BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0103.p (153 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKK6.1 B3KKK6_9BACI Firmicute transcriptional repressor of cla... 270 4e-71 B1DK12.1 B1DK12_9BACL Transcriptional repressor, CtsR 232 7e-60 B7GJ36.1 B7GJ36_ANOFW Transcriptional repressor of class III str... 173 3e-42 Q9JWR8.1 Q9JWR8_BACHD CtsR 172 8e-42 A8W1K1.1 A8W1K1_9BACI Ribosomal protein L14 170 4e-41 >B3KKK6.1 B3KKK6_9BACI Firmicute transcriptional repressor of class III stress genes Length = 153 Score = 270 bits (689), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 130/153 (84%), Positives = 140/153 (91%) Query: 1 MRNISDIIEQYLKNILHESPEGTVEIQRNDLADQFSCVPSQINYVISTRFTLEKGYVVES 60 MRNISDIIEQYLK+IL ESPEGTVEIQRNDLA+QFSCVPSQINYVISTRFTLEKG++VES Sbjct: 1 MRNISDIIEQYLKSILQESPEGTVEIQRNDLAEQFSCVPSQINYVISTRFTLEKGFLVES 60 Query: 61 KRGGGGYIRIQRFELPQNVALYAHLNSTIGKDIDQNSAEGLIYQLEEARFLTKREACLMR 120 KRGGGGYIRIQR ELPQ+ AL HL+ TIG IDQ AEGLIYQLEE+RFLTKREA LMR Sbjct: 61 KRGGGGYIRIQRIELPQHTALQQHLHHTIGSMIDQTVAEGLIYQLEESRFLTKREASLMR 120 Query: 121 AAVSRECLTVNLPYRDEIRAKLMKAMLISLLGK 153 AAVSRECL V LPYRDE+RA++MKAMLISLLGK Sbjct: 121 AAVSRECLNVKLPYRDELRARIMKAMLISLLGK 153 >B1DK12.1 B1DK12_9BACL Transcriptional repressor, CtsR Length = 153 Score = 232 bits (592), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 111/153 (72%), Positives = 131/153 (85%) Query: 1 MRNISDIIEQYLKNILHESPEGTVEIQRNDLADQFSCVPSQINYVISTRFTLEKGYVVES 60 MRNISD+IEQYLK +L ESPEG VEIQRN+LAD+FSCVPSQINYVISTRFTLEKGY+VES Sbjct: 1 MRNISDLIEQYLKQMLQESPEGAVEIQRNELADKFSCVPSQINYVISTRFTLEKGYMVES 60 Query: 61 KRGGGGYIRIQRFELPQNVALYAHLNSTIGKDIDQNSAEGLIYQLEEARFLTKREACLMR 120 KRGGGGYIRIQR +LP + H++ TIG ++Q+ AEGLIYQLEEAR +TKREA L+R Sbjct: 61 KRGGGGYIRIQRVDLPALKTIQFHIHQTIGDCVEQSVAEGLIYQLEEARLITKREANLLR 120 Query: 121 AAVSRECLTVNLPYRDEIRAKLMKAMLISLLGK 153 AAV R+ + V LP RDEIRA+L+++MLISLL K Sbjct: 121 AAVDRDTIAVKLPLRDEIRARLLRSMLISLLAK 153 >B7GJ36.1 B7GJ36_ANOFW Transcriptional repressor of class III stress genes, CtsR Length = 153 Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 81/150 (54%), Positives = 115/150 (76%) Query: 1 MRNISDIIEQYLKNILHESPEGTVEIQRNDLADQFSCVPSQINYVISTRFTLEKGYVVES 60 MRNISD+IEQYLK +L+ S + VEI+R+++AD+F CVPSQINYVI+TRFTLE+GY+VES Sbjct: 1 MRNISDVIEQYLKQVLNMSGKDIVEIKRSEIADKFQCVPSQINYVINTRFTLERGYIVES 60 Query: 61 KRGGGGYIRIQRFELPQNVALYAHLNSTIGKDIDQNSAEGLIYQLEEARFLTKREACLMR 120 KRGGGGYIRI + + L HL S + + I Q + E +I +L + + ++KREA +M Sbjct: 61 KRGGGGYIRIMKVKTQNTSQLIEHLLSLVQERISQTNGEHIIQRLLDEKVISKREANMML 120 Query: 121 AAVSRECLTVNLPYRDEIRAKLMKAMLISL 150 + + R L+++LP+RDE+RA+++KAML SL Sbjct: 121 SIIDRTVLSLDLPHRDELRARILKAMLTSL 150 >Q9JWR8.1 Q9JWR8_BACHD CtsR Length = 156 Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 86/150 (57%), Positives = 113/150 (75%) Query: 1 MRNISDIIEQYLKNILHESPEGTVEIQRNDLADQFSCVPSQINYVISTRFTLEKGYVVES 60 MRNISDIIEQYLKNI+ +S + +EI+R++LA+QF CVPSQINYVISTRFT+EKGY+VES Sbjct: 1 MRNISDIIEQYLKNIILQSEKELIEIKRSELAEQFQCVPSQINYVISTRFTIEKGYLVES 60 Query: 61 KRGGGGYIRIQRFELPQNVALYAHLNSTIGKDIDQNSAEGLIYQLEEARFLTKREACLMR 120 KRGGGGYIRI + + +N++L+ L IGK I Q AEG+I +L E ++KRE LM Sbjct: 61 KRGGGGYIRIMKAKPHENLSLFDQLAQLIGKGISQQGAEGIISRLFEEGVISKRETRLML 120 Query: 121 AAVSRECLTVNLPYRDEIRAKLMKAMLISL 150 + + R + +RDEIRA L+KAM+ +L Sbjct: 121 SVMDRAHYHTTVNHRDEIRANLLKAMIETL 150 >A8W1K1.1 A8W1K1_9BACI Ribosomal protein L14 Length = 158 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 83/150 (55%), Positives = 112/150 (74%) Query: 1 MRNISDIIEQYLKNILHESPEGTVEIQRNDLADQFSCVPSQINYVISTRFTLEKGYVVES 60 MRNISD+IE YLK I+ ++ + +E++R++LA+QF CVPSQINYVI TRFT+EKGY+V+S Sbjct: 1 MRNISDVIEGYLKQIIEKNDQELIEVKRSELAEQFDCVPSQINYVIRTRFTVEKGYMVQS 60 Query: 61 KRGGGGYIRIQRFELPQNVALYAHLNSTIGKDIDQNSAEGLIYQLEEARFLTKREACLMR 120 KRGGGGYIRI R ++ LY L G +I Q +A LI +L E +TKREA LM Sbjct: 61 KRGGGGYIRITRVTPDNHLQLYDQLIDLSGDEISQTAAMHLIGRLLEEEAITKREANLME 120 Query: 121 AAVSRECLTVNLPYRDEIRAKLMKAMLISL 150 + ++RE L++ LPYRD +RA+L+KAML +L Sbjct: 121 SVMNREVLSIRLPYRDRLRAELLKAMLTTL 150 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 815,112,535 Number of extensions: 30394120 Number of successful extensions: 65504 Number of sequences better than 1.0e-05: 316 Number of HSP's gapped: 65372 Number of HSP's successfully gapped: 316 Length of query: 153 Length of database: 3,060,696,203 Length adjustment: 115 Effective length of query: 38 Effective length of database: 1,977,279,478 Effective search space: 75136620164 Effective search space used: 75136620164 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)