BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0012.p (257 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0MGW6.1 C0MGW6_STRS7 ABC transporter ATP-binding protein 345 3e-93 B4U4J5.1 B4U4J5_STREM ABC transporter ATP-binding protein-aspart... 345 3e-93 C0M7A0.1 C0M7A0_STRE4 ABC transporter ATP-binding protein 342 1e-92 A3CPZ3.1 A3CPZ3_STRSV ABC-type polar amino acid transport system... 341 3e-92 Q5M2Y9.1 Q5M2Y9_STRT2 Polar amino acid ABC uptake transporter AT... 341 4e-92 >C0MGW6.1 C0MGW6_STRS7 ABC transporter ATP-binding protein Length = 247 Score = 345 bits (884), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 160/242 (66%), Positives = 204/242 (84%) Query: 8 MIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLDL 67 MI+V+HL+KSF G +LDD++V IEKG V+AL+G+SGAGKSTFLR++N LE+ D G + + Sbjct: 1 MIKVTHLTKSFSGQKVLDDLTVTIEKGQVIALVGASGAGKSTFLRSMNYLEQPDTGSIAI 60 Query: 68 EGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQIA 127 + F +DF IT + L LR++ AMVFQ FNLF+ RTALDNVKEGLKIVKK++D+EA+ IA Sbjct: 61 DDFAVDFEHITKQDMLTLRRKLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDQEATDIA 120 Query: 128 KEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVLQ 187 + +L +VGLS+R ++YP+HLSGGQ+QRV IARALAMKP +LLLDEPTSALDPELVGEV + Sbjct: 121 RAELAKVGLSDRENHYPRHLSGGQKQRVAIARALAMKPDVLLLDEPTSALDPELVGEVER 180 Query: 188 TIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFLQ 247 +I A GQTMILVSH+M+FVY+VA++VLFLDKGKI+EEGTP+++F HPK AR KEF Sbjct: 181 SIIDAAKAGQTMILVSHDMAFVYQVADRVLFLDKGKILEEGTPEQIFRHPKEARTKEFFA 240 Query: 248 NY 249 NY Sbjct: 241 NY 242 >B4U4J5.1 B4U4J5_STREM ABC transporter ATP-binding protein-aspartate/glutamate transport Length = 247 Score = 345 bits (884), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 160/242 (66%), Positives = 204/242 (84%) Query: 8 MIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLDL 67 MI+V+HL+KSF G +LDD++V IEKG V+AL+G+SGAGKSTFLR++N LE+ D G + + Sbjct: 1 MIKVTHLTKSFSGQKVLDDLTVTIEKGQVIALVGASGAGKSTFLRSMNYLEQPDTGSIAI 60 Query: 68 EGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQIA 127 + F +DF IT + L LR++ AMVFQ FNLF+ RTALDNVKEGLKIVKK++D+EA+ IA Sbjct: 61 DDFAVDFEHITKQDMLTLRRKLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDQEATDIA 120 Query: 128 KEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVLQ 187 + +L +VGLS+R ++YP+HLSGGQ+QRV IARALAMKP +LLLDEPTSALDPELVGEV + Sbjct: 121 RAELAKVGLSDRENHYPRHLSGGQKQRVAIARALAMKPDVLLLDEPTSALDPELVGEVER 180 Query: 188 TIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFLQ 247 +I A GQTMILVSH+M+FVY+VA++VLFLDKGKI+EEGTP+++F HPK AR KEF Sbjct: 181 SIIDAAKAGQTMILVSHDMAFVYQVADRVLFLDKGKILEEGTPEQIFRHPKEARTKEFFA 240 Query: 248 NY 249 NY Sbjct: 241 NY 242 >C0M7A0.1 C0M7A0_STRE4 ABC transporter ATP-binding protein Length = 247 Score = 342 bits (878), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 160/242 (66%), Positives = 203/242 (83%) Query: 8 MIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLDL 67 MI+V+HL+KSF G ILDD++V IEKG V+AL+G+SGAGKSTFLR++N LE+ D G + + Sbjct: 1 MIKVTHLTKSFSGQKILDDLTVTIEKGQVIALVGASGAGKSTFLRSMNYLEQPDTGSITI 60 Query: 68 EGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQIA 127 + F +DF IT + L LR++ AMVFQ FNLF+ RTALDNVKEGLKIVKK++D+EA+ IA Sbjct: 61 DDFAVDFEHITKEDILTLRRKLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDQEATDIA 120 Query: 128 KEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVLQ 187 + +L +VGLS+R ++YP+HLSGGQ+QRV IARALAMKP +LLLDEPTSALDPELVGEV + Sbjct: 121 RAELAKVGLSDRENHYPRHLSGGQKQRVAIARALAMKPDVLLLDEPTSALDPELVGEVER 180 Query: 188 TIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFLQ 247 +I A GQTMILVSH+M+FVY+VA++VLFLDKGKI+EEG P+++F HPK AR KEF Sbjct: 181 SIIDAAKAGQTMILVSHDMAFVYQVADRVLFLDKGKILEEGAPEQIFRHPKEARTKEFFA 240 Query: 248 NY 249 NY Sbjct: 241 NY 242 >A3CPZ3.1 A3CPZ3_STRSV ABC-type polar amino acid transport system, ATPase component, putative EC=3.6.3.21 Length = 247 Score = 341 bits (875), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 161/245 (65%), Positives = 206/245 (84%) Query: 8 MIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLDL 67 MI +SHLSK+F G +LDD+S++I+KG+VVALIGSSGAGKSTFLR+LN LE+ D G + + Sbjct: 1 MINISHLSKTFSGQKVLDDLSLDIQKGEVVALIGSSGAGKSTFLRSLNYLEQPDSGKITI 60 Query: 68 EGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQIA 127 +GFK+DFS I+ + L LR++ AMVFQ FNLF RTAL+NVKEGL +VKK++D+EA++IA Sbjct: 61 DGFKVDFSRISKDEILLLRRKLAMVFQQFNLFSRRTALENVKEGLLVVKKLSDQEATKIA 120 Query: 128 KEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVLQ 187 KE+L +VGLS+R ++YP+HLSGGQ+QRV +ARALAM P +LLLDEPTSALDPELVGEV + Sbjct: 121 KEELAKVGLSDRENHYPRHLSGGQKQRVALARALAMNPDVLLLDEPTSALDPELVGEVEK 180 Query: 188 TIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFLQ 247 +I A +GQTMILVSH+MSFV +VA++VLFLDKGKI+E GTPDE+ +HPK R KEF Sbjct: 181 SIADAAKSGQTMILVSHDMSFVAQVADRVLFLDKGKIIESGTPDEIIHHPKEERTKEFFA 240 Query: 248 NYFRN 252 +Y R Sbjct: 241 SYKRT 245 >Q5M2Y9.1 Q5M2Y9_STRT2 Polar amino acid ABC uptake transporter ATP-binding protein Length = 247 Score = 341 bits (874), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 159/242 (65%), Positives = 202/242 (83%) Query: 8 MIRVSHLSKSFHGNLILDDISVEIEKGDVVALIGSSGAGKSTFLRALNCLEKADQGVLDL 67 MI + +L+K F G +LD I ++IEKG+VVAL+G+SGAGKST LR LN LE+ D G + + Sbjct: 1 MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAI 60 Query: 68 EGFKIDFSTITGKQRLELRKQTAMVFQHFNLFQHRTALDNVKEGLKIVKKMNDREASQIA 127 + FK+DF TIT +Q L LR++ AMVFQ FNLF+ RTALDNVKEGLKIVKK++D EA++IA Sbjct: 61 DDFKVDFETITKEQILTLRRKLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIA 120 Query: 128 KEQLEQVGLSERAHYYPKHLSGGQQQRVGIARALAMKPKLLLLDEPTSALDPELVGEVLQ 187 KE+L +VGLS R +YYP+HLSGGQ+QRV +ARALAM+P +LLLDEPTSALDPELVGEV + Sbjct: 121 KEELTKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDVLLLDEPTSALDPELVGEVEK 180 Query: 188 TIKKTAATGQTMILVSHEMSFVYEVANKVLFLDKGKIVEEGTPDEVFNHPKSARAKEFLQ 247 +I A +GQTMILVSH+M+F+Y+VA+KVLFL+KG I+E+GTPDE+FNHPK R KEF Sbjct: 181 SIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA 240 Query: 248 NY 249 +Y Sbjct: 241 SY 242 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,404,661,898 Number of extensions: 54354693 Number of successful extensions: 576788 Number of sequences better than 1.0e-05: 100403 Number of HSP's gapped: 407037 Number of HSP's successfully gapped: 111040 Length of query: 257 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 124 Effective length of database: 1,807,701,208 Effective search space: 224154949792 Effective search space used: 224154949792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)