BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0009.p (284 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D5G0.1 B1D5G0_9BACL Binding-protein-dependent transport system... 449 e-124 A7VCB3.1 A7VCB3_9CLOT Putative uncharacterized protein 248 5e-64 A8S7M9.1 A8S7M9_9FIRM Putative uncharacterized protein 240 1e-61 C0C7D9.1 C0C7D9_9FIRM Putative uncharacterized protein 240 1e-61 C4ZGP1.1 C4ZGP1_9FIRM Sugar ABC transporter permease 236 2e-60 >B1D5G0.1 B1D5G0_9BACL Binding-protein-dependent transport systems inner membrane component Length = 284 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 217/284 (76%), Positives = 244/284 (85%) Query: 1 MDHNHKNGTVTRKINKTIIYIVCIFLAVLSILPFWIMFVNATRSTAEIQSGLSLLPSTHM 60 M + TV+R INKTIIYIVCI LA+LSILPFW+MFVNATRSTAEIQSGLSL+PSTH+ Sbjct: 1 MAKIERTATVSRGINKTIIYIVCIGLALLSILPFWVMFVNATRSTAEIQSGLSLIPSTHL 60 Query: 61 MSNLRVLLDKSFDPIQGFLNSFTISSSATILTVYFSSLAAYGLVTYDWKLRKPFFTFILC 120 +N VL KSFDP++GFLNSF IS+++T+ VYFSSL AYGLV Y+WK R+ FFTFILC Sbjct: 61 KTNWDVLTSKSFDPLKGFLNSFIISATSTVCAVYFSSLTAYGLVVYNWKWRQTFFTFILC 120 Query: 121 VMMIPSQASAIGFYQFMYKIHWTNSXXXXXXXXXXXXXXXXXMRQYLLATLSIEIVEAAR 180 VMMIP+QASAIGFYQFMY++HWTNS MRQYLLATLS+EIVEA+R Sbjct: 121 VMMIPAQASAIGFYQFMYQLHWTNSFLPLILPAIAAPAIVFFMRQYLLATLSLEIVEASR 180 Query: 181 VDGSGEFRTFNRIILPLMMPAVATQAIFAFVANWNNLFMPLILLTQKEKYTMPVMVSLLR 240 +DGSGEF TFN+II+P+MMPAVATQAIFAFVA+WNNLFMPLILLT K KYT+PVMVSLLR Sbjct: 181 IDGSGEFATFNKIIIPIMMPAVATQAIFAFVASWNNLFMPLILLTDKSKYTLPVMVSLLR 240 Query: 241 GDIYKTEFGSIYMGLALTALPLFVVYFLLSRYIIAGVALGGVKE 284 GDIYKTEFGSIYMGLALTALPLFV+YFLLSRYIIAGVALGGVKE Sbjct: 241 GDIYKTEFGSIYMGLALTALPLFVIYFLLSRYIIAGVALGGVKE 284 >A7VCB3.1 A7VCB3_9CLOT Putative uncharacterized protein Length = 289 Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 129/276 (46%), Positives = 176/276 (63%), Gaps = 6/276 (2%) Query: 15 NKTIIYIVCIFLAVLSILPFWIMFVNATRSTAEIQSGLSLLPSTHMMSNLRVLLDKS--- 71 K + Y+VCI L LSILPF+I+ +N+T + EI +G+ L+P ++N + LL S Sbjct: 14 GKIVRYVVCILLCFLSILPFYILIINSTLKSTEIVTGIKLIPGGEFITNFKGLLAGSEKT 73 Query: 72 --FDPIQGFLNSFTISSSATILTVYFSSLAAYGLVTYDWKLRKPFFTFILCVMMIPSQAS 129 + +Q LNS ++ AT L +YF SL AY + Y++KL+K + FI +MMIP Q S Sbjct: 74 SGVNVLQAMLNSLLVTVPATALQIYFGSLTAYAVTVYNFKLKKFAWGFIYAIMMIPQQVS 133 Query: 130 AIGFYQFMYKIHWTNSXXXXXXXXXXXXXXXXXMRQYLLATLSIEIVEAARVDGSGEFRT 189 +GF + H S M+QY+ LS+EIVEAAR+DGSGE T Sbjct: 134 IVGFIKICNLTHLYGSFLSLIIPAIAAPTTVYFMKQYMETGLSVEIVEAARIDGSGEIHT 193 Query: 190 FNRIILPLMMPAVATQAIFAFVANWNNLFMP-LILLTQKEKYTMPVMVSLLRGDIYKTEF 248 FN I+LPL+ PA+ATQAIF FVA+WNNL+ P +IL T+++K TMP+ VS L+ + ++ Sbjct: 194 FNTIVLPLLKPAMATQAIFGFVASWNNLYTPSIILATERQKQTMPMYVSALKANDKSRDW 253 Query: 249 GSIYMGLALTALPLFVVYFLLSRYIIAGVALGGVKE 284 G IY GL T LP+ V+YF LS+YIIAGVALGGVKE Sbjct: 254 GQIYCGLFTTVLPILVMYFFLSKYIIAGVALGGVKE 289 >A8S7M9.1 A8S7M9_9FIRM Putative uncharacterized protein Length = 288 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 121/287 (42%), Positives = 185/287 (64%), Gaps = 4/287 (1%) Query: 1 MDHNHKNGTVTRKI--NKTIIYIVCIFLAVLSILPFWIMFVNATRSTAEIQSGLSLLPST 58 M H KN + + + Y+V + ++ L + F+++ +N+TR+ EIQ G SL+P Sbjct: 1 MAHTPKNQSEKAILTARRAWCYLVLVLISFLCLFFFYVLIINSTRTHFEIQKGFSLMPGK 60 Query: 59 HMMSNLR-VLLDKSFDPIQGFLNSFTISSSATILTVYFSSLAAYGLVTYDWKLRKPFFTF 117 +++N R VL D + + G NS +S+ + L+VYFS+L AYG+ Y++K +K F Sbjct: 61 SIITNFRNVLTDANIPVVSGIRNSLLVSACSAALSVYFSALTAYGIYAYNFKFKKAAFAL 120 Query: 118 ILCVMMIPSQASAIGFYQFMYKIHWTNSXXXXXXXXXXXXXXXXXMRQYLLATLSIEIVE 177 IL +M +P+Q SA+GF Q + K+ NS M+QYL A+L +EIVE Sbjct: 121 ILLIMTMPTQVSALGFLQLISKMGLKNSFIPLIVPSIAAPTVFFFMKQYLDASLPMEIVE 180 Query: 178 AARVDGSGEFRTFNRIILPLMMPAVATQAIFAFVANWNNLFMPLILLTQKEKYTMPVMVS 237 AAR+DG+GEF TFN+I+LP+M PA+A QAIF+FVA+WNN F+P ++L +K T+P++++ Sbjct: 181 AARIDGAGEFYTFNKIVLPIMKPALAVQAIFSFVASWNNYFIPALVLDTADKKTLPILIA 240 Query: 238 LLR-GDIYKTEFGSIYMGLALTALPLFVVYFLLSRYIIAGVALGGVK 283 LR D K + G +YM +A+ LP+ +VY LLS++I+ GVALGGVK Sbjct: 241 QLRSADFLKFDMGKVYMMVAIAILPVIIVYLLLSKFIVRGVALGGVK 287 >C0C7D9.1 C0C7D9_9FIRM Putative uncharacterized protein Length = 281 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 121/276 (43%), Positives = 177/276 (64%), Gaps = 2/276 (0%) Query: 11 TRKINKTIIYIVCIFLAVLSILPFWIMFVNATRSTAEIQSGLSLLPSTHMMSNLR-VLLD 69 ++ + Y+V I L+ L + F+I+ VNATRS A++Q G S LP + + NL+ V D Sbjct: 6 NKRAETILAYLVLIVLSFLCLFFFYILLVNATRSHADLQKGFSWLPGNYFLENLKNVAND 65 Query: 70 KSFDPIQGFLNSFTISSSATILTVYFSSLAAYGLVTYDWKLRKPFFTFILCVMMIPSQAS 129 SF +G NS +S+ + L YFS+L AYGL Y +KL+K FTFI+ ++++P+Q + Sbjct: 66 GSFPMFKGIFNSLVVSTCSAALCTYFSALTAYGLYAYQFKLKKVAFTFIMAILVMPTQVT 125 Query: 130 AIGFYQFMYKIHWTNSXXXXXXXXXXXXXXXXXMRQYLLATLSIEIVEAARVDGSGEFRT 189 A+GF + M I +S M YL ++L + +VEAAR+DGSGEF T Sbjct: 126 AMGFLRLMTNIGLYDSLMPLIIPSIASPAVFYFMYSYLESSLPLSLVEAARIDGSGEFMT 185 Query: 190 FNRIILPLMMPAVATQAIFAFVANWNNLFMPLILLTQKEKYTMPVMVSLLRG-DIYKTEF 248 FNRI+LP+M PAVA QAIF FV +WNN F+P +++ K+K T+P++++ LRG D + Sbjct: 186 FNRIVLPIMKPAVAVQAIFTFVGSWNNYFVPALIIQSKDKMTVPILIATLRGADYMNFDM 245 Query: 249 GSIYMGLALTALPLFVVYFLLSRYIIAGVALGGVKE 284 G IYM + + +P+ +VY LLS+YIIAG+ LGGVKE Sbjct: 246 GKIYMMITVAIVPIIIVYLLLSKYIIAGITLGGVKE 281 >C4ZGP1.1 C4ZGP1_9FIRM Sugar ABC transporter permease Length = 287 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 113/281 (40%), Positives = 179/281 (63%), Gaps = 1/281 (0%) Query: 4 NHKNGTVTRKINKTIIYIVCIFLAVLSILPFWIMFVNATRSTAEIQSGLSLLPSTHMMSN 63 N K + + + YIV + ++ + F++M +NATRS E+QSG + +PSTH++ N Sbjct: 6 NKKKKGMGIHARRALAYIVLVIISFFCLFWFYVMIINATRSNGELQSGFTAIPSTHLLDN 65 Query: 64 LRVLLDKSFDPIQGFLNSFTISSSATILTVYFSSLAAYGLVTYDWKLRKPFFTFILCVMM 123 LL + I+G NS +++ + +L VYFS++ AY + Y++K +K TFIL VMM Sbjct: 66 WNSLLHDTLPVIRGMFNSLFVAACSAVLCVYFSTMTAYAIHAYEFKAKKFISTFILMVMM 125 Query: 124 IPSQASAIGFYQFMYKIHWTNSXXXXXXXXXXXXXXXXXMRQYLLATLSIEIVEAARVDG 183 IP+Q +A+GF + + + +S M+QY+ ++L + ++EAAR+DG Sbjct: 126 IPTQVTALGFVKLVTGMGLMDSFIPLIVPTIASPVTYFYMKQYMESSLPLSLIEAARIDG 185 Query: 184 SGEFRTFNRIILPLMMPAVATQAIFAFVANWNNLFMPLILLTQKEKYTMPVMVSLLR-GD 242 SGEFRTFN I+LPLM PA+A QAIF+FV++WNN F P ++L + K T+P++++ LR D Sbjct: 186 SGEFRTFNHIVLPLMKPAIAVQAIFSFVSSWNNYFTPALILHENNKKTLPILLAQLRSAD 245 Query: 243 IYKTEFGSIYMGLALTALPLFVVYFLLSRYIIAGVALGGVK 283 K + G +YM + + LP+ VVY +LS++I+ GVA+G VK Sbjct: 246 FLKFDMGKVYMMITFSILPVIVVYLILSKHIVGGVAMGSVK 286 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,430,777,465 Number of extensions: 50250767 Number of successful extensions: 204946 Number of sequences better than 1.0e-05: 5713 Number of HSP's gapped: 197261 Number of HSP's successfully gapped: 5723 Length of query: 284 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 150 Effective length of database: 1,798,280,193 Effective search space: 269742028950 Effective search space used: 269742028950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)