIPLILKAINMNYGTNYNVNTIPAMLFVIVAFALNEGAYNSETI 163 Query: 123 RAALQSVNKGQIEAAESLGMTYLQVLRRVIVPEALVVAIPPLGNALIGLLKGTSLAFVAG 182 RAA+QSV+KGQIEAA+SLGMT QV RV +PEA VA PLGNALIGLLK TSLAFVAG Sbjct: 164 RAAIQSVDKGQIEAAKSLGMTNFQVFMRVTLPEAATVATAPLGNALIGLLKSTSLAFVAG 223 Query: 183 VIEMTAKGKIISGSNFRFFEVYLALAIIYWVMTIIIEQILRYLEKRFSIPDPVGQKVNRG 242 V+EMTA+ +II GS FR FE YLALA++YW + II E ++R LE++ + P ++ NR Sbjct: 224 VVEMTARAQIIGGSTFRLFETYLALALVYWPICIIFEILIRALERKLDVRMPNDKRKNRA 283 >Q9CH04.1 Q9CH04_LACLA Amino acid ABC transporter permease protein Length = 295 Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 143/240 (59%), Positives = 188/240 (78%) Query: 3 KIFDINAVFTSIPRLLEVLPVSLQITVISMIVGLVFALIFAVIRMKKIPVLSQLVTVFIS 62 KIF +A + +++++P SL++T+I+M+ GL+ LI A++R+ KIP+L+QL +F+S Sbjct: 44 KIFSWSAFVDAFLPIIKMIPSSLEMTIIAMVFGLLLGLILALVRINKIPILNQLRALFVS 103 Query: 63 FIRGTPIIVQLYLTYNGIPLLLKFINQQYGTDYNINAVPAMLFVLVTFAFNEAAYNSETI 122 FIRGTPI+VQLYL+Y GIPL+LK IN YGT++N+N +PAMLFV+V FA NE AYNSETI Sbjct: 104 FIRGTPILVQLYLSYTGIPLILKAINMNYGTNFNVNTIPAMLFVIVAFALNEGAYNSETI 163 Query: 123 RAALQSVNKGQIEAAESLGMTYLQVLRRVIVPEALVVAIPPLGNALIGLLKGTSLAFVAG 182 RAA+QSV+KGQIEAA+SLGMT QV RV +PEA VA PLGNALIGLLK TSLAFVAG Sbjct: 164 RAAIQSVDKGQIEAAKSLGMTNFQVFMRVTLPEAATVATAPLGNALIGLLKSTSLAFVAG 223 Query: 183 VIEMTAKGKIISGSNFRFFEVYLALAIIYWVMTIIIEQILRYLEKRFSIPDPVGQKVNRG 242 V+EMTA+ +II GS FR FE YLALA++YW + II E ++R LE++ + P ++ NR Sbjct: 224 VVEMTARAQIIGGSTFRLFETYLALALVYWPICIIFELLIRGLERKLDVRMPNDKRKNRA 283 >Q02ZS4.1 Q02ZS4_LACLS ABC-type amino acid transport system, permease component Length = 295 Score = 281 bits (720), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 144/240 (60%), Positives = 187/240 (77%) Query: 3 KIFDINAVFTSIPRLLEVLPVSLQITVISMIVGLVFALIFAVIRMKKIPVLSQLVTVFIS 62 KIF +A + +++++P SL++T+I+MI GL+ LI A++R+ KIP+L+QL +F+S Sbjct: 44 KIFSWSAFVDAFVPIIKMIPSSLEMTIIAMIFGLLLGLILALVRINKIPILNQLRALFVS 103 Query: 63 FIRGTPIIVQLYLTYNGIPLLLKFINQQYGTDYNINAVPAMLFVLVTFAFNEAAYNSETI 122 FIRGTPI+VQLYL+Y GIPL+LK IN YGT+YN+N +PAMLFV+V FA NE AYNSETI Sbjct: 104 FIRGTPILVQLYLSYTGIPLILKAINMNYGTNYNVNTIPAMLFVIVAFALNEGAYNSETI 163 Query: 123 RAALQSVNKGQIEAAESLGMTYLQVLRRVIVPEALVVAIPPLGNALIGLLKGTSLAFVAG 182 RAA+QSV+KGQIEAA+SLGMT QV RV + EA VA PLGNALIGLLK TSLAFVAG Sbjct: 164 RAAIQSVDKGQIEAAKSLGMTNFQVFMRVTLSEAATVATAPLGNALIGLLKSTSLAFVAG 223 Query: 183 VIEMTAKGKIISGSNFRFFEVYLALAIIYWVMTIIIEQILRYLEKRFSIPDPVGQKVNRG 242 V+EMTA+ +II GS FR FE YLALA++YW + II E ++R LE++ + P ++ NR Sbjct: 224 VVEMTARAQIIGGSTFRLFETYLALALVYWPICIIFEILIRALERKLDVRMPNDKRKNRA 283 >Q8DVM0.1 Q8DVM0_STRMU Putative amino acid ABC transporter, permease Length = 267 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 136/233 (58%), Positives = 181/233 (77%) Query: 2 GKIFDINAVFTSIPRLLEVLPVSLQITVISMIVGLVFALIFAVIRMKKIPVLSQLVTVFI 61 GK+F AVF +IP +LE LP +L +T+ I GLV AL+FA++++ ++ +L + F+ Sbjct: 21 GKLFSWRAVFDAIPSILEKLPTTLILTLGGSIFGLVLALLFAIVKLNRVKILYPIQAFFV 80 Query: 62 SFIRGTPIIVQLYLTYNGIPLLLKFINQQYGTDYNINAVPAMLFVLVTFAFNEAAYNSET 121 SF+RGTPI+VQL LTY GIPLLLK +NQ+ GTD+NINA+PA +F + FAFNEAAY SET Sbjct: 81 SFLRGTPILVQLMLTYYGIPLLLKALNQKMGTDFNINAIPASVFAITAFAFNEAAYTSET 140 Query: 122 IRAALQSVNKGQIEAAESLGMTYLQVLRRVIVPEALVVAIPPLGNALIGLLKGTSLAFVA 181 IRAA+QSVN G+IEAA+SLGMT QV RRVI+P A VVA P L N LIGL KGTSLAF A Sbjct: 141 IRAAIQSVNSGEIEAAKSLGMTTAQVYRRVIIPNAAVVATPTLINTLIGLTKGTSLAFNA 200 Query: 182 GVIEMTAKGKIISGSNFRFFEVYLALAIIYWVMTIIIEQILRYLEKRFSIPDP 234 G++EM A+ +I+ GS++R+FE ++++AIIYW ++IIIEQ+ R +EK+ I P Sbjct: 201 GIVEMFAQAQILGGSDYRYFERFISVAIIYWGVSIIIEQVGRLIEKKMEIVSP 253 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.144 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,337,526,727 Number of extensions: 50661910 Number of successful extensions: 237949 Number of sequences better than 1.0e-05: 7941 Number of HSP's gapped: 230564 Number of HSP's successfully gapped: 7951 Length of query: 252 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 120 Effective length of database: 1,817,122,223 Effective search space: 218054666760 Effective search space used: 218054666760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)