BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0102.p (174 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKK5.1 B3KKK5_9BACI UvrB/UvrC protein 254 3e-66 B1DK11.1 B1DK11_9BACL UvrB/UvrC protein 243 3e-63 Q9JWP8.1 Q9JWP8_BACHD YacH 211 3e-53 C0ZIE5.1 C0ZIE5_BREBN Modulator of CtsR repression protein 204 2e-51 B7GJ37.1 B7GJ37_ANOFW Modulator of heat shock repressor CtsR, McsA 197 3e-49 >B3KKK5.1 B3KKK5_9BACI UvrB/UvrC protein Length = 174 Score = 254 bits (648), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 129/173 (74%), Positives = 148/173 (85%) Query: 1 MLCQECGVKPATLHFTKIVNGEKTEFHICESCAREKGELIPGTAGGFSIHSLLSGLLDLE 60 MLCQECG +PATLHFTKIVNGEKTEFH CE+CAREKGELIPGT+ GFSIHSLLSGLLDL+ Sbjct: 1 MLCQECGKRPATLHFTKIVNGEKTEFHFCETCAREKGELIPGTSNGFSIHSLLSGLLDLD 60 Query: 61 GAGKEKNAAAQTVQGLRCENCGMTYSQFSKLGRFGCSSCYKYFDSTLDPLFRRVHGSTAH 120 +GK + A+T Q L+CE CGMTYSQFSKLGRFGCSSCYKYF LDPLF+RVHG T+H Sbjct: 61 PSGKGQTPGAKTAQTLQCEECGMTYSQFSKLGRFGCSSCYKYFSDRLDPLFKRVHGGTSH 120 Query: 121 VGKLPKRAGAQIMCKRKIDELKQELQQSIAEEEFETAAELRDQIRKLEKEMPQ 173 VGK+PKR G +I KR+IDELK+ELQ I +EEFE AAE+RDQIR+LE+ + Q Sbjct: 121 VGKVPKRTGGRIQIKRRIDELKKELQMRILQEEFEAAAEIRDQIRELERNIAQ 173 >B1DK11.1 B1DK11_9BACL UvrB/UvrC protein Length = 174 Score = 243 bits (621), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 110/171 (64%), Positives = 142/171 (83%) Query: 1 MLCQECGVKPATLHFTKIVNGEKTEFHICESCAREKGELIPGTAGGFSIHSLLSGLLDLE 60 M+CQECG KPATLHFTKIVNGEKTEFHICESCARE+GE IPG GFSIHSLLSGLLD + Sbjct: 1 MICQECGKKPATLHFTKIVNGEKTEFHICESCARERGEGIPGAPNGFSIHSLLSGLLDFD 60 Query: 61 GAGKEKNAAAQTVQGLRCENCGMTYSQFSKLGRFGCSSCYKYFDSTLDPLFRRVHGSTAH 120 + +A+ Q +RC++CG+TY+QFSK+GRFGCS+CY+ F LDPL +RVHG+T H Sbjct: 61 PSSTNGANSAKQQQMIRCDHCGLTYAQFSKIGRFGCSNCYRQFTEKLDPLLKRVHGNTVH 120 Query: 121 VGKLPKRAGAQIMCKRKIDELKQELQQSIAEEEFETAAELRDQIRKLEKEM 171 VGK+PKR+G QI KR+I++L+++LQ I EEFE+AA++RD+IR+LE+++ Sbjct: 121 VGKIPKRSGGQIQYKREIEQLRRDLQSRIEREEFESAAQIRDRIRELERKI 171 >Q9JWP8.1 Q9JWP8_BACHD YacH Length = 177 Score = 211 bits (536), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 105/173 (60%), Positives = 128/173 (73%), Gaps = 3/173 (1%) Query: 1 MLCQECGVKPATLHFTKIVNGEKTEFHICESCAREKGELIPGTAGGFSIHSLLSGLLDLE 60 M CQEC +PATLHFTKI+NGEKTEFHICE CA+EKGE PG+ FSIH LLSGLLD E Sbjct: 1 MKCQECQQRPATLHFTKIINGEKTEFHICEQCAKEKGEHFPGS-NSFSIHQLLSGLLDFE 59 Query: 61 GAGKEKNAAAQTVQ-GLRCENCGMTYSQFSKLGRFGCSSCYKYFDSTLDPLFRRVH-GST 118 + A QT++ L CE CGMTY QF+++GRFGC+SCY+ F LDP+F+RVH GS Sbjct: 60 QPKPQDPQAQQTIKRSLTCEKCGMTYEQFARVGRFGCASCYQTFSPKLDPVFKRVHSGSV 119 Query: 119 AHVGKLPKRAGAQIMCKRKIDELKQELQQSIAEEEFETAAELRDQIRKLEKEM 171 AH GK+PKR G I +R+I LK+ L+Q I EEFE AA +RDQIR LE+++ Sbjct: 120 AHRGKVPKRIGGGIEIRRQIRALKETLKQHIEREEFEEAALVRDQIRSLERKV 172 >C0ZIE5.1 C0ZIE5_BREBN Modulator of CtsR repression protein Length = 172 Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 98/173 (56%), Positives = 128/173 (73%), Gaps = 2/173 (1%) Query: 1 MLCQECGVKPATLHFTKIVNGEKTEFHICESCAREKGELIPGTAGGFSIHSLLSGLLDLE 60 M C+ECG +PATLH TKIVNGEKTE+HICE CA EKG++ G FSI++LLSGLL + Sbjct: 1 MNCEECGKRPATLHLTKIVNGEKTEYHICEQCAHEKGDVFTGFHN-FSINNLLSGLLKFD 59 Query: 61 GAGKEKNAAAQTVQGLRCENCGMTYSQFSKLGRFGCSSCYKYFDSTLDPLFRRVHGSTAH 120 K A T + L+CE CG+TY+QFSK GRFGCS CY + LDPLFRR+HG+T H Sbjct: 60 PMQKNGRETA-TNKPLQCETCGLTYAQFSKSGRFGCSDCYTFLGDRLDPLFRRIHGNTQH 118 Query: 121 VGKLPKRAGAQIMCKRKIDELKQELQQSIAEEEFETAAELRDQIRKLEKEMPQ 173 GK+P+R G ++ ++++++LKQ LQ +A EEFE AAE+RD+IR LE++M Q Sbjct: 119 SGKVPERTGGKLKIRKELEQLKQALQSHVASEEFEKAAEMRDRIRALEQKMAQ 171 >B7GJ37.1 B7GJ37_ANOFW Modulator of heat shock repressor CtsR, McsA Length = 183 Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 97/177 (54%), Positives = 133/177 (75%), Gaps = 3/177 (1%) Query: 1 MLCQECGVKPATLHFTKIVNGEKTEFHICESCAREKGEL-IPGTAGGFSIHSLLSGLLDL 59 ++CQEC +PATLHFTKIVNGEKTEFH+CE CA EKGE+ + G FSI++L++GLL++ Sbjct: 4 LICQECNQRPATLHFTKIVNGEKTEFHLCEQCAHEKGEMFMFPHQGAFSINNLIAGLLNM 63 Query: 60 EGAGKEKNAAA-QTVQGLRCENCGMTYSQFSKLGRFGCSSCYKYFDSTLDPLFRRVH-GS 117 + + KE A + L+CE C MTY+QF K+GRFGC+SCY+ F S L P+FR++H G Sbjct: 64 DASLKEPKAPSFHNEHILQCERCKMTYAQFVKVGRFGCASCYETFRSHLPPIFRKLHGGH 123 Query: 118 TAHVGKLPKRAGAQIMCKRKIDELKQELQQSIAEEEFETAAELRDQIRKLEKEMPQE 174 AH GK+PKR G + +++I +LKQ LQ+ IA+E+FE AAE+RDQIR+LE ++ E Sbjct: 124 VAHEGKIPKRVGGTLYVRKQIGQLKQMLQELIAKEQFEKAAEVRDQIRELEAKLHAE 180 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,011,111,456 Number of extensions: 39709026 Number of successful extensions: 140676 Number of sequences better than 1.0e-05: 230 Number of HSP's gapped: 140281 Number of HSP's successfully gapped: 230 Length of query: 174 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 48 Effective length of database: 1,873,648,313 Effective search space: 89935119024 Effective search space used: 89935119024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)