BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0004.p
         (117 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJ53.1 B3KJ53_9BACI Regulatory protein ArsR                         130   3e-29
Q5L2F8.1 Q5L2F8_GEOKA Transcriptional regulator                       117   4e-25
A4INR0.1 A4INR0_GEOTN Transcriptional regulator ArsR                  113   5e-24
Q9RA93.1 Q9RA93_9BACI ArsR                                            112   1e-23
Q5Q1Q9.1 Q5Q1Q9_9BACI Arsenical resistance operon repressor           110   3e-23

>B3KJ53.1 B3KJ53_9BACI Regulatory protein ArsR
          Length = 86

 Score =  130 bits (328), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 70/75 (93%)

Query: 10 MSRIADDLKLLGDRTRLLMLSLLKEREWCVCEFVEIFDISQPAISQHLRKLRSKGIVKEQ 69
          M+ IA+ LKLLGD+TRL ML+LLKEREWCVCEFV+IFD+SQPAISQHLRKL+S+GIV E 
Sbjct: 4  MNEIAEKLKLLGDKTRLTMLTLLKEREWCVCEFVDIFDMSQPAISQHLRKLKSQGIVNEA 63

Query: 70 KRGQWIHYSLNVEDK 84
          +RGQW++YSLNV+DK
Sbjct: 64 RRGQWVYYSLNVDDK 78


>Q5L2F8.1 Q5L2F8_GEOKA Transcriptional regulator
          Length = 115

 Score =  117 bits (292), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 86/115 (74%), Gaps = 4/115 (3%)

Query: 1   MEETTVIADMSRIADDLKLLGDRTRLLMLSLLKEREWCVCEFVEIFDISQPAISQHLRKL 60
           M++T V  ++ + +  LKLLGD+TRL ++++LK+RE CVCE +E+FD+SQPAISQHLRKL
Sbjct: 1   MQKTVV--EIEKASHVLKLLGDKTRLTIMAILKQRECCVCELLEVFDMSQPAISQHLRKL 58

Query: 61  RSKGIVKEQKRGQWIHYSLNVEDKPH--IQAVLQLTPDSSTILAVLNKTQVTVCC 113
           +  G+VKE KRGQWI+YSLN +++ +  IQ +LQ  PD +  +  + +T  T+ C
Sbjct: 59  KDAGLVKEDKRGQWIYYSLNSQNELYDFIQDILQHIPDQTENIRKIEETNPTLRC 113


>A4INR0.1 A4INR0_GEOTN Transcriptional regulator ArsR
          Length = 115

 Score =  113 bits (283), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 85/115 (73%), Gaps = 4/115 (3%)

Query: 1   MEETTVIADMSRIADDLKLLGDRTRLLMLSLLKEREWCVCEFVEIFDISQPAISQHLRKL 60
           M++T V  ++ + +  LKLLGD+TRL ++++LK+RE CVCE +E+FD+SQP+ISQHLRKL
Sbjct: 1   MQKTVV--EIEKASHALKLLGDKTRLTIMAILKQRECCVCELLEVFDMSQPSISQHLRKL 58

Query: 61  RSKGIVKEQKRGQWIHYSLNVEDKPH--IQAVLQLTPDSSTILAVLNKTQVTVCC 113
           +  G+VKE +RGQWI+YSLN +++ +  IQ +LQ  PD +  +  + +   T+ C
Sbjct: 59  KDAGLVKEDRRGQWIYYSLNPQNELYDFIQDILQHIPDQTENIRKIEENNPTLRC 113


>Q9RA93.1 Q9RA93_9BACI ArsR
          Length = 115

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 85/115 (73%), Gaps = 4/115 (3%)

Query: 1   MEETTVIADMSRIADDLKLLGDRTRLLMLSLLKEREWCVCEFVEIFDISQPAISQHLRKL 60
           ME+T +  +++R++  LKLLGD+TRL ++S+LK+RE CVCE +E+FD+SQP+ISQHLRKL
Sbjct: 1   MEKTVI--ELTRVSQLLKLLGDKTRLTIVSILKQRECCVCELLEVFDMSQPSISQHLRKL 58

Query: 61  RSKGIVKEQKRGQWIHYSLNVEDKPH--IQAVLQLTPDSSTILAVLNKTQVTVCC 113
           +  G+V+E++RGQWI+YSLN     +  ++ VL   PD +  +  + K+  T+ C
Sbjct: 59  KDLGLVQEERRGQWIYYSLNQASDLYTILEDVLAHVPDQTEKIKQIEKSNPTLRC 113


>Q5Q1Q9.1 Q5Q1Q9_9BACI Arsenical resistance operon repressor
          Length = 115

 Score =  110 bits (276), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 84/115 (73%), Gaps = 4/115 (3%)

Query: 1   MEETTVIADMSRIADDLKLLGDRTRLLMLSLLKEREWCVCEFVEIFDISQPAISQHLRKL 60
           ME+T V  +++R +  LKLLGD+TRL ++S+LK+RE CVCE +E+FD+SQP+ISQHLRKL
Sbjct: 1   MEKTVV--EVTRASQLLKLLGDKTRLTIVSILKQRECCVCELLEVFDMSQPSISQHLRKL 58

Query: 61  RSKGIVKEQKRGQWIHYSLNVEDKPH--IQAVLQLTPDSSTILAVLNKTQVTVCC 113
           +  G+V+E++RGQWI+YSLN     +  ++ +L   PD +  +  + K+  T+ C
Sbjct: 59  KDLGLVQEERRGQWIYYSLNQASDLYTLLEDILAHVPDQTEKIKQIEKSNPTLRC 113


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 608,525,756
Number of extensions: 20020287
Number of successful extensions: 61013
Number of sequences better than 1.0e-05: 1218
Number of HSP's gapped: 61318
Number of HSP's successfully gapped: 1218
Length of query: 117
Length of database: 3,060,696,203
Length adjustment: 84
Effective length of query: 33
Effective length of database: 2,269,330,943
Effective search space: 74887921119
Effective search space used: 74887921119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)