BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0190.0001.p
         (205 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KDY1.1 B3KDY1_9BACI Putative uncharacterized protein                 93   1e-17

>B3KDY1.1 B3KDY1_9BACI Putative uncharacterized protein
          Length = 541

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 14/177 (7%)

Query: 1   VQLLGRRWLKESRSIEPFERLPLAFYHSSERQDGPLDYETLMELVKRKAGDNKETVYRFL 60
            Q + R+WL+       FE + LAF   ++     +DY +L++ + R  G + + VY+++
Sbjct: 182 TQHIMRKWLQHHVEPSNFESITLAF--CTDINSSAVDYRSLLDYLHRY-GKSPDVVYQYI 238

Query: 61  AWSQGNPLFSISNKKLWPGYRRAILKYFQSSDREAFKSRDFRKSYAAAAGPALQNVYNEA 120
            WS   P+F +  + L P Y  AI+ YF+  DREAFK++D+ K+Y ++  P L+ VY + 
Sbjct: 239 QWSAEQPVF-VRPRGLVPAYAAAIIDYFKIHDREAFKNKDYVKTYFSSPAPILKPVYAQV 297

Query: 121 RSQLASPLARWVSR-SRF---------QILISGCXXXXXXXXXXXXXXXXRPDPADT 167
           +++LASPL +W  R SRF          I+++G                  P+PA T
Sbjct: 298 KAELASPLVQWFRRHSRFVKITSSLLVVIVVAGAAFMMIQNGKGPADGDANPNPAVT 354


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 984,895,783
Number of extensions: 33365626
Number of successful extensions: 65456
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 65456
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 3,060,696,203
Length adjustment: 129
Effective length of query: 76
Effective length of database: 1,845,385,268
Effective search space: 140249280368
Effective search space used: 140249280368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)