BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0099.p (455 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKK1.1 B3KKK1_9BACI DNA repair protein radA 820 0.0 B1DK07.1 B1DK07_9BACL DNA repair protein radA 773 0.0 Q9KGG1.1 RADA_BACHD DNA repair protein radA homolog 650 0.0 C0ZIE8.1 C0ZIE8_BREBN Probable DNA repair protein RadA 643 0.0 Q5WLU0.1 Q5WLU0_BACSK DNA repair protein radA 634 e-180 >B3KKK1.1 B3KKK1_9BACI DNA repair protein radA Length = 455 Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/455 (86%), Positives = 423/455 (92%) Query: 1 MAKPKTKFFCTECGYESPKWFGKCPGCQAWNSMVEETESVVKTQGMTAPIFQSKEKAQSI 60 MAK KTKFFCTECGYE+PKWFGKCPGCQ+WNSMVEETE+V+KTQGM +P+F SKEK SI Sbjct: 1 MAKTKTKFFCTECGYEAPKWFGKCPGCQSWNSMVEETETVIKTQGMNSPLFHSKEKPLSI 60 Query: 61 INIESDKEPRILTGIGELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGLRV 120 INIES KEPRI TGI ELNRVLGGG+VPGSLVLVGGDPGIGKSTLLLQ S+ L G+RV Sbjct: 61 INIESGKEPRIQTGIAELNRVLGGGLVPGSLVLVGGDPGIGKSTLLLQASNRLAQNGIRV 120 Query: 121 LYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEAIEQIQPQFLVIDSIQTVFMP 180 LYISGEESVRQTKLRADRLGALS EL+VLCETN+ESIEEAIE +QP F+VIDSIQTV++P Sbjct: 121 LYISGEESVRQTKLRADRLGALSPELFVLCETNLESIEEAIENVQPGFVVIDSIQTVYLP 180 Query: 181 EVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG 240 EVTSAPGSV+QVRECT RFMR+AK++GIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG Sbjct: 181 EVTSAPGSVSQVRECTARFMRLAKVKGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG 240 Query: 241 ERHHTYRLLRAVKNRFGSTNEIGIFEMGEIGLAEVENPSELFLSERPLGVAGSAVVASME 300 ERHHTYRLLRAVKNRFGSTNEIGIFEMGE GL EV NPSELFLSERPLGVAGS VVASME Sbjct: 241 ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASME 300 Query: 301 GTRPVLVELQALVAATHFPSPRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVAGG 360 GTRPVLVELQAL++ THFPSPRRM TG+DH RM LIIAVLEKRMGM+LQ QDAYLNVAGG Sbjct: 301 GTRPVLVELQALISTTHFPSPRRMGTGVDHHRMNLIIAVLEKRMGMYLQTQDAYLNVAGG 360 Query: 361 VKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGEVRGVSRAETRVKEAAKLGFR 420 VKLDEPA+DLA+AVSIASSFRDI TKPYDV FGEVGLTGEVR VSRAE RV+EA KLGF+ Sbjct: 361 VKLDEPAVDLAIAVSIASSFRDIPTKPYDVIFGEVGLTGEVRAVSRAEQRVREAEKLGFK 420 Query: 421 RVIMPEKSMKGWKHPQDIQIIGVSTVADALAVALD 455 RV+MPEKS+KGWKHP+ IQIIGV+TVADALAVALD Sbjct: 421 RVLMPEKSLKGWKHPKGIQIIGVNTVADALAVALD 455 >B1DK07.1 B1DK07_9BACL DNA repair protein radA Length = 455 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/454 (82%), Positives = 409/454 (90%) Query: 1 MAKPKTKFFCTECGYESPKWFGKCPGCQAWNSMVEETESVVKTQGMTAPIFQSKEKAQSI 60 MAK K KF CTECG ESPKW GKCPGCQ+WN+MVEE E+VVKTQG+ + Q+KEK QSI Sbjct: 1 MAKIKLKFVCTECGTESPKWLGKCPGCQSWNTMVEEKETVVKTQGVGLRVAQTKEKPQSI 60 Query: 61 INIESDKEPRILTGIGELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGLRV 120 I+IES +EPRI T + ELNRVLGGG+VPGSL+LVGGDPGIGKSTLLLQTSHAL ++GL+V Sbjct: 61 IHIESGQEPRIETRLQELNRVLGGGVVPGSLILVGGDPGIGKSTLLLQTSHALASKGLKV 120 Query: 121 LYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEAIEQIQPQFLVIDSIQTVFMP 180 LYISGEESVRQT+LRADRLGAL+ L+VLCETNME I +AIE +QP FLVIDSIQTV+ P Sbjct: 121 LYISGEESVRQTRLRADRLGALTESLFVLCETNMEQINDAIESVQPDFLVIDSIQTVYDP 180 Query: 181 EVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG 240 V SAPGSV QVRECT FMR+AKI+GIATVLVGHVTKEGAIAGPR+LEHMVDCVLYFEG Sbjct: 181 NVQSAPGSVAQVRECTAHFMRVAKIKGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEG 240 Query: 241 ERHHTYRLLRAVKNRFGSTNEIGIFEMGEIGLAEVENPSELFLSERPLGVAGSAVVASME 300 ERHHTYRLLRAVKNRFGSTNEIGIFEMGE GL EV NPSELFLSERPLGV+GS VVASME Sbjct: 241 ERHHTYRLLRAVKNRFGSTNEIGIFEMGEEGLREVANPSELFLSERPLGVSGSTVVASME 300 Query: 301 GTRPVLVELQALVAATHFPSPRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVAGG 360 GTRPVLVELQALVAAT+FPSPRRM TG+DH RMALIIAVLEKR+GMFLQ QDAYLNVAGG Sbjct: 301 GTRPVLVELQALVAATNFPSPRRMSTGIDHHRMALIIAVLEKRIGMFLQTQDAYLNVAGG 360 Query: 361 VKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGEVRGVSRAETRVKEAAKLGFR 420 VKLDEPA+DLA AVS+ASSFRD T+PYDV FGEVGLTGEVR VSRAE RVKEA KLGF+ Sbjct: 361 VKLDEPAVDLAAAVSLASSFRDAPTRPYDVIFGEVGLTGEVRAVSRAEQRVKEAEKLGFK 420 Query: 421 RVIMPEKSMKGWKHPQDIQIIGVSTVADALAVAL 454 RVIMPEKS+KGWK P+ I+IIGVSTVA+AL+ AL Sbjct: 421 RVIMPEKSLKGWKPPEGIEIIGVSTVAEALSAAL 454 >Q9KGG1.1 RADA_BACHD DNA repair protein radA homolog Length = 457 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/455 (69%), Positives = 367/455 (80%), Gaps = 1/455 (0%) Query: 1 MAKPKTKFFCTECGYESPKWFGKCPGCQAWNSMVEE-TESVVKTQGMTAPIFQSKEKAQS 59 MAK KTKF C ECGYES KW GKCPGCQ+WNSMVEE TE K+ K Q Sbjct: 1 MAKKKTKFMCQECGYESAKWMGKCPGCQSWNSMVEEFTEVKAKSSRSYVTSGAGIAKPQP 60 Query: 60 IINIESDKEPRILTGIGELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGLR 119 I +E ++EPRI T + ELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQ S L R Sbjct: 61 ITKVEREQEPRIDTSMKELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQLSARLADLKQR 120 Query: 120 VLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEAIEQIQPQFLVIDSIQTVFM 179 VLYISGEESV+QTK+R+DRLG LS LYVL ET+ME IE+AI ++ P ++IDSIQTV+ Sbjct: 121 VLYISGEESVKQTKIRSDRLGVLSDHLYVLAETDMEKIEQAIGEVDPTLVIIDSIQTVYQ 180 Query: 180 PEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFE 239 E+TSAPGSV QVRECT FMRIAK G+A +VGHVTK+GAIAGP++LEHMVD VLYFE Sbjct: 181 DEITSAPGSVAQVRECTASFMRIAKTTGVAIFIVGHVTKQGAIAGPKLLEHMVDSVLYFE 240 Query: 240 GERHHTYRLLRAVKNRFGSTNEIGIFEMGEIGLAEVENPSELFLSERPLGVAGSAVVASM 299 GERHHTYR+LRAVKNRFGSTNE+GIFEM E GL EV NPSE+FL +R GVAGS VVASM Sbjct: 241 GERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVANPSEIFLEDRSSGVAGSTVVASM 300 Query: 300 EGTRPVLVELQALVAATHFPSPRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVAG 359 EGTRPVLVELQAL++ T F +PRRM TG+DH R++L++AVLEKR+GM LQNQDAY+NVAG Sbjct: 301 EGTRPVLVELQALISPTSFGNPRRMATGVDHNRISLLMAVLEKRVGMLLQNQDAYVNVAG 360 Query: 360 GVKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGEVRGVSRAETRVKEAAKLGF 419 GV+LDEPAIDL +AVSIASSFR+ T P++V GE+GLTGEVR VSR + RV EAAKLGF Sbjct: 361 GVRLDEPAIDLGIAVSIASSFRNQHTNPHEVVIGEIGLTGEVRRVSRIDQRVNEAAKLGF 420 Query: 420 RRVIMPEKSMKGWKHPQDIQIIGVSTVADALAVAL 454 +RVI+P+K++ GW P I++IGVSTV DAL V L Sbjct: 421 KRVIIPDKNLGGWTIPSTIEVIGVSTVQDALEVTL 455 >C0ZIE8.1 C0ZIE8_BREBN Probable DNA repair protein RadA Length = 455 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/452 (68%), Positives = 372/452 (82%), Gaps = 5/452 (1%) Query: 1 MAKPKTKFFCTECGYESPKWFGKCPGCQAWNSMVEET--ESVVKTQGMTAPIFQSKEKAQ 58 M+K KTK+ C ECGYESPKW GKCPGC +WN++VEE ++ + +GM+ QS A Sbjct: 1 MSKYKTKYACQECGYESPKWMGKCPGCSSWNTLVEEVTVKTAHRHEGMSGGQRQS---AI 57 Query: 59 SIINIESDKEPRILTGIGELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGL 118 + + S+++PR+ T IGELNRVLGGG+VPGSL+LVGGDPGIGKSTLLLQTS AL QG Sbjct: 58 PLTQVASEEDPRMDTTIGELNRVLGGGLVPGSLILVGGDPGIGKSTLLLQTSFALAHQGA 117 Query: 119 RVLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEAIEQIQPQFLVIDSIQTVF 178 +VLY+SGEES +Q K+RADRL + ++VL E +++ IE+ I Q+ P L+IDSIQTVF Sbjct: 118 KVLYVSGEESAKQIKIRADRLHLQTPPMFVLAENDLDLIEQHINQVDPDVLIIDSIQTVF 177 Query: 179 MPEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYF 238 P + SA GSV QVRE T + MRIAK +GI T +VGHVTKEG+IAGPRMLEHMVD VLYF Sbjct: 178 HPTIQSAAGSVAQVREATAQLMRIAKGKGIGTFIVGHVTKEGSIAGPRMLEHMVDAVLYF 237 Query: 239 EGERHHTYRLLRAVKNRFGSTNEIGIFEMGEIGLAEVENPSELFLSERPLGVAGSAVVAS 298 EGERH+T+R+LRAVKNRFGSTNEIGIFEM + GL EV NPSE+FL+ERP GVAGS VVAS Sbjct: 238 EGERHNTFRILRAVKNRFGSTNEIGIFEMKDRGLEEVANPSEIFLAERPFGVAGSTVVAS 297 Query: 299 MEGTRPVLVELQALVAATHFPSPRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVA 358 MEGTRPVLVELQALVA T F +PRR TG+DHQR+A+I+AVLEKRMGM LQNQDAY+NVA Sbjct: 298 MEGTRPVLVELQALVAPTSFVTPRRTATGVDHQRVAMIMAVLEKRMGMMLQNQDAYVNVA 357 Query: 359 GGVKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGEVRGVSRAETRVKEAAKLG 418 GGV+LDEPA+DLA+AVSIASSFRD +T P+DV GE+GLTGEVRGVSR E RV+EA KLG Sbjct: 358 GGVRLDEPAVDLAIAVSIASSFRDHATNPHDVVIGEIGLTGEVRGVSRIEQRVREAHKLG 417 Query: 419 FRRVIMPEKSMKGWKHPQDIQIIGVSTVADAL 450 F+RVI+PEK+++G P DIQ+IGVS +ADAL Sbjct: 418 FKRVIIPEKNIRGLDAPADIQVIGVSNIADAL 449 >Q5WLU0.1 Q5WLU0_BACSK DNA repair protein radA Length = 482 Score = 634 bits (1636), Expect = e-180, Method: Compositional matrix adjust. Identities = 307/456 (67%), Positives = 369/456 (80%), Gaps = 3/456 (0%) Query: 1 MAKPKTKFFCTECGYESPKWFGKCPGCQAWNSMVEETESVVKTQGMTAPIFQS--KEKAQ 58 MAK KTKF C ECGYES KW GKCPGCQ+WN+MVEE ++++ Q + + S ++K Q Sbjct: 26 MAKQKTKFVCQECGYESAKWMGKCPGCQSWNTMVEEI-NILEKQKNRSYVTSSGTRQKPQ 84 Query: 59 SIINIESDKEPRILTGIGELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGL 118 I ++ +KEPR+ T + EL+RVLGGGIVPGSLVLVGGDPGIGKSTLLLQ S L Sbjct: 85 PITAVQGEKEPRVSTTMAELDRVLGGGIVPGSLVLVGGDPGIGKSTLLLQLSAKLANVNE 144 Query: 119 RVLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEAIEQIQPQFLVIDSIQTVF 178 RVLYISGEESV+QTKLRADRL S +LYVL ET++ IE AI+++QP ++IDSIQTV+ Sbjct: 145 RVLYISGEESVKQTKLRADRLELASDQLYVLAETDIALIEGAIDEVQPSLVIIDSIQTVY 204 Query: 179 MPEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYF 238 E+TSAPGSV QVRECT FMR+AK +G+A +VGHVTK+G+IAGP++LEHMVD VLYF Sbjct: 205 QDEITSAPGSVAQVRECTAAFMRVAKTKGVAIFIVGHVTKQGSIAGPKLLEHMVDSVLYF 264 Query: 239 EGERHHTYRLLRAVKNRFGSTNEIGIFEMGEIGLAEVENPSELFLSERPLGVAGSAVVAS 298 EGERHH+YR+LRAVKNRFGSTNE+GIFEM ++GL EV+NPSE+FL ER G AGS VVAS Sbjct: 265 EGERHHSYRILRAVKNRFGSTNEMGIFEMKQLGLEEVKNPSEIFLEERSQGAAGSVVVAS 324 Query: 299 MEGTRPVLVELQALVAATHFPSPRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVA 358 MEGTRPVLVELQAL++ F +PRRM TG+DH R++L++AVLEKR GM LQNQDAYL VA Sbjct: 325 MEGTRPVLVELQALISPMGFGNPRRMATGLDHNRVSLLMAVLEKRAGMLLQNQDAYLKVA 384 Query: 359 GGVKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGEVRGVSRAETRVKEAAKLG 418 GGVKLDEPAIDLA+A+SIASSFRD T+P DV GEVGLTGE+R VSR + RV EAAKLG Sbjct: 385 GGVKLDEPAIDLAIALSIASSFRDQPTEPMDVAIGEVGLTGEIRRVSRIDQRVNEAAKLG 444 Query: 419 FRRVIMPEKSMKGWKHPQDIQIIGVSTVADALAVAL 454 F+RVI+PEK+ GW P I++IGV T+ A+ V L Sbjct: 445 FKRVIIPEKNKGGWTAPAGIEVIGVQTLEQAIEVVL 480 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,483,480,038 Number of extensions: 98384330 Number of successful extensions: 395806 Number of sequences better than 1.0e-05: 1488 Number of HSP's gapped: 393185 Number of HSP's successfully gapped: 1504 Length of query: 455 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 316 Effective length of database: 1,751,175,118 Effective search space: 553371337288 Effective search space used: 553371337288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)