BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0007.p (224 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0FEQ3.1 C0FEQ3_9CLOT Putative uncharacterized protein 325 2e-87 A6LWA1.1 A6LWA1_CLOB8 Two component transcriptional regulator, w... 320 7e-86 B1KXZ8.1 B1KXZ8_CLOBM DNA-binding response regulator 312 2e-83 A7FSF1.1 A7FSF1_CLOB1 DNA-binding response regulator 311 2e-83 A5I096.1 A5I096_CLOBH DNA-binding response regulator 311 2e-83 >C0FEQ3.1 C0FEQ3_9CLOT Putative uncharacterized protein Length = 225 Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 158/222 (71%), Positives = 185/222 (83%) Query: 1 MFNILVVEDDSKLRQLFCTVLTKNGYRAIPAVNGEDALTVLDKEYIDLIICDIMMPLMDG 60 MFNILVVEDD KLR LFCTVL NGY AIPA +G AL +LD EY+DLII DIMMP MDG Sbjct: 1 MFNILVVEDDMKLRNLFCTVLLNNGYCAIPAESGLAALKILDTEYVDLIISDIMMPGMDG 60 Query: 61 YELTRTLRDXXXXLPVLMVTARETFADKQQGFLVGIDDYMVKPINVNEMLLRVGALLRRA 120 YEL TLR LP+L++TA+E F DKQ+GFL G DDYMVKPI+VNEM+LR+GALL+RA Sbjct: 61 YELIETLRVSGYTLPILIITAKERFEDKQRGFLAGTDDYMVKPIDVNEMVLRIGALLKRA 120 Query: 121 KIISERRIEWGATILDYDALTVIQGQESILLPQKEFYLLYKLISYPNKIFTKQQLMDEIW 180 +I +ER+I G T+L+YDALTV E +LLPQKEFYLLYKL+SYPNKIFT+QQLMDEIW Sbjct: 121 RISTERKIICGKTVLNYDALTVTFNGEELLLPQKEFYLLYKLMSYPNKIFTRQQLMDEIW 180 Query: 181 GMDTESDEHTVVVHINRLRERFRESTDFEIVTVRGLGYKAVK 222 G+D++SDE TV VHINRLRERF++ DF+I+TVRGLGYK VK Sbjct: 181 GVDSQSDERTVDVHINRLRERFKDCDDFQILTVRGLGYKVVK 222 >A6LWA1.1 A6LWA1_CLOB8 Two component transcriptional regulator, winged helix family Length = 225 Score = 320 bits (819), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 151/222 (68%), Positives = 189/222 (85%) Query: 1 MFNILVVEDDSKLRQLFCTVLTKNGYRAIPAVNGEDALTVLDKEYIDLIICDIMMPLMDG 60 MF+IL+VEDD +LR+LF TVL KNGY+ A +G +AL VLDKEYIDLII DIMMP MDG Sbjct: 1 MFHILIVEDDKELRELFSTVLLKNGYKTTGAKDGIEALNVLDKEYIDLIISDIMMPNMDG 60 Query: 61 YELTRTLRDXXXXLPVLMVTARETFADKQQGFLVGIDDYMVKPINVNEMLLRVGALLRRA 120 +EL +++RD LP+LM+TA+E F DKQ+GFL+GIDDYMVKPI+VNEM+LRVGALLRRA Sbjct: 61 FELIKSIRDAQFNLPILMITAKERFQDKQRGFLLGIDDYMVKPIDVNEMVLRVGALLRRA 120 Query: 121 KIISERRIEWGATILDYDALTVIQGQESILLPQKEFYLLYKLISYPNKIFTKQQLMDEIW 180 +IISER+ G T+L+YD+L+V Q E+ +LPQKEFY+LYKLISYPN+IFT+Q+LMDE W Sbjct: 121 QIISERKQSVGDTMLEYDSLSVYQNGEATVLPQKEFYILYKLISYPNRIFTRQELMDEFW 180 Query: 181 GMDTESDEHTVVVHINRLRERFRESTDFEIVTVRGLGYKAVK 222 G+D+E+D TV VHINRLR+RF+ + DF+I+TVRGLGYK VK Sbjct: 181 GLDSETDIRTVDVHINRLRDRFKNNIDFDILTVRGLGYKVVK 222 >B1KXZ8.1 B1KXZ8_CLOBM DNA-binding response regulator Length = 223 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 147/222 (66%), Positives = 184/222 (82%) Query: 1 MFNILVVEDDSKLRQLFCTVLTKNGYRAIPAVNGEDALTVLDKEYIDLIICDIMMPLMDG 60 MF +LVVEDD LR+LFCTVL KNGY++I A +G+ AL VL KEYIDLII DIMMP MDG Sbjct: 1 MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDVLYKEYIDLIISDIMMPNMDG 60 Query: 61 YELTRTLRDXXXXLPVLMVTARETFADKQQGFLVGIDDYMVKPINVNEMLLRVGALLRRA 120 Y LT+ +R+ +P+LM+TA+ETF+DKQ+GF VG DDYMVKPI+VNEM+LRVGALLRR+ Sbjct: 61 YTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRS 120 Query: 121 KIISERRIEWGATILDYDALTVIQGQESILLPQKEFYLLYKLISYPNKIFTKQQLMDEIW 180 +II+ERRI G T YD L+V + ++LPQKEFYL+YKL+S PNKIFT+QQLMDEIW Sbjct: 121 QIINERRIVIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIW 180 Query: 181 GMDTESDEHTVVVHINRLRERFRESTDFEIVTVRGLGYKAVK 222 G+++E+D TV VHINRLR+RF+++ DF I+T+RGLGYK VK Sbjct: 181 GIESETDPRTVDVHINRLRDRFKDNKDFNIITIRGLGYKVVK 222 >A7FSF1.1 A7FSF1_CLOB1 DNA-binding response regulator Length = 223 Score = 311 bits (798), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 147/222 (66%), Positives = 183/222 (82%) Query: 1 MFNILVVEDDSKLRQLFCTVLTKNGYRAIPAVNGEDALTVLDKEYIDLIICDIMMPLMDG 60 MF +LVVEDD LR+LFCTVL KNGY++I A +G AL VL KEYIDLII DIMMP MDG Sbjct: 1 MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGHSALDVLYKEYIDLIISDIMMPNMDG 60 Query: 61 YELTRTLRDXXXXLPVLMVTARETFADKQQGFLVGIDDYMVKPINVNEMLLRVGALLRRA 120 Y LT+ +R+ +P+LM+TA+ETF+DKQ+GF VG DDYMVKPI+VNEM+LRVGALLRR+ Sbjct: 61 YTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRS 120 Query: 121 KIISERRIEWGATILDYDALTVIQGQESILLPQKEFYLLYKLISYPNKIFTKQQLMDEIW 180 +II+ERRI G T YD L+V + ++LPQKEFYL+YKL+S PNKIFT+QQLMDEIW Sbjct: 121 QIINERRIVIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIW 180 Query: 181 GMDTESDEHTVVVHINRLRERFRESTDFEIVTVRGLGYKAVK 222 G+++E+D TV VHINRLR+RF+++ DF I+T+RGLGYK VK Sbjct: 181 GIESETDPRTVDVHINRLRDRFKDNKDFNIITIRGLGYKVVK 222 >A5I096.1 A5I096_CLOBH DNA-binding response regulator Length = 223 Score = 311 bits (798), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 147/222 (66%), Positives = 183/222 (82%) Query: 1 MFNILVVEDDSKLRQLFCTVLTKNGYRAIPAVNGEDALTVLDKEYIDLIICDIMMPLMDG 60 MF +LVVEDD LR+LFCTVL KNGY++I A +G AL VL KEYIDLII DIMMP MDG Sbjct: 1 MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGHSALDVLYKEYIDLIISDIMMPNMDG 60 Query: 61 YELTRTLRDXXXXLPVLMVTARETFADKQQGFLVGIDDYMVKPINVNEMLLRVGALLRRA 120 Y LT+ +R+ +P+LM+TA+ETF+DKQ+GF VG DDYMVKPI+VNEM+LRVGALLRR+ Sbjct: 61 YTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRS 120 Query: 121 KIISERRIEWGATILDYDALTVIQGQESILLPQKEFYLLYKLISYPNKIFTKQQLMDEIW 180 +II+ERRI G T YD L+V + ++LPQKEFYL+YKL+S PNKIFT+QQLMDEIW Sbjct: 121 QIINERRIVIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIW 180 Query: 181 GMDTESDEHTVVVHINRLRERFRESTDFEIVTVRGLGYKAVK 222 G+++E+D TV VHINRLR+RF+++ DF I+T+RGLGYK VK Sbjct: 181 GIESETDPRTVDVHINRLRDRFKDNKDFNIITIRGLGYKVVK 222 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.142 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,207,835,988 Number of extensions: 46014344 Number of successful extensions: 188047 Number of sequences better than 1.0e-05: 28840 Number of HSP's gapped: 161840 Number of HSP's successfully gapped: 28985 Length of query: 224 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 93 Effective length of database: 1,826,543,238 Effective search space: 169868521134 Effective search space used: 169868521134 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)