BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0008.p (333 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LWA0.1 A6LWA0_CLOB8 Sensor protein EC=2.7.13.3 297 1e-78 C1FVA2.1 C1FVA2_CLOBJ Sensor histidine kinase EC=2.7.3.- 282 3e-74 B1Q716.1 B1Q716_CLOBO Sensor protein EC=2.7.13.3 281 7e-74 C3L2J3.1 C3L2J3_CLOB6 Sensor histidine kinase EC=2.7.3.- 280 2e-73 B1QNQ2.1 B1QNQ2_CLOBO Sensor protein EC=2.7.13.3 280 2e-73 >A6LWA0.1 A6LWA0_CLOB8 Sensor protein EC=2.7.13.3 Length = 344 Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 143/274 (52%), Positives = 188/274 (68%), Gaps = 2/274 (0%) Query: 56 RKILAPIADLIKAAKEVSRGNFDIHLDES--HRVGEISDVAHHFNIMVQELRSIETLRND 113 +KILAP+ +A EV +GNF+I LDE + V E+ ++ +FNIMV EL +IET R+D Sbjct: 70 KKILAPLVKFSEAIMEVGKGNFNIKLDEDKYYYVEELKKMSQNFNIMVDELNNIETFRSD 129 Query: 114 FVVNVSHEFKTPLAAIEGYATLLQDDSLSKEEHDEYTGMIIDSARQLSALSGNILKISKX 173 F+ NVSHEFKTPLA+IEGY TLLQD++LSKEE +YT I+++ ++LS+L G+IL+IS+ Sbjct: 130 FIANVSHEFKTPLASIEGYTTLLQDNNLSKEEKSKYTDKILNNTKRLSSLVGSILQISRL 189 Query: 174 XXXXXXXXXXXYXXXXXXXXXXXXXXSAWEPKQLNLNIDLDELHYYGNEELMMQVWLNVL 233 + S W K ++L+IDLD + ++GNEEL+MQVW+N+L Sbjct: 190 ENQDIIAERSRFKLDEQLRQTLLLLESKWSNKNIDLDIDLDSITFHGNEELLMQVWINIL 249 Query: 234 GNAIKFTPEGGEISVSLRPDGPWISAVIADTGIGMTPKVRKHIFEKFYQGDPARSAEGNG 293 NAIKFTPE G I +L+ D WI+ I+D GIGM +KHIF+KFYQGD + S+EGNG Sbjct: 250 SNAIKFTPEDGTIRCTLKKDKNWITTSISDNGIGMNEDTQKHIFDKFYQGDKSHSSEGNG 309 Query: 294 LGLPLVARIISLSGGRIEVSSEPGVGSAFTIKLP 327 LGL LV RII L GG+IEV SE GS F IKLP Sbjct: 310 LGLALVKRIIDLCGGKIEVYSECKKGSTFVIKLP 343 >C1FVA2.1 C1FVA2_CLOBJ Sensor histidine kinase EC=2.7.3.- Length = 342 Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 147/327 (44%), Positives = 200/327 (61%), Gaps = 2/327 (0%) Query: 1 VFVIVVSFLLVMAILAYLYIRLGNDAMQHRNPFPPVLTIILFSLXXXXXXXXXXXRKILA 60 VF IV S +++ ++ R + NP + + + S+ +K+L+ Sbjct: 17 VFFIVTSAVVISGLVVVFLSRF--NVFTQPNPLILLGWLGIISIMVSTAIAQIIGKKVLS 74 Query: 61 PIADLIKAAKEVSRGNFDIHLDESHRVGEISDVAHHFNIMVQELRSIETLRNDFVVNVSH 120 PI+DL KA KEV++GNF+I L ES EI ++AH FNIM EL +IETLR+DF+ NVSH Sbjct: 75 PISDLNKATKEVAKGNFNIRLSESSWTDEIREMAHSFNIMTHELGNIETLRDDFISNVSH 134 Query: 121 EFKTPLAAIEGYATLLQDDSLSKEEHDEYTGMIIDSARQLSALSGNILKISKXXXXXXXX 180 EFKTP++AIEGYATLLQDD LS EE EY I+ S ++LS+LSGNIL+I++ Sbjct: 135 EFKTPISAIEGYATLLQDDELSDEERREYIHKILISTKRLSSLSGNILQITELENQKILP 194 Query: 181 XXXXYXXXXXXXXXXXXXXSAWEPKQLNLNIDLDELHYYGNEELMMQVWLNVLGNAIKFT 240 Y W K + L+I+LD + Y G++EL+ QVW N+LGNAIKF+ Sbjct: 195 LEQKYYLDEQIRQTILLFEYQWTKKNITLDINLDNITYIGSKELLAQVWQNILGNAIKFS 254 Query: 241 PEGGEISVSLRPDGPWISAVIADTGIGMTPKVRKHIFEKFYQGDPARSAEGNGLGLPLVA 300 + G I V+L + I D GIGM+ +V+ +FEKFYQGD + +EGNGLGL LV Sbjct: 255 HQNGTIQVTLTQTNEEVLITIKDNGIGMSEEVKDRVFEKFYQGDSSHYSEGNGLGLALVK 314 Query: 301 RIISLSGGRIEVSSEPGVGSAFTIKLP 327 RII + G IE+SS GVG+ F +KLP Sbjct: 315 RIIDICEGTIEISSHEGVGTDFIVKLP 341 >B1Q716.1 B1Q716_CLOBO Sensor protein EC=2.7.13.3 Length = 342 Score = 281 bits (718), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 146/327 (44%), Positives = 200/327 (61%), Gaps = 2/327 (0%) Query: 1 VFVIVVSFLLVMAILAYLYIRLGNDAMQHRNPFPPVLTIILFSLXXXXXXXXXXXRKILA 60 VF IV S +++ ++ R + NP + + + S+ +K+L+ Sbjct: 17 VFFIVTSAVVISGLVVVFLSRF--NVFTQPNPLILLGWLGIISIMVSTAIAQIIGKKVLS 74 Query: 61 PIADLIKAAKEVSRGNFDIHLDESHRVGEISDVAHHFNIMVQELRSIETLRNDFVVNVSH 120 PI+DL KA KEV++GNF+I L ES EI ++AH FNIM EL +IETLR+DF+ NVSH Sbjct: 75 PISDLNKATKEVAKGNFNIRLSESSWTDEIREMAHSFNIMTHELGNIETLRDDFISNVSH 134 Query: 121 EFKTPLAAIEGYATLLQDDSLSKEEHDEYTGMIIDSARQLSALSGNILKISKXXXXXXXX 180 EFKTP++AIEGYATLLQDD LS EE EY I+ S ++LS+LSGNIL+I++ Sbjct: 135 EFKTPISAIEGYATLLQDDELSDEERREYIHKILISTKRLSSLSGNILQITELENQKILP 194 Query: 181 XXXXYXXXXXXXXXXXXXXSAWEPKQLNLNIDLDELHYYGNEELMMQVWLNVLGNAIKFT 240 Y W K + L+I+LD + Y G++EL+ QVW N+LGNAIKF+ Sbjct: 195 LEQKYYLDEQIRQTILLFEYQWTKKNITLDINLDNITYIGSKELLAQVWQNILGNAIKFS 254 Query: 241 PEGGEISVSLRPDGPWISAVIADTGIGMTPKVRKHIFEKFYQGDPARSAEGNGLGLPLVA 300 + G I V+L + I D GIGM+ +V+ +FEKFYQGD + ++GNGLGL LV Sbjct: 255 HQNGTIQVTLTQTNEEVLITIKDNGIGMSEEVKDRVFEKFYQGDSSHYSDGNGLGLALVK 314 Query: 301 RIISLSGGRIEVSSEPGVGSAFTIKLP 327 RII + G IE+SS GVG+ F +KLP Sbjct: 315 RIIDICEGTIEISSHEGVGTDFIVKLP 341 >C3L2J3.1 C3L2J3_CLOB6 Sensor histidine kinase EC=2.7.3.- Length = 342 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/327 (44%), Positives = 199/327 (60%), Gaps = 2/327 (0%) Query: 1 VFVIVVSFLLVMAILAYLYIRLGNDAMQHRNPFPPVLTIILFSLXXXXXXXXXXXRKILA 60 VF IV S +++ ++ R + NP + + + S+ +K+L+ Sbjct: 17 VFFIVTSAVVISGLVVVFLSRF--NVFTQPNPLILLGWLGIISIMVSTAIAQIIGKKVLS 74 Query: 61 PIADLIKAAKEVSRGNFDIHLDESHRVGEISDVAHHFNIMVQELRSIETLRNDFVVNVSH 120 PI+DL KA KEV++GNF+ L ES EI ++AH FNIM EL +IETLR+DF+ NVSH Sbjct: 75 PISDLNKATKEVAKGNFNTRLSESSWTDEIREMAHSFNIMTHELGNIETLRDDFISNVSH 134 Query: 121 EFKTPLAAIEGYATLLQDDSLSKEEHDEYTGMIIDSARQLSALSGNILKISKXXXXXXXX 180 EFKTP++AIEGYATLLQDD LS EE EY I+ S ++LS+LSGNIL+I++ Sbjct: 135 EFKTPISAIEGYATLLQDDELSDEERREYIHKILISTKRLSSLSGNILQITELENQKILP 194 Query: 181 XXXXYXXXXXXXXXXXXXXSAWEPKQLNLNIDLDELHYYGNEELMMQVWLNVLGNAIKFT 240 Y W K + L+I+LD + Y G++EL+ QVW N+LGNAIKF+ Sbjct: 195 LEQKYCLDEQIRQTILLFEYQWTKKNITLDINLDNITYIGSKELLAQVWQNILGNAIKFS 254 Query: 241 PEGGEISVSLRPDGPWISAVIADTGIGMTPKVRKHIFEKFYQGDPARSAEGNGLGLPLVA 300 + G I V+L + I D GIGM+ +V+ +FEKFYQGD + ++GNGLGL LV Sbjct: 255 HQNGTIQVTLTQTNEEVLITIKDNGIGMSEEVKDRVFEKFYQGDSSHYSDGNGLGLALVK 314 Query: 301 RIISLSGGRIEVSSEPGVGSAFTIKLP 327 RII + G IE+SS GVG+ F +KLP Sbjct: 315 RIIDICEGTIEISSHEGVGTDFIVKLP 341 >B1QNQ2.1 B1QNQ2_CLOBO Sensor protein EC=2.7.13.3 Length = 342 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/327 (44%), Positives = 199/327 (60%), Gaps = 2/327 (0%) Query: 1 VFVIVVSFLLVMAILAYLYIRLGNDAMQHRNPFPPVLTIILFSLXXXXXXXXXXXRKILA 60 VF IV S +++ ++ R + NP + + + S+ +K+L+ Sbjct: 17 VFFIVTSAVVISGLVVVFLSRF--NVFTQPNPLILLGWLGIISIMVSTAIAQIIGKKVLS 74 Query: 61 PIADLIKAAKEVSRGNFDIHLDESHRVGEISDVAHHFNIMVQELRSIETLRNDFVVNVSH 120 PI+DL KA KEV++GNF+ L ES EI ++AH FNIM EL +IETLR+DF+ NVSH Sbjct: 75 PISDLNKATKEVAKGNFNTRLSESSWTDEIREMAHSFNIMTHELGNIETLRDDFISNVSH 134 Query: 121 EFKTPLAAIEGYATLLQDDSLSKEEHDEYTGMIIDSARQLSALSGNILKISKXXXXXXXX 180 EFKTP++AIEGYATLLQDD LS EE EY I+ S ++LS+LSGNIL+I++ Sbjct: 135 EFKTPISAIEGYATLLQDDELSDEERREYIHKILISTKRLSSLSGNILQITELENQKILP 194 Query: 181 XXXXYXXXXXXXXXXXXXXSAWEPKQLNLNIDLDELHYYGNEELMMQVWLNVLGNAIKFT 240 Y W K + L+I+LD + Y G++EL+ QVW N+LGNAIKF+ Sbjct: 195 LEQKYCLDEQIRQTILLFEYQWTKKNITLDINLDNITYIGSKELLAQVWQNILGNAIKFS 254 Query: 241 PEGGEISVSLRPDGPWISAVIADTGIGMTPKVRKHIFEKFYQGDPARSAEGNGLGLPLVA 300 + G I V+L + I D GIGM+ +V+ +FEKFYQGD + ++GNGLGL LV Sbjct: 255 HQNGTIQVTLTQTNEEVLITIKDNGIGMSEEVKDRVFEKFYQGDSSHYSDGNGLGLALVK 314 Query: 301 RIISLSGGRIEVSSEPGVGSAFTIKLP 327 RII + G IE+SS GVG+ F +KLP Sbjct: 315 RIIDICEGTIEISSHEGVGTDFIVKLP 341 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,762,273,851 Number of extensions: 67257007 Number of successful extensions: 273460 Number of sequences better than 1.0e-05: 23010 Number of HSP's gapped: 247572 Number of HSP's successfully gapped: 23363 Length of query: 333 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 197 Effective length of database: 1,779,438,163 Effective search space: 350549318111 Effective search space used: 350549318111 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)