BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0010.p (323 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D5G1.1 B1D5G1_9BACL Binding-protein-dependent transport system... 516 e-144 Q9S304.1 Q9S304_RUMFL Putative ABC-type Sugar Transporter 397 e-109 A2RKE7.1 A2RKE7_LACLM Putative membrane protein 258 6e-67 A9QS64.1 A9QS64_LACLA Sugar ABC-type transport system permease 247 9e-64 A7VCB2.1 A7VCB2_9CLOT Putative uncharacterized protein 243 1e-62 >B1D5G1.1 B1D5G1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 324 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 247/306 (80%), Positives = 284/306 (92%), Gaps = 2/306 (0%) Query: 1 MRRKGVNYSKFGYIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLIPKPVHILDNPFQNF 60 MRRKGVNYSK+GYIF++PF+LAFLIFSLYP LYTA IGFT+M+G+IPKPVHILDNPF NF Sbjct: 1 MRRKGVNYSKYGYIFSIPFILAFLIFSLYPTLYTAFIGFTDMKGVIPKPVHILDNPFGNF 60 Query: 61 KDLLFDNVSFRKSLINTGLLWIVNFIPQIVLALLLTAWFTNKRLNIKGQGAFKVLLYMPN 120 KDL+ +NVSF++SL+NT +LWI NFIPQI LALLLTAWFTN+RLN+KGQG FKVLLYMPN Sbjct: 61 KDLILNNVSFKQSLVNTFVLWIANFIPQIGLALLLTAWFTNRRLNVKGQGVFKVLLYMPN 120 Query: 121 IITAGTIAVLFSSLFAYPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMWYGN 180 IITA TIAVLFS+LFAYPMGPVNS+F LGWSDAPI FLQDK TARGIV+FIQFWMWYGN Sbjct: 121 IITASTIAVLFSTLFAYPMGPVNSLFHALGWSDAPIQFLQDKNTARGIVSFIQFWMWYGN 180 Query: 181 TMIVLVAGVMGINPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTMFDI 240 TMI+L+AGVMGINPALFE+AAIDGA G QTFFR+TLPSLRTILL++L+TSM+GGL MFDI Sbjct: 181 TMIILIAGVMGINPALFEAAAIDGATGTQTFFRVTLPSLRTILLYSLVTSMIGGLQMFDI 240 Query: 241 PQLFL--AGGPDDSTLTTSMFIYGQAFKGSYMYNRAAAASMIMFVIAAILSGLVFYLMRD 298 PQLF+ AGGPD++TLTTS+FIYGQAFKG+YMYN+AAAASMIMF+IAA+LS L+FYLMRD Sbjct: 241 PQLFITPAGGPDNATLTTSVFIYGQAFKGAYMYNKAAAASMIMFLIAAVLSALLFYLMRD 300 Query: 299 RDAGRM 304 R ++ Sbjct: 301 RGEAKL 306 >Q9S304.1 Q9S304_RUMFL Putative ABC-type Sugar Transporter Length = 330 Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust. Identities = 188/304 (61%), Positives = 248/304 (81%), Gaps = 2/304 (0%) Query: 2 RRKGVNYSKFGYIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLI-PKPVHILDNPFQNF 60 + KG++YSK+GY+F++PF++AFLIF+LYP +YTA +GFT+ +G+ P+ H LD PF+NF Sbjct: 4 KLKGISYSKYGYLFSIPFIVAFLIFTLYPTIYTATLGFTDCKGVNGPENYHFLDKPFENF 63 Query: 61 KDLLFDNVSFRKSLINTGLLWIVNFIPQIVLALLLTAWFTNKRLNIKGQGAFKVLLYMPN 120 K +L +N +FR SL NT L+WI+NFIPQI +ALLLTAWFT+ I+G+G FKV+ YMPN Sbjct: 64 KSIL-ENDTFRISLKNTILIWIMNFIPQISIALLLTAWFTSHSNEIRGKGFFKVVFYMPN 122 Query: 121 IITAGTIAVLFSSLFAYPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMWYGN 180 IITA T+A+LF +LF YP+GPVN E G ++P +F KT R IVAFIQFW WYGN Sbjct: 123 IITAATVAILFHTLFNYPIGPVNDFLESTGLRESPYYFFTSKTACRIIVAFIQFWTWYGN 182 Query: 181 TMIVLVAGVMGINPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTMFDI 240 TMIVL++GV+GI+P ++E+A IDGANG QTFFRIT+P+L+T+LL+TLITS+VGGL MFDI Sbjct: 183 TMIVLISGVLGISPDIYEAAEIDGANGVQTFFRITIPNLKTVLLYTLITSLVGGLNMFDI 242 Query: 241 PQLFLAGGPDDSTLTTSMFIYGQAFKGSYMYNRAAAASMIMFVIAAILSGLVFYLMRDRD 300 P LFL GGPD +T TTS+FIY QAF GSY+YN+AAAASMIM+VI A+ S ++F++MRD+D Sbjct: 243 PFLFLNGGPDRATTTTSVFIYNQAFAGSYLYNKAAAASMIMWVIIALCSAVLFFVMRDKD 302 Query: 301 AGRM 304 ++ Sbjct: 303 QIKL 306 >A2RKE7.1 A2RKE7_LACLM Putative membrane protein Length = 319 Score = 258 bits (658), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 141/298 (47%), Positives = 194/298 (65%), Gaps = 4/298 (1%) Query: 8 YSKFGYIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLIPKPVHILDNPFQNFKDLLFDN 67 Y++FGY F +PF + F++F LYPI+Y+ I FT+M G + NF LL + Sbjct: 17 YNRFGYYFLIPFFVGFIVFQLYPIIYSIAISFTSMNGF-QTFSEATNVGLGNFSTLLKNT 75 Query: 68 VSFRKSLINTGLLWIVNFIPQIVLALLLTAWFTNKRLNIKGQGAFKVLLYMPNIITAGTI 127 F S+ NT LLW +NF+PQI++AL+L AW+TN++LN+KG +K + Y+PN+I A +I Sbjct: 76 PLFITSIQNTLLLWGMNFVPQILMALILAAWWTNRKLNLKGNSFWKTVFYLPNMIMAASI 135 Query: 128 AVLFSSLFAYPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMWYGNTMIVLVA 187 A LF +F YP GP N + L P F Q R I+ F+QFWMWYG+T IVLVA Sbjct: 136 AALFLGIFGYPNGPANLLLTNLHIISHPFNFFQSIWGTRSIIIFLQFWMWYGSTAIVLVA 195 Query: 188 GVMGINPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTMFDIPQLFL-- 245 G+ I+ ALFE+A IDGA+ Q F +ITLP LR I+++T +TS VGGL +FDIP L Sbjct: 196 GISSIDDALFEAARIDGASDGQIFRKITLPLLRPIVMYTFVTSFVGGLQVFDIPYLLSSG 255 Query: 246 AGGPDDSTLTTSMFIYGQAFKGSYMYNRAAAASMIMFVIAAILSGLVFYLMRDRDAGR 303 +GGP +ST T +MFIY QAF+ Y AAAAS+I+ +I AI+S +F R+R + + Sbjct: 256 SGGPQNSTYTLAMFIYNQAFQYR-NYGIAAAASVILLIIVAIVSIALFRFFRERTSNK 312 >A9QS64.1 A9QS64_LACLA Sugar ABC-type transport system permease Length = 315 Score = 247 bits (631), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 135/284 (47%), Positives = 182/284 (64%), Gaps = 5/284 (1%) Query: 1 MRRKGVN---YSKFGYIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLIPKPVHILDNPF 57 +R+K N Y++FGY F +PF + FL+F+LYP++Y+ I FT+M G + Sbjct: 8 VRKKKSNFEKYNRFGYYFLIPFFVGFLLFTLYPMIYSIAISFTSMNGW-QSFSDATNVGL 66 Query: 58 QNFKDLLFDNVSFRKSLINTGLLWIVNFIPQIVLALLLTAWFTNKRLNIKGQGAFKVLLY 117 QNF LL F K+L N+ LWI FIPQ++LAL+L AW+TN++LN+KG G FK + Y Sbjct: 67 QNFITLLTSTPLFMKALGNSVTLWIFTFIPQVLLALILAAWWTNRKLNLKGSGFFKTVFY 126 Query: 118 MPNIITAGTIAVLFSSLFAYPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMW 177 +PN+I A +IA LF +F YP G N + + L + P F Q RGIV FIQFWMW Sbjct: 127 LPNMIMAASIAALFGGIFGYPTGLANLLLQNLHLINHPFNFFQSVWGTRGIVIFIQFWMW 186 Query: 178 YGNTMIVLVAGVMGINPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTM 237 YG T IV +AG+ I+ LFE+A IDGA+ Q F RITLP LR I+L+T +TS +GGL + Sbjct: 187 YGQTSIVYIAGITSIDEGLFEAARIDGASDGQIFRRITLPLLRPIVLYTFVTSFIGGLQV 246 Query: 238 FDIPQLFLAGGPDDSTLTTSMFIYGQAFKGSYMYNRAAAASMIM 281 FDIP + GGP + T S+FIY QAF Y A+AAS+++ Sbjct: 247 FDIPFIMTQGGPQNGVYTLSIFIYNQAF-AYRNYGLASAASVLL 289 >A7VCB2.1 A7VCB2_9CLOT Putative uncharacterized protein Length = 314 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 150/315 (47%), Positives = 201/315 (63%), Gaps = 22/315 (6%) Query: 2 RRKGVNYSKFGYIFTLPFVLAFLIFSLYPILYTAVIGFTNMQGLIPKPVHILDNP--FQN 59 + K V Y K+G +F +PF L FL+F LYP+LYT F N K + N Sbjct: 3 KNKTVEYGKYGLLFLIPFFLVFLVFQLYPLLYT----FYNSLIYSAKNGRYVTETVGLGN 58 Query: 60 FKDLLFDNV--SFRKSLINTGLLWIVNFIPQIVLALLLTAWFTNKRLNIKGQGAFKVLLY 117 F + +F F +SL+ T +LWI+NFIPQI+LALLL AWFT+ ++ +KG G +KV++Y Sbjct: 59 FTNYVFAKTGSEFWQSLMVTVVLWILNFIPQILLALLLAAWFTDIKIKLKGSGIYKVIMY 118 Query: 118 MPNIITAGTIAVLFSSLFAYPMGPVNSIFEMLGWSDAPIFFLQDKTTARGIVAFIQFWMW 177 MPNIITA TIAVLF LF GP+ +IF+ LGW D L + I+AFIQFWMW Sbjct: 119 MPNIITAATIAVLFYGLFEVN-GPITTIFKDLGWCDKG-GILNHGWASLIIIAFIQFWMW 176 Query: 178 YGNTMIVLVAGVMGINPALFESAAIDGANGFQTFFRITLPSLRTILLFTLITSMVGGLTM 237 YGNTMIVL AG++GINP+L+E+A++DGA+ Q FF+ITLP L+ IL +TL+TS +GGL M Sbjct: 177 YGNTMIVLCAGILGINPSLYEAASVDGASSKQQFFKITLPLLKPILQYTLVTSAIGGLQM 236 Query: 238 FDIPQLFLAGGP---------DDSTLTTSMFI--YGQAFKGSYMYNRAAAASMIMFVIAA 286 +DIPQLF GGP +ST T M I Y A G+ Y +AAA S+++F Sbjct: 237 YDIPQLFNEGGPVVVTGSGSSVNSTTTVVMLIKKYVSA-GGTQDYGKAAAYSVMLFAFTL 295 Query: 287 ILSGLVFYLMRDRDA 301 I+S L + L ++ + Sbjct: 296 IISLLFYRLTAEKSS 310 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.145 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,783,226,396 Number of extensions: 75171737 Number of successful extensions: 278773 Number of sequences better than 1.0e-05: 5605 Number of HSP's gapped: 273464 Number of HSP's successfully gapped: 5605 Length of query: 323 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 187 Effective length of database: 1,779,438,163 Effective search space: 332754936481 Effective search space used: 332754936481 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 131 (55.1 bits)